BLASTX 7.6.2
Query= UN56313 /QuerySize=551
(550 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G42320.1 | Symbols: | nucleolar protein gar2-... 148 4e-036
TAIR9_protein||AT2G42320.2 | Symbols: | nucleolar protein gar2-... 148 4e-036
TAIR9_protein||AT3G57780.1 | Symbols: | EXPRESSED IN: 20 plant ... 85 3e-017
TAIR9_protein||AT5G06930.1 | Symbols: | LOCATED IN: chloroplast... 62 2e-010
TAIR9_protein||AT3G01810.1 | Symbols: | FUNCTIONS IN: molecular... 60 1e-009
TAIR9_protein||AT5G43230.1 | Symbols: | unknown protein | chr5:... 47 9e-006
>TAIR9_protein||AT2G42320.1 | Symbols: | nucleolar protein gar2-related |
chr2:17628102-17630657 FORWARD
Length = 670
Score = 148 bits (371), Expect = 4e-036
Identities = 76/96 (79%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Frame = +1
Query: 181 QSNGSEEEEEASFFPYAASSVTYKPPSTMDVAEKVAEAAGKLSRNVSMIQRKGYTSDEEL 360
+S G + EAS FPYAASSV+Y PPSTMD+AEKVAEA+ KLSRNVSMIQRKGYTSDEEL
Sbjct: 576 ESIGDRKLSEAS-FPYAASSVSYMPPSTMDIAEKVAEASAKLSRNVSMIQRKGYTSDEEL 634
Query: 361 EELDSPLTSIVDKTSEFNDSSTSNARYKLLRQVWA* 468
EELDSPLTSIVDK S+F S+TSNARYKLLRQVW *
Sbjct: 635 EELDSPLTSIVDKASDFTGSATSNARYKLLRQVWV* 670
Score = 69 bits (167), Expect = 2e-012
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 4 SITLSLIKRVLCNFTPDEFCPDHVPGAVLEELNAVE 111
SI+L LIKR+LCNFTPDEFCPD VPGAVLEELNA E
Sbjct: 541 SISLPLIKRILCNFTPDEFCPDQVPGAVLEELNAAE 576
>TAIR9_protein||AT2G42320.2 | Symbols: | nucleolar protein gar2-related |
chr2:17628102-17630657 FORWARD
Length = 670
Score = 148 bits (371), Expect = 4e-036
Identities = 76/96 (79%), Positives = 83/96 (86%), Gaps = 1/96 (1%)
Frame = +1
Query: 181 QSNGSEEEEEASFFPYAASSVTYKPPSTMDVAEKVAEAAGKLSRNVSMIQRKGYTSDEEL 360
+S G + EAS FPYAASSV+Y PPSTMD+AEKVAEA+ KLSRNVSMIQRKGYTSDEEL
Sbjct: 576 ESIGDRKLSEAS-FPYAASSVSYMPPSTMDIAEKVAEASAKLSRNVSMIQRKGYTSDEEL 634
Query: 361 EELDSPLTSIVDKTSEFNDSSTSNARYKLLRQVWA* 468
EELDSPLTSIVDK S+F S+TSNARYKLLRQVW *
Sbjct: 635 EELDSPLTSIVDKASDFTGSATSNARYKLLRQVWV* 670
Score = 69 bits (167), Expect = 2e-012
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 4 SITLSLIKRVLCNFTPDEFCPDHVPGAVLEELNAVE 111
SI+L LIKR+LCNFTPDEFCPD VPGAVLEELNA E
Sbjct: 541 SISLPLIKRILCNFTPDEFCPDQVPGAVLEELNAAE 576
>TAIR9_protein||AT3G57780.1 | Symbols: | EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3024
Blast hits to 2177 proteins in 255 species: Archae - 2; Bacteria - 181;
Metazoa - 988; Fungi - 289; Plants - 172; Viruses - 72; Other
Eukaryotes - 1320 (source: NCBI BLink). | chr3:21399766-21402326
REVERSE
Length = 671
Score = 85 bits (208), Expect = 3e-017
Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 2/71 (2%)
Frame = +1
Query: 193 SEEEEEASFFPYAASSVTYKPPSTMDVAEKVAEAAGKLSRNVSMIQRKGYTSDEELEELD 372
SE++ FPYAAS V+Y PPS+ +VAE ++SRNVSMIQRKGYTSD+ELEELD
Sbjct: 566 SEQKLSGVSFPYAASPVSYTPPSSTNVAE--VGDISRMSRNVSMIQRKGYTSDDELEELD 623
