BLASTX 7.6.2
Query= UN59203 /QuerySize=778
(777 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=S... 193 1e-048
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic O... 106 2e-022
sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=... 104 9e-022
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=... 104 1e-021
sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic ... 103 2e-021
sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic O... 89 4e-017
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 84 7e-016
sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=... 83 2e-015
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=... 80 1e-014
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=... 79 2e-014
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=... 75 4e-013
sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=... 74 7e-013
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=M... 63 2e-009
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia
oleracea GN=PSRP2 PE=1 SV=1
Length = 260
Score = 193 bits (489), Expect = 1e-048
Identities = 100/167 (59%), Positives = 124/167 (74%), Gaps = 11/167 (6%)
Frame = +1
Query: 190 PFLLSPRATLETE----EKPALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQ 357
P LL RA + E + + E +RR+Y+GNIPR + N++L +VEEHGA+E +
Sbjct: 55 PPLLKVRAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAE 114
Query: 358 VMYDKYSGRSRRFGFATMKSVEDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSSSP 537
VMYDKYSGRSRRFGF TMK+VEDANAVIEKLN T I GR++KVNITEKPLE
Sbjct: 115 VMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLE-------GM 167
Query: 538 DLSLLQSEDSAFVDSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAK 678
D++ Q+EDS FV+SPYKVY+GNLAK+VT E+L++ FSEKGKVL AK
Sbjct: 168 DIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAK 214
Score = 63 bits (151), Expect = 2e-009
Identities = 31/78 (39%), Positives = 46/78 (58%)
Frame = +1
Query: 256 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANA 435
ES +VYIGN+ +TVTNE L E G V +V + +S FGF + S E+ A
Sbjct: 181 ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEA 240
Query: 436 VIEKLNGTTIEGREVKVN 489
I+ LN + +EG++++VN
Sbjct: 241 AIQALNNSVLEGQKIRVN 258
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana
sylvestris PE=2 SV=1
Length = 273
Score = 106 bits (263), Expect = 2e-022
Identities = 58/143 (40%), Positives = 83/143 (58%), Gaps = 6/143 (4%)
Frame = +1
Query: 250 NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDA 429
N ++++GN+P + + L +L E G VE V+V+YDK +GRSR FGF TM S E+
Sbjct: 82 NFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEV 141
Query: 430 NAVIEKLNGTTIEGREVKVNITEKPLELSSSSSSSPDLSLLQSEDSAFVDSPYKVYVGNL 609
A ++ NG ++GR ++VN P + +SS S DS +VYVGNL
Sbjct: 142 EAACQQFNGYELDGRALRVNSGPPPEKRENSSFRG------GSRGGGSFDSSNRVYVGNL 195
Query: 610 AKSVTKEMLENLFSEKGKVLSAK 678
A V ++ LE LFSE+GKV+ AK
Sbjct: 196 AWGVDQDALETLFSEQGKVVDAK 218
Score = 73 bits (178), Expect = 2e-012
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +1
Query: 256 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANA 435
+SS RVY+GN+ V + L L E G V +V+YD+ SGRSR FGF T S E+ N
Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 244
Query: 436 VIEKLNGTTIEGREVKVNITE 498
IE L+G + GR ++V+ E
Sbjct: 245 AIESLDGVDLNGRAIRVSPAE 265
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 104 bits (258), Expect = 9e-022
Identities = 57/143 (39%), Positives = 82/143 (57%)
Frame = +1
Query: 250 NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDA 429
N ++++GN+ + + L +L E G VE V+V+YDK +GRSR FGF TM S E+
Sbjct: 82 NFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEV 141
Query: 430 NAVIEKLNGTTIEGREVKVNITEKPLELSSSSSSSPDLSLLQSEDSAFVDSPYKVYVGNL 609
A ++ NG ++GR ++VN P + +SS S DS +VYVGNL
Sbjct: 142 EAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNL 201
Query: 610 AKSVTKEMLENLFSEKGKVLSAK 678
A V ++ LE LFSE+GKV+ AK
Sbjct: 202 AWGVDQDALETLFSEQGKVVDAK 224
Score = 73 bits (178), Expect = 2e-012
