BLASTX 7.6.2
Query= UN58204 /QuerySize=671
(670 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G42510.1 | Symbols: | FUNCTIONS IN: molecular... 112 2e-025
TAIR9_protein||AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular... 112 2e-025
TAIR9_protein||AT2G42510.3 | Symbols: | FUNCTIONS IN: molecular... 112 2e-025
TAIR9_protein||AT1G54380.1 | Symbols: | spliceosome protein-rel... 47 7e-006
>TAIR9_protein||AT2G42510.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via
spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro
DOMAIN/s: Survival motor neuron interacting protein 1
(InterPro:IPR007022); BEST Arabidopsis thaliana protein match is:
spliceosome protein-related (TAIR:AT1G54380.1); Has 294 Blast hits to
263 proteins in 60 species: Archae - 2; Bacteria - 35; Metazoa - 52;
Fungi - 12; Plants - 28; Viruses - 0; Other Eukaryotes - 165 (source:
NCBI BLink). | chr2:17701686-17704255 FORWARD
Length = 533
Score = 112 bits (279), Expect = 2e-025
Identities = 85/173 (49%), Positives = 106/173 (61%), Gaps = 31/173 (17%)
Frame = +1
Query: 154 KASISREDSAEEDSLKVVSLSLPLENDSVVE--ISSKNQVKSSPFDSVTGKEDSESIHPD 327
K SISR++ A EDSLK+VSL P+END VE IS K QVKSSPF SV K D E IH D
Sbjct: 15 KTSISRDEFA-EDSLKIVSLP-PVENDDSVEEMISPKKQVKSSPFTSVFEK-DGEIIHSD 71
Query: 328 SVELSLSEAQ-----AMDVDCPG--VLSVSEAASAFCEQNKVGEELQETKETSAAQ---- 474
S+++S SE AM+V+CPG V+SV E S E+NKVGEE++E+ E S +
Sbjct: 72 SIDISFSETTLEETVAMNVECPGVVVVSVPENGSTILEENKVGEEIKESSEISTTEGDRL 131
Query: 475 -DDVHKME---ETDVSVVC-----------KGQEDSDVERLLEAEKRRLLAEI 588
DDV K++ ETD VV K +DSD +R++EAEK L AEI
Sbjct: 132 GDDVLKIKDVVETDGFVVSISDMKESLNSEKKGQDSDGQRIVEAEKIILFAEI 184
>TAIR9_protein||AT2G42510.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via
spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro
DOMAIN/s: Survival motor neuron interacting protein 1
(InterPro:IPR007022); BEST Arabidopsis thaliana protein match is:
spliceosome protein-related (TAIR:AT1G54380.1). |
chr2:17701686-17704618 FORWARD
Length = 654
Score = 112 bits (279), Expect = 2e-025
Identities = 85/173 (49%), Positives = 106/173 (61%), Gaps = 31/173 (17%)
Frame = +1
Query: 154 KASISREDSAEEDSLKVVSLSLPLENDSVVE--ISSKNQVKSSPFDSVTGKEDSESIHPD 327
K SISR++ A EDSLK+VSL P+END VE IS K QVKSSPF SV K D E IH D
Sbjct: 15 KTSISRDEFA-EDSLKIVSLP-PVENDDSVEEMISPKKQVKSSPFTSVFEK-DGEIIHSD 71
Query: 328 SVELSLSEAQ-----AMDVDCPG--VLSVSEAASAFCEQNKVGEELQETKETSAAQ---- 474
S+++S SE AM+V+CPG V+SV E S E+NKVGEE++E+ E S +
Sbjct: 72 SIDISFSETTLEETVAMNVECPGVVVVSVPENGSTILEENKVGEEIKESSEISTTEGDRL 131
Query: 475 -DDVHKME---ETDVSVVC-----------KGQEDSDVERLLEAEKRRLLAEI 588
DDV K++ ETD VV K +DSD +R++EAEK L AEI
Sbjct: 132 GDDVLKIKDVVETDGFVVSISDMKESLNSEKKGQDSDGQRIVEAEKIILFAEI 184
>TAIR9_protein||AT2G42510.3 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via
spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro
DOMAIN/s: Survival motor neuron interacting protein 1
(InterPro:IPR007022); BEST Arabidopsis thaliana protein match is:
spliceosome protein-related (TAIR:AT1G54380.1). |
chr2:17701686-17703187 FORWARD
Length = 444
Score = 112 bits (279), Expect = 2e-025
Identities = 85/173 (49%), Positives = 106/173 (61%), Gaps = 31/173 (17%)
Frame = +1
Query: 154 KASISREDSAEEDSLKVVSLSLPLENDSVVE--ISSKNQVKSSPFDSVTGKEDSESIHPD 327
K SISR++ A EDSLK+VSL P+END VE IS K QVKSSPF SV K D E IH D
Sbjct: 15 KTSISRDEFA-EDSLKIVSLP-PVENDDSVEEMISPKKQVKSSPFTSVFEK-DGEIIHSD 71
Query: 328 SVELSLSEAQ-----AMDVDCPG--VLSVSEAASAFCEQNKVGEELQETKETSAAQ---- 474
S+++S SE AM+V+CPG V+SV E S E+NKVGEE++E+ E S +
Sbjct: 72 SIDISFSETTLEETVAMNVECPGVVVVSVPENGSTILEENKVGEEIKESSEISTTEGDRL 131
Query: 475 -DDVHKME---ETDVSVVC-----------KGQEDSDVERLLEAEKRRLLAEI 588
DDV K++ ETD VV K +DSD +R++EAEK L AEI
Sbjct: 132 GDDVLKIKDVVETDGFVVSISDMKESLNSEKKGQDSDGQRIVEAEKIILFAEI 184
>TAIR9_protein||AT1G54380.1 | Symbols: | spliceosome protein-related |
chr1:20298287-20300899 REVERSE
Length = 516
Score = 47 bits (111), Expect = 7e-006
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Frame = +1
Query: 439 ELQETKETS----AAQDDVHKMEETDVSVVCKGQEDSDVERLLEAEKRRLLAEIETGAIF 606
+LQE KE+S + Q V E ++ K QE S+ +RLLEAEKRRLLAEIE G+IF
Sbjct: 61 DLQEIKESSFSKGSEQYRVDGALEESLNFEEKEQE-SEAQRLLEAEKRRLLAEIELGSIF 119
Query: 607 RR 612
R+
Sbjct: 120 RK 121
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,727,740,123
Number of Sequences: 33410
Number of Extensions: 26727740123
Number of Successful Extensions: 867613076
Number of sequences better than 0.0: 0
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