Query: 373 SPLTSIVDKTS 405
SPLTSI++ S
Sbjct: 624 SPLTSIIENVS 634
Score = 67 bits (163), Expect = 5e-012
Identities = 33/45 (73%), Positives = 37/45 (82%), Gaps = 4/45 (8%)
Frame = +1
Query: 4 SITLSLIKRVLCNFTPDEFCPDHVPGAVLEELNAVEVTQSIPESK 138
SI+L+LIKR+LCNFTPDEFCPD VPGAVLEELN +SI E K
Sbjct: 529 SISLALIKRILCNFTPDEFCPDDVPGAVLEELN----NESISEQK 569
>TAIR9_protein||AT5G06930.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:
15 plant structures; EXPRESSED DURING: 7 growth stages; BEST
Arabidopsis thaliana protein match is: nucleolar protein gar2-related
(TAIR:AT2G42320.2); Has 3144 Blast hits to 1363 proteins in 247
species: Archae - 2; Bacteria - 721; Metazoa - 835; Fungi - 297; Plants
- 80; Viruses - 10; Other Eukaryotes - 1199 (source: NCBI BLink). |
chr5:2145139-2147849 FORWARD
Length = 724
Score = 62 bits (150), Expect = 2e-010
Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 4/46 (8%)
Frame = +1
Query: 4 SITLSLIKRVLCNFTPDEFCPDHVPGAVLEELNAVEVTQSIPESKN 141
SI LSLIKR++CNFTPDEFCP VPG VLEELNA QSI E+++
Sbjct: 593 SIGLSLIKRIVCNFTPDEFCPYPVPGTVLEELNA----QSILENRS 634
>TAIR9_protein||AT3G01810.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is: nucleolar
protein gar2-related (TAIR:AT2G42320.2); Has 1293 Blast hits to 384
proteins in 97 species: Archae - 2; Bacteria - 96; Metazoa - 212; Fungi
- 99; Plants - 59; Viruses - 0; Other Eukaryotes - 825 (source: NCBI
BLink). | chr3:289218-292557 FORWARD
Length = 922
Score = 60 bits (143), Expect = 1e-009
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Frame = +1
Query: 175 IWQSNGSEEEEEASF---FPYAASSVTYKPPSTMDVAEKVAE----AAGKLSRNVSMIQR 333
+ +S SEEE E S +P A S Y PPS ++ + A +LSR S I R
Sbjct: 811 VLKSLESEEEAEKSIITSYPCTAPSPVYCPPSRTSISTIIGNFGQPQAPQLSRIRSSITR 870
Query: 334 KGYTSDEELEELDSPLTSIVDKTSEF----NDSSTSNARYKLLRQVW 462
K YTSD+EL+EL SPL +V + + N + RY+LLR+ W
Sbjct: 871 KAYTSDDELDELSSPLAVVVLQQAGSKKINNGDADETIRYQLLRECW 917
Score = 47 bits (110), Expect = 7e-006
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = +1
Query: 19 LIKRVLCNFTPDEFCPDHVPGAVLEELNAVE 111
LIKRVL NF PDEFCPD VP AVL+ L + E
Sbjct: 789 LIKRVLNNFVPDEFCPDPVPDAVLKSLESEE 819
>TAIR9_protein||AT5G43230.1 | Symbols: | unknown protein |
chr5:17349125-17352747 FORWARD
Length = 849
Score = 47 bits (109), Expect = 9e-006
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +1
Query: 175 IWQSNGSEEEEEA--SFFPYAASSVTYKPPSTMDVAEKVAEAAG-KLSRNVSMIQRKGYT 345
+ S G EE+ + FP AAS Y PST + + E +S S + +K YT
Sbjct: 736 VLNSEGLTEEDNGCITVFPSAASPTVYLMPSTDSIKRFIGELNNPSISETGSSVFKKQYT 795
Query: 346 SDEELEELDSPLTSIVDKTSEFNDS 420
SD+EL++LD+ + SI N S
Sbjct: 796 SDDELDDLDTSINSIFSAPGTTNSS 820
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,071,374,763
Number of Sequences: 33410
Number of Extensions: 26071374763
Number of Successful Extensions: 836367870
Number of sequences better than 0.0: 0
|
