BLASTX 7.6.2
Query= UN58796 /QuerySize=684
(683 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll... 381 2e-106
TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll... 381 2e-106
TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll... 306 1e-083
TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll... 300 5e-082
TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVE... 105 3e-023
TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll... 99 2e-021
TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; ... 99 3e-021
TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; ... 99 3e-021
TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB... 97 1e-020
TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB... 97 1e-020
TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1... 97 1e-020
TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light h... 97 1e-020
TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; ... 95 3e-020
TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; ... 95 3e-020
TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | ... 94 9e-020
TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; ch... 90 1e-018
TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment bin... 89 2e-018
TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment bin... 89 2e-018
TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT... 83 2e-016
TAIR9_protein||AT1G15820.1 | Symbols: LHCB6, CP24 | LHCB6 (LIGHT... 77 9e-015
>TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 242
Score = 381 bits (978), Expect = 2e-106
Identities = 182/190 (95%), Positives = 185/190 (97%)
Frame = +1
Query: 82 MASNSLMSCGIAAVYPSLLSSSKSKFVSSGFALPNAGNVGRIRMAAHWMPGEPRPAYLDG 261
MASNSLMSCGIAAVYPSLLSSSKSKFVS+G LPNAGNVGRIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 262 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 441
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 442 VPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEEKKYPGGAFDPLGYSKD 621
+PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPE+KKYPGGAFDPLGYSKD
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 180
Query: 622 PKNFEELKVK 651
PK EELKVK
Sbjct: 181 PKKLEELKVK 190
>TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339881-20340922 REVERSE
Length = 214
Score = 381 bits (978), Expect = 2e-106
Identities = 182/190 (95%), Positives = 185/190 (97%)
Frame = +1
Query: 82 MASNSLMSCGIAAVYPSLLSSSKSKFVSSGFALPNAGNVGRIRMAAHWMPGEPRPAYLDG 261
MASNSLMSCGIAAVYPSLLSSSKSKFVS+G LPNAGNVGRIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 262 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 441
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 442 VPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEEKKYPGGAFDPLGYSKD 621
+PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPE+KKYPGGAFDPLGYSKD
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 180
Query: 622 PKNFEELKVK 651
PK EELKVK
Sbjct: 181 PKKLEELKVK 190
>TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 208
Score = 306 bits (782), Expect = 1e-083
Identities = 146/151 (96%), Positives = 148/151 (98%)
Frame = +1
Query: 82 MASNSLMSCGIAAVYPSLLSSSKSKFVSSGFALPNAGNVGRIRMAAHWMPGEPRPAYLDG 261
MASNSLMSCGIAAVYPSLLSSSKSKFVS+G LPNAGNVGRIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 262 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 441
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 442 VPGGQATYLGNPVPWGTLPTILAIEFLAIAF 534
+PGGQATYLGNPVPWGTLPTILAIEFLAIAF
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAF 151
>TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339961-20340922 REVERSE
Length = 165
Score = 300 bits (768), Expect = 5e-082
Identities = 143/148 (96%), Positives = 145/148 (97%)
Frame = +1
Query: 82 MASNSLMSCGIAAVYPSLLSSSKSKFVSSGFALPNAGNVGRIRMAAHWMPGEPRPAYLDG 261
MASNSLMSCGIAAVYPSLLSSSKSKFVS+G LPNAGNVGRIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 262 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 441
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 442 VPGGQATYLGNPVPWGTLPTILAIEFLA 525
+PGGQATYLGNPVPWGTLPTILAIEFLA
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLA 148
>TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX
OF PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408200-6409496
FORWARD
Length = 281
Score = 105 bits (261), Expect = 3e-023
Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Frame = +1
Query: 244 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 414
P YL+G GD+G+DP GLG+ PEN +Y+ ELIH RWAML G ++PEAL YG
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 415 -----WVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR-SMEKDPEEK 576
W K + G Y G +P + ++A E + + E+ R + D E+K
Sbjct: 142 GPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDK 199
Query: 577 KYPGGAFDPLGYSKDPKNFEELKVK 651
+PGG FDPLG +KDP+ LKVK
Sbjct: 200 LHPGGPFDPLGLAKDPEQGALLKVK 224
>TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll binding |
chr3:22745736-22747032 FORWARD
Length = 258
Score = 99 bits (246), Expect = 2e-021