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +1
Query: 256 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANA 435
+SS RVY+GN+ V + L L E G V +V+YD+ SGRSR FGF T S E+ N
Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 250
Query: 436 VIEKLNGTTIEGREVKVNITE 498
IE L+G + GR ++V+ E
Sbjct: 251 AIESLDGVDLNGRAIRVSPAE 271
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 324
Score = 104 bits (257), Expect = 1e-021
Identities = 59/161 (36%), Positives = 94/161 (58%), Gaps = 5/161 (3%)
Frame = +1
Query: 199 LSPRATLETEEK-PALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKY 375
LS E EEK ++ + R+Y+GN+P ++T+ QL+++ E G V V+++YD+
Sbjct: 91 LSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRV 150
Query: 376 SGRSRRFGFATMKSVEDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSSSPDLSLLQ 555
+ RSR F F TM SVE+A I +G+ + GR VKVN E P S+ ++
Sbjct: 151 TDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAK----IR 206
Query: 556 SEDSAFVDSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAK 678
S FVDSP+K+YV NL+ ++T + L + F+++ +SAK
Sbjct: 207 STYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAK 247
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis
thaliana GN=At2g37220 PE=1 SV=1
Length = 289
Score = 103 bits (255), Expect = 2e-021
Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Frame = +1
Query: 235 PALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMK 414
P + + + ++++GN+P V + QL +L E G VE V+V+YDK +GRSR FGF TM
Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140
Query: 415 SVEDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSSSPDLSLLQSED------SAFV 576
SV + A ++ NG ++GR ++VN P + S P S S +
Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGA 200
Query: 577 DSPYKVYVGNLAKSVTKEMLENLFSEKGKVLSAK 678
S +VYVGNL+ V LE+LFSE+GKV+ A+
Sbjct: 201 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Score = 66 bits (160), Expect = 2e-010
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +1
Query: 253 AESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDAN 432
A S RVY+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T S ++
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 433 AVIEKLNGTTIEGREVKVNITE 498
I+ L+G ++GR+++V+ E
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAE 281
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana
sylvestris PE=2 SV=1
Length = 291
Score = 89 bits (218), Expect = 4e-017
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Frame = +1
Query: 94 LSFQSNPHSSHS---TPSPPPLCNLKPMHSLPRPKPFLLSPRATLETEEKPALDPNAESS 264
LSF S P SS + + S LC++KP S + LS LE + + A P
Sbjct: 28 LSFFSLPSSSLNLSLSSSSTGLCSIKPFESSFSTR-VALSGFDQLEDDVEVAEQPRFSED 86
Query: 265 RRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAVIE 444
++++GN+P +V + L L E G VE V+V+YDK +GRSR FGF TM + E+ A +
Sbjct: 87 LKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQ 146
Query: 445 KLNGTTIEGREVKVNITEKPLELSSSS 525
+ NG I+GR ++VN P + +SS
Sbjct: 147 QFNGYEIDGRAIRVNAGPAPAKRENSS 173
Score = 73 bits (178), Expect = 2e-012
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +1
Query: 250 NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDA 429
+ +SS RVY+GN+ V + L +L E G V +V+YD+ SGRSR FGF T S ++
Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEV 261
Query: 430 NAVIEKLNGTTIEGREVKVNITEK 501
N I+ LNG ++GR ++V+ E+
Sbjct: 262 NDAIDSLNGVDLDGRSIRVSAAEE 285
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP31 PE=1 SV=1
Length = 329
Score = 84 bits (207), Expect = 7e-016
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +1
Query: 256 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANA 435
E + RVY+GN+P V N +L +L EHG V + +V+YD+ +GRSR FGF TM V++ N
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 436 VIEKLNGTTIEGREVKVNITEK 501
I L+G +EGR ++VN+ E+
Sbjct: 301 AISALDGQNLEGRAIRVNVAEE 322
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 83 bits (203), Expect = 2e-015
Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Frame = +1
Query: 94 LSFQSNPHS----SHSTPSPPPLCNLKPMHSLPRPKPFLLSPRATLETEEKPALDPNAES 261
