BLASTX 7.6.2
Query= UN59388 /QuerySize=709
(708 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G02400.1 | Symbols: | FUNCTIONS IN: molecular... 320 5e-088
TAIR9_protein||AT5G08600.1 | Symbols: | U3 ribonucleoprotein (U... 274 5e-074
TAIR9_protein||AT5G36980.1 | Symbols: | FUNCTIONS IN: molecular... 59 2e-009
TAIR9_protein||AT5G63740.1 | Symbols: | zinc finger protein-rel... 55 4e-008
>TAIR9_protein||AT4G02400.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit
processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome,
Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is:
U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.1); Has 7412
Blast hits to 4272 proteins in 301 species: Archae - 10; Bacteria -
517; Metazoa - 2926; Fungi - 722; Plants - 242; Viruses - 149; Other
Eukaryotes - 2846 (source: NCBI BLink). | chr4:1054243-1057884 FORWARD
Length = 856
Score = 320 bits (820), Expect = 5e-088
Identities = 163/216 (75%), Positives = 192/216 (88%), Gaps = 8/216 (3%)
Frame = -3
Query: 646 KRKSSSSAKSVAKSKKKKKGPHLPNSILKVIADQKRPLNSDEEEEEDEIDSDDEHGGDLY 467
KRKS+S K++AK+ KK+KGPHLPNSILK IA++KRPLNSD E++DEIDSDDE+ DLY
Sbjct: 4 KRKSTS--KTLAKN-KKRKGPHLPNSILKTIANEKRPLNSD--EDDDEIDSDDEN-VDLY 57
Query: 466 EYEEGVPEEESRKNNRYDRHDNYDYELPDDFEDENVESEDDDVDGGNSENDD-DDDDDRH 290
EYEEGVPEEES+KNNRYDR DNYDYELP+DFEDENVES DDD DGGNSEN++ + DDDRH
Sbjct: 58 EYEEGVPEEESKKNNRYDRVDNYDYELPEDFEDENVES-DDDEDGGNSENEEGEGDDDRH 116
Query: 289 TRMLQSLTGMPSAAFQGESKSKPVLFTEAYPEGEFNPTRDVLEGKNVLTEEDFLAPLEGK 110
TRMLQ LTGMPSAAFQ ESK +PVL+TEAYPE EFNPTRDVLEGK +++ ED LAPLEGK
Sbjct: 117 TRMLQGLTGMPSAAFQEESKKRPVLYTEAYPESEFNPTRDVLEGKGLISVEDLLAPLEGK 176
Query: 109 PGYHKTSRQIARMRKDTKHVVHAPLPKPQRERLEKK 2
PG++ +++I RM+KDT+ VVHAPLPKP+RERLE+K
Sbjct: 177 PGFNDLNKRINRMQKDTQSVVHAPLPKPERERLERK 212
>TAIR9_protein||AT5G08600.1 | Symbols: | U3 ribonucleoprotein (Utp) family
protein | chr5:2786298-2789736 FORWARD
Length = 823
Score = 274 bits (699), Expect = 5e-074
Identities = 140/217 (64%), Positives = 175/217 (80%), Gaps = 13/217 (5%)
Frame = -3
Query: 655 GGLKRKSSSSAKSVAKSKKKKKGPHLPNSILKVIADQKRPLNSDEEEEEDEIDSDDEHGG 476
GG KRK SS K++A +KK++ GPHLP+SILK IA++KRPLNSD E +DEIDS G
Sbjct: 3 GGEKRK--SSFKNLANAKKRRTGPHLPSSILKTIANEKRPLNSD--EGDDEIDS---AYG 55
Query: 475 DLYEYEEGVPEEESRKNNRYDRHDNYDYELPDDFEDENVESEDDDVDGGNSENDDDDDDD 296
D YEYEEGVPEEESRKNNRY+R NY++EL +D EDENVESEDDD ++DDDDDDD
Sbjct: 56 DFYEYEEGVPEEESRKNNRYERVVNYEFELAEDCEDENVESEDDD------DDDDDDDDD 109
