BLASTX 7.6.2
Query= UN59685 /QuerySize=615
(614 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|4325354|gb|AAD17351.1| contains similarity to retrovirus-rela... 120 2e-025
gi|8778340|gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 119 4e-025
gi|310753569|gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sa... 110 2e-022
gi|147822421|emb|CAN68499.1| hypothetical protein VITISV_041099 ... 108 8e-022
gi|310753567|gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sa... 107 2e-021
gi|147765719|emb|CAN77900.1| hypothetical protein VITISV_037350 ... 105 7e-021
gi|147777577|emb|CAN73690.1| hypothetical protein VITISV_034834 ... 101 7e-020
gi|147865035|emb|CAN83237.1| hypothetical protein VITISV_029623 ... 98 8e-019
gi|310753565|gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 95 7e-018
gi|20197406|gb|AAM15062.1| putative retroelement integrase [Arab... 94 9e-018
gi|147766531|emb|CAN74156.1| hypothetical protein VITISV_011981 ... 94 9e-018
gi|56744298|gb|AAW28577.1| Putative gag-pol polyprotein, identic... 94 1e-017
gi|56744299|gb|AAW28578.1| Putative gag-pol polyprotein, identic... 94 1e-017
gi|22296822|gb|AAM94350.1| gag-pol polyprotein [Zea mays] 85 7e-015
gi|284434735|gb|ADB85432.1| putative retrotransposon protein [Ph... 83 2e-014
gi|34015213|gb|AAQ56407.1| putative gag-pol polyprotein [Oryza s... 82 6e-014
gi|4689454|gb|AAD27902.1|AC006267_7 putative polyprotein [Arabid... 80 2e-013
gi|38344456|emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japoni... 80 2e-013
gi|13992688|gb|AAK51582.1|AC022352_18 Putative retroelement [Ory... 80 2e-013
>gi|4325354|gb|AAD17351.1| contains similarity to retrovirus-related
polyproteins and to CCHC zinc finger protein (Pfam: PF00098,
Score=16.3, E=0.051, E= 1) [Arabidopsis thaliana]
Length = 1138
Score = 120 bits (299), Expect = 2e-025
Identities = 59/96 (61%), Positives = 73/96 (76%)
Frame = +2
Query: 155 VESSDLIYDEDDLDEPSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIID 334
VES D +E D++E G LLVT R LSV K+ ++ QREN FH+RCLI KVCSLIID
Sbjct: 307 VESEDEKPEESDVEEAPKGELLVTMRVLSVLNKAEEQAQRENLFHTRCLIKGKVCSLIID 366
Query: 335 GGSCTNVASDTLVKKLGLVTRPLSRPFRLEWLNESG 442
GGSCTNVAS+T+V+KLGL P +P++L+WLNESG
Sbjct: 367 GGSCTNVASETMVQKLGLEEFPHPKPYKLQWLNESG 402
>gi|8778340|gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 119 bits (296), Expect = 4e-025
Identities = 58/100 (58%), Positives = 76/100 (76%), Gaps = 4/100 (4%)
Frame = +2
Query: 155 VESSDLIYDE----DDLDEPSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCS 322
+ES D +E +D + PS G LLVT +ALSV K++++EQREN FHS C+++DKVCS
Sbjct: 687 IESEDEQLEESSSTEDYEAPSKGELLVTMKALSVIAKTDEQEQRENLFHSSCMVNDKVCS 746
Query: 323 LIIDGGSCTNVASDTLVKKLGLVTRPLSRPFRLEWLNESG 442
LIIDGGSCTNVAS+T+V+KLGL RP++L+WLNE G
Sbjct: 747 LIIDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLNEDG 786
>gi|310753569|gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 572
Score = 110 bits (273), Expect = 2e-022
Identities = 57/104 (54%), Positives = 68/104 (65%)
Frame = +2
Query: 128 MIDEFFSTFVESSDLIYDEDDLDEPSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLIS 307
M+ E VE D YDE+ +E G LL+ RR L Q K D QREN FH+RC +
Sbjct: 314 MLMEENEGIVEEEDGDYDEEFEEEIPSGDLLMVRRMLGSQIKEEDTGQRENLFHTRCFVQ 373
Query: 308 DKVCSLIIDGGSCTNVASDTLVKKLGLVTRPLSRPFRLEWLNES 439