LSF S P S S S+ S ++KP S + LS LE + + A P
Sbjct: 28 LSFFSLPSSSLNLSLSSSSIGHSASIKPFESSFSTR-VALSDFDQLEDDVEVAEQPRFSE 86
Query: 262 SRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAVI 441
++++GN+P +V + L L E G VE V+V+YDK SGRSR FGF TM + E+ A
Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAE 146
Query: 442 EKLNGTTIEGREVKVNITEKPLELSSSS 525
++ NG I+GR ++VN P + +SS
Sbjct: 147 QQFNGYEIDGRAIRVNAGPAPAKRENSS 174
Score = 74 bits (179), Expect = 1e-012
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +1
Query: 250 NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDA 429
+ +SS RVY+GN+ V + L +L E G V +V+YD+ SGRSR FGF T S ++
Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEV 262
Query: 430 NAVIEKLNGTTIEGREVKVNITEK 501
N I+ LNG ++GR ++V+ E+
Sbjct: 263 NDAIDSLNGIDLDGRSIRVSAAEE 286
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 315
Score = 80 bits (197), Expect = 1e-014
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +1
Query: 196 LLSPRATLETEEKPALDPNA-ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDK 372
LL+ E+P P E S R+Y+GNIP + + +L +L EHG V +V+YD+
Sbjct: 206 LLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDR 265
Query: 373 YSGRSRRFGFATMKSVEDANAVIEKLNGTTIEGREVKVNITE 498
+GRSR FGF TM S + + I L+G +++GR ++VN+ E
Sbjct: 266 ETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 233
Score = 79 bits (194), Expect = 2e-014
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Frame = +1
Query: 202 SPRATLETEEKPALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSG 381
+PR + E + +P S RVY+GN+P V +L +L EHG V +V+ D+ +G
Sbjct: 132 APRGSPERAPRGDFEP----SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETG 187
Query: 382 RSRRFGFATMKSVEDANAVIEKLNGTTIEGREVKVNITEK 501
RSR FGF TM S + N I L+G T++GR V+VN+ E+
Sbjct: 188 RSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 276
Score = 75 bits (183), Expect = 4e-013
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +1
Query: 268 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAVIEK 447
R+Y+GNIP + + +L ++ EHG V +V++D+ SGRSR FGF TM S + + I
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 448 LNGTTIEGREVKVNITEK 501
L+G T++GR ++VN E+
Sbjct: 252 LDGQTLDGRTIRVNAAEE 269
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP29 PE=1 SV=2
Length = 342
Score = 74 bits (181), Expect = 7e-013
Identities = 36/90 (40%), Positives = 53/90 (58%)
Frame = +1
Query: 268 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAVIEK 447
++++GN+ V + QL +L E G VE V+V+YDK +GRSR FGF TM + + A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 448 LNGTTIEGREVKVNITEKPLELSSSSSSSP 537
NG EGR ++VN P + S S P
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGP 189
Score = 68 bits (164), Expect = 7e-011
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +1
Query: 259 SSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAV 438
S R+Y+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T+ S ++
Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
Query: 439 IEKLNGTTIEGREVKVNITE 498
I LNG ++GR+++V+ E
Sbjct: 315 INSLNGADLDGRQIRVSEAE 334
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus
GN=Cstf2 PE=1 SV=2
Length = 580
Score = 63 bits (151), Expect = 2e-009
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Frame = +1
Query: 235 PALDPNAESS-RRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATM 411
P DP + S R V++GNIP T EQL + E G V +++YD+ +G+ + +GF
Sbjct: 5 PVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
Query: 412 KSVEDANAVIEKLNGTTIEGREVKVN--ITEK-PLELSSSSSSSPDLSLLQSEDSAFVDS 582
+ E A + + LNG GR ++V+ +EK EL S + +P + E + D+
Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGESISPEDA 124
Query: 583 PYKV 594
P +
Sbjct: 125 PESI 128
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,982,208,808
Number of Sequences: 518415
Number of Extensions: 210982208808
Number of Successful Extensions: 1289689628
Number of sequences better than 0.0: 0
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