BLASTX 7.6.2
Query= UN58053 /QuerySize=714
(713 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopep... 228 1e-057
gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing... 218 6e-055
gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana] 203 3e-050
gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT... 187 2e-045
gi|224071479|ref|XP_002303480.1| predicted protein [Populus tric... 109 5e-022
gi|225427665|ref|XP_002270963.1| PREDICTED: hypothetical protein... 105 9e-021
gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vini... 105 9e-021
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide
repeat-containing protein At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 228 bits (579), Expect = 1e-057
Identities = 129/195 (66%), Positives = 151/195 (77%), Gaps = 14/195 (7%)
Frame = +2
Query: 158 PKISSHVTSSHFLSPSPMNLRKFSRASETLTLRLRSTPHARRNFHITR----------SA 307
PKISS +TSSHF+S SPM+LR+ SRAS T RL+ +R+ FH +R +
Sbjct: 8 PKISSQMTSSHFISFSPMDLRRLSRASYLFTRRLKFIAKSRKCFHTSRYLQQCVHRPDKS 67
Query: 308 EEVSSDQQHLRLRLSAALSRRSLDYKHCKQLITTLSPREFDRLFPELKSKVNPKTALDFF 487
EE SSD +HL RLS+ LS+RSLDY+ CKQLIT LSP EFDRLFPE +SKVNPKTALDFF
Sbjct: 68 EETSSD-RHLHERLSSVLSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVNPKTALDFF 126
Query: 488 RLASSDSFGFSFSLRSYCLMIGLLLESNLLSPARLLLIRLINGSVPVLLRSDYDDSSRVA 667
RLA SDSF FSFSLRSYCL+IGLLL++NLLS AR++LIRLING+VPVL D SRVA
Sbjct: 127 RLA-SDSFSFSFSLRSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRD--SRVA 183
Query: 668 VADAMASLSSCFDQE 712
+ADAMASLS CFD+E
Sbjct: 184 IADAMASLSLCFDEE 198
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 825
Score = 218 bits (555), Expect = 6e-055
Identities = 124/189 (65%), Positives = 146/189 (77%), Gaps = 14/189 (7%)
Frame = +2
Query: 176 VTSSHFLSPSPMNLRKFSRASETLTLRLRSTPHARRNFHITR----------SAEEVSSD 325
+TSSHF+S SPM+LR+ SRAS T RL+ +R+ FH +R +EE SSD
Sbjct: 1 MTSSHFISFSPMDLRRLSRASYLFTRRLKFIAKSRKCFHTSRYLQQCVHRPDKSEETSSD 60
Query: 326 QQHLRLRLSAALSRRSLDYKHCKQLITTLSPREFDRLFPELKSKVNPKTALDFFRLASSD 505
+HL RLS+ LS+RSLDY+ CKQLIT LSP EFDRLFPE +SKVNPKTALDFFRLA SD
Sbjct: 61 -RHLHERLSSVLSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVNPKTALDFFRLA-SD 118
Query: 506 SFGFSFSLRSYCLMIGLLLESNLLSPARLLLIRLINGSVPVLLRSDYDDSSRVAVADAMA 685
SF FSFSLRSYCL+IGLLL++NLLS AR++LIRLING+VPVL D SRVA+ADAMA
Sbjct: 119 SFSFSFSLRSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRD--SRVAIADAMA 176
Query: 686 SLSSCFDQE 712
SLS CFD+E
Sbjct: 177 SLSLCFDEE 185
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 203 bits (514), Expect = 3e-050
Identities = 116/178 (65%), Positives = 136/178 (76%), Gaps = 14/178 (7%)
Frame = +2
Query: 209 MNLRKFSRASETLTLRLRSTPHARRNFHITR----------SAEEVSSDQQHLRLRLSAA 358
M+LR+ SRAS T RL+ +R+ FH +R +EE SSD +HL RLS+
Sbjct: 1 MDLRRLSRASYLFTRRLKFIAKSRKCFHTSRYLQQCVHRPDKSEETSSD-RHLHERLSSV 59
Query: 359 LSRRSLDYKHCKQLITTLSPREFDRLFPELKSKVNPKTALDFFRLASSDSFGFSFSLRSY 538
LS+RSLDY+ CKQLIT LSP EFDRLFPE +SKVNPKTALDFFRLA SDSF FSFSLRSY
Sbjct: 60 LSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVNPKTALDFFRLA-SDSFSFSFSLRSY 118
Query: 539 CLMIGLLLESNLLSPARLLLIRLINGSVPVLLRSDYDDSSRVAVADAMASLSSCFDQE 712
CL+IGLLL++NLLS AR++LIRLING+VPVL D SRVA+ADAMASLS CFD+E