Identities = 74/218 (33%), Positives = 101/218 (46%), Gaps = 42/218 (19%)
Frame = +1
Query: 82 MASNSLMSCGIAAV-YPSLLSSS----KSKFVSSGFALPNAGNVGRIRMAAH------WM 228
MAS+ S IAA+ PS L K K + P+A +R A W
Sbjct: 1 MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDAS----VRAVAADPDRPIWF 56
Query: 229 PGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGY 408
PG P +LDGS PGDFGFDPLGL P++L+ ++E++HCRWAML GI +PE L
Sbjct: 57 PGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTK 116
Query: 409 GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKD 564
+ W G+ Y + T+ +E + I + E +R S+ D
Sbjct: 117 IGILNTPSW--YTAGEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTD 168
Query: 565 P---------EEKKYPGGA-FDPLGY-SKDPKNFEELK 645
P + YPGG FDPLG+ S P +EL+
Sbjct: 169 PVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELR 206
>TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll
binding | chr2:14524818-14525618 FORWARD
Length = 267
Score = 99 bits (244), Expect = 3e-021
Identities = 64/151 (42%), Positives = 79/151 (52%), Gaps = 15/151 (9%)
Frame = +1
Query: 232 GEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 402
GEP P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 403 ----GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKD 564
G W KA GG YLGNP V ++ I A + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180
Query: 565 P----EEKKYPGGAFDPLGYSKDPKNFEELK 645
P E+ YPGG+FDPLG + DP+ F ELK
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELK 211
>TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll
binding | chr2:14522716-14523513 REVERSE
Length = 266
Score = 99 bits (244), Expect = 3e-021
Identities = 64/151 (42%), Positives = 79/151 (52%), Gaps = 15/151 (9%)
Frame = +1
Query: 232 GEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 402
GEP P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 403 ----GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKD 564
G W KA GG YLGNP V ++ I A + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 179
Query: 565 P----EEKKYPGGAFDPLGYSKDPKNFEELK 645
P E+ YPGG+FDPLG + DP+ F ELK
Sbjct: 180 PLGEAEDLLYPGGSFDPLGLATDPEAFAELK 210
>TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL
A/B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-10473246
REVERSE
Length = 268
Score = 97 bits (239), Expect = 1e-020
Identities = 61/147 (41%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Frame = +1
Query: 244 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 402
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 403 GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP--- 567
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 568 -EEKKYPGGAFDPLGYSKDPKNFEELK 645
E+ YPGG+FDPLG + DP+ F ELK
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELK 212
>TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL
A/B-BINDING PROTEIN 2); chlorophyll binding | chr1:10475089-10475892
REVERSE
Length = 268
Score = 97 bits (239), Expect = 1e-020
Identities = 61/147 (41%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Frame = +1
Query: 244 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 402
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 403 GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP--- 567
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 568 -EEKKYPGGAFDPLGYSKDPKNFEELK 645
E+ YPGG+FDPLG + DP+ F ELK
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELK 212
>TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1
(CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding |
chr1:10478071-10478874 FORWARD
Length = 268
Score = 97 bits (239), Expect = 1e-020
Identities = 61/147 (41%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Frame = +1
Query: 244 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 402
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 403 GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP--- 567
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 568 -EEKKYPGGAFDPLGYSKDPKNFEELK 645
E+ YPGG+FDPLG + DP+ F ELK
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELK 212
>TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light harvesting
complex PSII); chlorophyll binding | chr2:16745884-16747190 FORWARD
Length = 277
Score = 97 bits (239), Expect = 1e-020
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Frame = +1
Query: 319 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNPVPWGTLP 498
++R++E ELIH RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 134 IQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG--SSYLGQPLPF-SLT 190
Query: 499 TILAIEFLAIAFVEHQRSMEKDPEEKKYPGGAFDPLGYSKDPKNFEELK---VKRSR 660
T++ IE L + ++E QR+ E DPE++ YPGG FDPLG + DP+ + LK +K SR
Sbjct: 191 TLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSR 247
>TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll
binding | chr2:1823449-1824331 REVERSE
Length = 266
Score = 95 bits (235), Expect = 3e-020
Identities = 59/150 (39%), Positives = 78/150 (52%), Gaps = 13/150 (8%)
Frame = +1
Query: 235 EPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 402
E P+YL G PGD+G+D GL PE + +E E+IH RWAML G PE L