KVCSLIIDGGSCTNVAS LV KL L T+P +P++L+WLNES
Sbjct: 374 GKVCSLIIDGGSCTNVASTRLVSKLKLETKPHPKPYKLQWLNES 417
>gi|147822421|emb|CAN68499.1| hypothetical protein VITISV_041099 [Vitis
vinifera]
Length = 1115
Score = 108 bits (268), Expect = 8e-022
Identities = 53/88 (60%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Frame = +2
Query: 182 EDDLDEPSHGSLLVTRRALSVQPKSNDKE-QRENHFHSRCLISDKVCSLIIDGGSCTNVA 358
+D+++ P G LV RRALS Q K +D E QREN FH+RC I++KVCS+IIDGGSCTNVA
Sbjct: 292 DDNVEYPXEGESLVARRALSAQVKEDDMEQQRENXFHTRCHINNKVCSMIIDGGSCTNVA 351
Query: 359 SDTLVKKLGLVTRPLSRPFRLEWLNESG 442
S TLV+KL L T RP++L WLN+ G
Sbjct: 352 STTLVEKLNLPTLKYPRPYKLXWLNDCG 379
>gi|310753567|gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 1004
Score = 107 bits (265), Expect = 2e-021
Identities = 55/104 (52%), Positives = 67/104 (64%)
Frame = +2
Query: 128 MIDEFFSTFVESSDLIYDEDDLDEPSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLIS 307
M+ E VE D YD++ +E G LL+ RR L Q K D QREN FH RC +
Sbjct: 314 MLMEENEEIVEEEDGDYDKEFGEEIPSGDLLMVRRMLGSQIKEEDTSQRENLFHIRCFVQ 373
Query: 308 DKVCSLIIDGGSCTNVASDTLVKKLGLVTRPLSRPFRLEWLNES 439
KVCSLIIDGGSCTNVAS LV +L L T+P +P++L+WLNES
Sbjct: 374 GKVCSLIIDGGSCTNVASTRLVSRLKLETKPHPKPYKLQWLNES 417
>gi|147765719|emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis
vinifera]
Length = 1173
Score = 105 bits (260), Expect = 7e-021
Identities = 52/88 (59%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Frame = +2
Query: 182 EDDLDEPSHGSLLVTRRALSVQPKSNDKE-QRENHFHSRCLISDKVCSLIIDGGSCTNVA 358
+D+++ P G LV RRALS Q K +D E QREN FH+RC I++KVCS+IIDGGSC NVA
Sbjct: 312 DDNVEYPVEGESLVARRALSAQVKKDDMEQQRENIFHTRCHINNKVCSMIIDGGSCANVA 371
Query: 359 SDTLVKKLGLVTRPLSRPFRLEWLNESG 442
S TLV+KL L T RP++L+WLN+ G
Sbjct: 372 STTLVEKLNLPTLKHPRPYKLQWLNDCG 399
>gi|147777577|emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis
vinifera]
Length = 818
Score = 101 bits (251), Expect = 7e-020
Identities = 50/88 (56%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Frame = +2
Query: 182 EDDLDEPSHGSLLVTRRALSVQPKSND-KEQRENHFHSRCLISDKVCSLIIDGGSCTNVA 358
+D+++ P G LV R ALS Q K +D ++QREN FH+RC I++KVCS+IIDGGSCTNVA
Sbjct: 381 DDNVEYPVEGESLVARCALSAQAKKDDLEQQRENIFHTRCHINNKVCSMIIDGGSCTNVA 440
Query: 359 SDTLVKKLGLVTRPLSRPFRLEWLNESG 442
S TLV+ L L T RP++L+WLN+ G
Sbjct: 441 STTLVENLNLPTLKHPRPYKLQWLNDFG 468
>gi|147865035|emb|CAN83237.1| hypothetical protein VITISV_029623 [Vitis
vinifera]
Length = 1124
Score = 98 bits (242), Expect = 8e-019
Identities = 50/88 (56%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = +2
Query: 182 EDDLDEPSHGSLLVTRRALSVQPKSNDKE-QRENHFHSRCLISDKVCSLIIDGGSCTNVA 358
+D+++ G LV R ALS Q K +D E QREN FH+RC I++KVCS+IID GSCTNVA
Sbjct: 309 DDNVEYLVEGESLVARHALSAQVKEDDMEQQRENIFHTRCHINNKVCSMIIDRGSCTNVA 368
Query: 359 SDTLVKKLGLVTRPLSRPFRLEWLNESG 442
S TLV+KL L T RP++L+WLN+ G
Sbjct: 369 STTLVEKLNLPTLKHPRPYKLQWLNDCG 396
>gi|310753565|gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 95 bits (234), Expect = 7e-018
Identities = 47/94 (50%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Frame = +2
Query: 155 VESSDLIYDEDDLDEPSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIID 334
VE +D ++EDD+ P G LVT R + QP+ + +QR+ F SRC I +VC+LIID
Sbjct: 348 VEGTD--HEEDDVVMPDAGLSLVTWRVMHTQPQPLEMDQRQQIFRSRCTIKGRVCNLIID 405
Query: 335 GGSCTNVASDTLVKKLGLVTRPLSRPFRLEWLNE 436