Query: 295 RHTRMLQSLTGMPSAAFQGESKSKPVLFTEAYPEGEFNPTRDVLEGKNVLTEEDFLAPLE 116
RH+RML+++T +P +AFQGESK+K V+FTE YPE EFNPTRDVLEGK++ T +DF+ PL+
Sbjct: 110 RHSRMLKNVTELPISAFQGESKNKRVVFTEPYPESEFNPTRDVLEGKSLTTIDDFMEPLQ 169
Query: 115 GKPGYHKTSRQIARMRKDTKHVVHAPLPKPQRERLEK 5
G G + S I+RMRKDT+ +VHAPLPKP++ERLE+
Sbjct: 170 GLHGNSQLSNMISRMRKDTQSLVHAPLPKPEQERLER 206
>TAIR9_protein||AT5G36980.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit
processome; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14
(InterPro:IPR006709); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02400.1); Has 12 Blast hits to 12 proteins in
3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:14606980-14607754 REVERSE
Length = 154
Score = 59 bits (142), Expect = 2e-009
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Frame = -3
Query: 400 YDYE--LPDDFEDENVESEDDDVDGGNSENDDDDDDDRHTRMLQSLTGMPSAAFQG--ES 233
Y+YE +P++ +N + D+ N +++ + DDDRHTRMLQ LTGMPSAAFQ ES
Sbjct: 39 YEYEEGVPEEESKKNNRYDRDETVESNDDDEAEGDDDRHTRMLQGLTGMPSAAFQAYPES 98
Query: 232 KSKPVLFTE 206
+ K ++ E
Sbjct: 99 EGKGLISVE 107
Score = 52 bits (124), Expect = 2e-007
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 5/43 (11%)
Frame = -3
Query: 472 LYEYEEGVPEEESRKNNRYDRHDNYDYELPDDFEDENVESEDD 344
LYEYEEGVPEEES+KNNRYDR E + +D+ E +DD
Sbjct: 38 LYEYEEGVPEEESKKNNRYDRD-----ETVESNDDDEAEGDDD 75
Score = 51 bits (121), Expect = 5e-007
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Frame = -3
Query: 640 KSSSSAKSVAKSKKKKKGPHLPNSILKVIADQKRPLNSDEEEEEDEIDSDDEHGGDLYEY 461
K +++K++AK+ K+KGP+LPNSILK+IA++KRPL EE +E +S + D E
Sbjct: 4 KRRTTSKTLAKN-NKRKGPYLPNSILKIIANEKRPLYEYEEGVPEE-ESKKNNRYDRDET 61
Query: 460 EEGVPEEESRKNNRYDRH 407
E ++E+ ++ DRH
Sbjct: 62 VESNDDDEAEGDD--DRH 77
>TAIR9_protein||AT5G63740.1 | Symbols: | zinc finger protein-related |
chr5:25510776-25511456 REVERSE
Length = 227
Score = 55 bits (131), Expect = 4e-008
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = -3
Query: 526 DEEEEEDEIDSDDEHGGDLYEYEEGVPEEESRKNNRYDRHDNYDYELPDDFEDENVESED 347
D+ + E D D + GD E E+ +E+ ++ D D+ D + DD +D + + +D
Sbjct: 53 DDHNNDGEGDGDGDGDGDEDEDEDADADEDEDEDEDEDDDDDDDDDDDDDADDADDDEDD 112
Query: 346 DDVDGGNSENDDDDDDDRH 290
DD D E+DDDDDDD +
Sbjct: 113 DDEDDDEDEDDDDDDDDEN 131
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,270,580,556
Number of Sequences: 33410
Number of Extensions: 27270580556
Number of Successful Extensions: 899719985
Number of sequences better than 0.0: 0
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