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 403 ---GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR---SME 558
G W KA GG YLGNP + ++ I A++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 559 KDPEEKKYPGGAFDPLGYSKDPKNFEELKV 648
+ + YPGGAFDPL ++DP+ F ELKV
Sbjct: 182 GEGLDPLYPGGAFDPLNLAEDPEAFSELKV 211
>TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll
binding | chr2:1799436-1800329 REVERSE
Length = 266
Score = 95 bits (235), Expect = 3e-020
Identities = 59/150 (39%), Positives = 78/150 (52%), Gaps = 13/150 (8%)
Frame = +1
Query: 235 EPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 402
E P+YL G PGD+G+D GL PE + +E E+IH RWAML G PE L
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 403 ---GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR---SME 558
G W KA GG YLGNP + ++ I A++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 559 KDPEEKKYPGGAFDPLGYSKDPKNFEELKV 648
+ + YPGGAFDPL ++DP+ F ELKV
Sbjct: 182 GEGLDPLYPGGAFDPLNLAEDPEAFSELKV 211
>TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3;
chlorophyll binding | chr3:10256002-10256921 FORWARD
Length = 267
Score = 94 bits (231), Expect = 9e-020
Identities = 59/150 (39%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Frame = +1
Query: 235 EPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 402
E P+YL G PGD+G+D GL PE + +E E+IH RWAML G PE L
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 403 ---GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR---SME 558
G W KA GG YLGNP + ++ I A + + + F+E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPL 182
Query: 559 KDPEEKKYPGGAFDPLGYSKDPKNFEELKV 648
+ + YPGGAFDPL ++DP+ F ELKV
Sbjct: 183 GEGLDPLYPGGAFDPLNLAEDPEAFSELKV 212
>TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; chlorophyll
binding | chr1:6612806-6613799 FORWARD
Length = 271
Score = 90 bits (221), Expect = 1e-018
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = +1
Query: 223 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 402
W PG P +LDGS PGDFGFDPLGLG P+ L+ + ++ELIH RWAMLAV GI++PE L
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127
Query: 403 GYGNWVKAQEW 435
+++ W
Sbjct: 128 ERLGFIENFSW 138
>TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 89 bits (220), Expect = 2e-018
Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 34/162 (20%)
Frame = +1
Query: 217 AHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPE 396
A W+PG P YLDG+ GD+GFDPLGLGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 397 AL---GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME--- 558
L G N E AV + + T++ ++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 559 -----------------KDPEEKKYPGG-AFDPLGYSKDPKN 630
+ E YPGG +PLG +KD +N
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQN 198
>TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 89 bits (220), Expect = 2e-018
Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 34/162 (20%)
Frame = +1
Query: 217 AHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPE 396
A W+PG P YLDG+ GD+GFDPLGLGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 397 AL---GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME--- 558
L G N E AV + + T++ ++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 559 -----------------KDPEEKKYPGG-AFDPLGYSKDPKN 630
+ E YPGG +PLG +KD +N
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQN 198
>TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING
CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding |
chr3:17493622-17494773 REVERSE
Length = 252
Score = 83 bits (203), Expect = 2e-016
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Frame = +1
Query: 223 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 402
W+PG P YL GS GD GFDPLGL E PENL+ + ++EL++ RWAML V G+L+PE
Sbjct: 57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116
Query: 403 GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTIL--AIEFLAIAFVEHQRSMEKDPEEK 576
+ EW G+ Y + + IL +E +++ S+ +DP K
Sbjct: 117 TKIGIINVPEW--YDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 174
Query: 577 KY--PGGAFDPLGYSKDPKNF 633
+Y P G G +P NF
Sbjct: 175 QYSLPKGEVGYPGGIFNPLNF 195
>TAIR9_protein||AT1G15820.1 | Symbols: LHCB6, CP24 | LHCB6 (LIGHT HARVESTING
COMPLEX PSII SUBUNIT 6); chlorophyll binding | chr1:5446685-5447676
REVERSE
Length = 259
Score = 77 bits (188), Expect = 9e-015
Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Frame = +1
Query: 148 KSKFVSSGFALPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLER 327
K+ V++ A P + ++ +++ P +LDGS PGDFGFDPLGLG+ P L+
Sbjct: 42 KTLIVAAAAAQPKKSWIPAVKGGGNFLD----PEWLDGSLPGDFGFDPLGLGKDPAFLKW 97
Query: 328 YKESELIHCRWAMLAVPGILVPEALGYGNWVK--AQEWAAVPGGQATYLG 471
Y+E+ELIH RWAM AV GI V +A W + AQ A P + LG
Sbjct: 98 YREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLG 147
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,989,008,774
Number of Sequences: 33410
Number of Extensions: 26989008774
Number of Successful Extensions: 883720788
Number of sequences better than 0.0: 0
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