Sbjct: 119 CLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRD--SRVAIADAMASLSLCFDEE 174
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917
[Arabidopsis lyrata subsp. lyrata]
Length = 817
Score = 187 bits (473), Expect = 2e-045
Identities = 102/151 (67%), Positives = 122/151 (80%), Gaps = 3/151 (1%)
Frame = +2
Query: 263 STPHARRNFHITRSAEEVSSDQQHLRLRLSAALSRRSLDYKHCKQLITTLSPREFDRLFP 442
+T + ++ H +EE+SSD +HL RLS+ LS+RSLDY+ CKQLIT LSP EFDRLFP
Sbjct: 29 TTRYLQQCVHRLDKSEEISSD-RHLHERLSSVLSKRSLDYEQCKQLITVLSPHEFDRLFP 87
Query: 443 ELKSKVNPKTALDFFRLASSDSFGFSFSLRSYCLMIGLLLESNLLSPARLLLIRLINGSV 622
E + KVNPKTALDFFRLA SDSF FSFSLRSYCL+IGLLL++NL SPAR++LIRLING+V
Sbjct: 88 EFRFKVNPKTALDFFRLA-SDSFSFSFSLRSYCLLIGLLLDANLSSPARVVLIRLINGNV 146
Query: 623 PVLLRSDYD-DSSRVAVADAMASLSSCFDQE 712
PVL + SRVA+ADAMASLS CFD+E
Sbjct: 147 PVLPCGNGGLRDSRVAIADAMASLSLCFDEE 177
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 109 bits (271), Expect = 5e-022
Identities = 62/126 (49%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Frame = +2
Query: 329 QHLRLRLSAALSRRSLDYKHCKQLITTLSPREFDRLFPELKSKVNPKTALDFFRLASSDS 508
Q L R+S LS SLD CK+L+ LSP+EFD F LKS VNPKTAL+FF S++
Sbjct: 55 QSLLKRVSLILSNPSLDCAKCKELVPHLSPQEFDSCFLALKSNVNPKTALNFFHFV-SET 113
Query: 509 FGFSFSLRSYCLMIGLLLESNLLSPARLLLIRLINGSVPVLLRSDYDDSSRVAVADAMAS 688
F F+ RSYC++I LL+ ++LLSPARLLLIRLI+G VP ++ +S +A MA
Sbjct: 114 CKFRFTARSYCVLIHLLVGNDLLSPARLLLIRLIDGKVPAFYARNF-ESRHFEIAQIMAD 172
Query: 689 LSSCFD 706
+ F+
Sbjct: 173 FNLVFE 178
>gi|225427665|ref|XP_002270963.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 893
Score = 105 bits (260), Expect = 9e-021
Identities = 69/167 (41%), Positives = 93/167 (55%), Gaps = 8/167 (4%)
Frame = +2
Query: 194 LSPSPMNLRKFSRASETLTLRLRSTPHARRNFHITRSAEEVSSDQQHLRLRLSAALSRRS 373
L P P + F + LT + PH S + S L +++ LS S
Sbjct: 74 LLPKPTPI--FCPIARPLTCVTSAAPHPPSPL---PSQNQPPSSDHALLKSVTSILSNPS 128
Query: 374 LDYKHCKQLITTLSPREFDRLFPELKSKVNPKTALDFFRLASSDSFGFSFSLRSYCLMIG 553
LD CKQLI LSP +FD +F ++ VNPKTAL+FF A SDS GF F+LRSYC+++
Sbjct: 129 LDSTQCKQLIPHLSPHQFDSVFFSVRRNVNPKTALNFFYFA-SDSCGFRFTLRSYCVLMR 187
Query: 554 LLLESNLLSPARLLLIRLINGSVPVLLRSDYDDSSRVAVADAMASLS 694
L+ S +SPARLLLIRLI+ +PVL + + +A AMA L+
Sbjct: 188 SLIVSGFVSPARLLLIRLIDRKLPVLFGD--PKNRHIEIASAMADLN 232
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 105 bits (260), Expect = 9e-021
Identities = 69/167 (41%), Positives = 93/167 (55%), Gaps = 8/167 (4%)
Frame = +2
Query: 194 LSPSPMNLRKFSRASETLTLRLRSTPHARRNFHITRSAEEVSSDQQHLRLRLSAALSRRS 373
L P P + F + LT + PH S + S L +++ LS S
Sbjct: 7 LLPKPTPI--FCPIARPLTCVTSAAPHPPSPL---PSQNQPPSSDHALLKSVTSILSNPS 61
Query: 374 LDYKHCKQLITTLSPREFDRLFPELKSKVNPKTALDFFRLASSDSFGFSFSLRSYCLMIG 553
LD CKQLI LSP +FD +F ++ VNPKTAL+FF A SDS GF F+LRSYC+++
Sbjct: 62 LDSTQCKQLIPHLSPHQFDSVFFSVRRNVNPKTALNFFYFA-SDSCGFRFTLRSYCVLMR 120
Query: 554 LLLESNLLSPARLLLIRLINGSVPVLLRSDYDDSSRVAVADAMASLS 694
L+ S +SPARLLLIRLI+ +PVL + + +A AMA L+
Sbjct: 121 SLIVSGFVSPARLLLIRLIDRKLPVLFGD--PKNRHIEIASAMADLN 165
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,993,367,703,379
Number of Sequences: 15229318
Number of Extensions: 5993367703379
Number of Successful Extensions: 1421579614
Number of sequences better than 0.0: 0
|