GGSCTNVAS TL++KL L T+ P++L WLN+
Sbjct: 406 GGSCTNVASSTLIEKLSLPTQDHPSPYKLRWLNK 439
>gi|20197406|gb|AAM15062.1| putative retroelement integrase [Arabidopsis
thaliana]
Length = 1215
Score = 94 bits (233), Expect = 9e-018
Identities = 44/63 (69%), Positives = 54/63 (85%)
Frame = +2
Query: 200 PSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIIDGGSCTNVASDTLVKK 379
P+ G LLV RR LSVQ K++++EQR+N FH+RC + KVCSLIIDGGSCTNVAS+T+VKK
Sbjct: 206 PAQGELLVARRTLSVQTKTDEQEQRKNLFHTRCHVHGKVCSLIIDGGSCTNVASETMVKK 265
Query: 380 LGL 388
LGL
Sbjct: 266 LGL 268
Score = 86 bits (212), Expect = 2e-015
Identities = 35/53 (66%), Positives = 46/53 (86%)
Frame = +1
Query: 454 EEQVTVPLSIGRYEDEVVCNVLPMDACHVLLGWPWQFDKKTVHDGFTNRHSFD 612
+ QV VP+ IG+YEDE++C+VLPM+A H+LLG PWQ D+K +HDGFTNRHSF+
Sbjct: 280 KNQVVVPIVIGKYEDEILCDVLPMEAGHILLGRPWQSDRKVMHDGFTNRHSFE 332
>gi|147766531|emb|CAN74156.1| hypothetical protein VITISV_011981 [Vitis
vinifera]
Length = 375
Score = 94 bits (233), Expect = 9e-018
Identities = 46/78 (58%), Positives = 58/78 (74%)
Frame = +2
Query: 209 GSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIIDGGSCTNVASDTLVKKLGL 388
G LLV RRALS+Q K DK QREN FH+R + +K+CS+I D GSCTN+AS T+V+KLGL
Sbjct: 265 GELLVARRALSMQVKEYDKVQRENIFHTRYHVQNKICSVITDRGSCTNIASITMVEKLGL 324
Query: 389 VTRPLSRPFRLEWLNESG 442
T RP + +WLN+SG
Sbjct: 325 PTIKHPRPSKFQWLNDSG 342
>gi|56744298|gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum
demissum]
Length = 1588
Score = 94 bits (232), Expect = 1e-017
Identities = 46/95 (48%), Positives = 62/95 (65%)
Frame = +2
Query: 158 ESSDLIYDEDDLDEPSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIIDG 337
E + + +EDDL+ P+ G + V RR +++ S D+ QREN FH+RC I K S+IIDG
Sbjct: 381 EEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSVDEGQRENLFHTRCGIKGKTYSMIIDG 440
Query: 338 GSCTNVASDTLVKKLGLVTRPLSRPFRLEWLNESG 442
GSC NV S LV KLG+ S P+RL+WLN+ G
Sbjct: 441 GSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCG 475
>gi|56744299|gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum
demissum]
Length = 1588
Score = 94 bits (232), Expect = 1e-017
Identities = 46/95 (48%), Positives = 62/95 (65%)
Frame = +2
Query: 158 ESSDLIYDEDDLDEPSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIIDG 337
E + + +EDDL+ P+ G + V RR +++ S D+ QREN FH+RC I K S+IIDG
Sbjct: 381 EEGEGVSEEDDLELPNDGIIGVVRRIMTINLGSVDEGQRENLFHTRCGIKGKTYSMIIDG 440
Query: 338 GSCTNVASDTLVKKLGLVTRPLSRPFRLEWLNESG 442
GSC NV S LV KLG+ S P+RL+WLN+ G
Sbjct: 441 GSCANVVSSYLVDKLGIACMKRSTPYRLQWLNDCG 475
>gi|22296822|gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 85 bits (208), Expect = 7e-015
Identities = 36/83 (43%), Positives = 54/83 (65%)
Frame = +2
Query: 194 DEPSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIIDGGSCTNVASDTLV 373
D+ H L+ +R LS Q + ++ QR F ++C+I ++ C LIIDGGSC N+AS +V
Sbjct: 453 DDAEHYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRLIIDGGSCNNLASSDMV 512
Query: 374 KKLGLVTRPLSRPFRLEWLNESG 442
+KL L T+P P+ ++WLN SG
Sbjct: 513 EKLALTTKPHPHPYHIQWLNNSG 535
>gi|284434735|gb|ADB85432.1| putative retrotransposon protein [Phyllostachys
edulis]
Length = 870
Score = 83 bits (204), Expect = 2e-014
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 8/95 (8%)
Frame = +2
Query: 179 DEDDLDEP-------SHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIIDG 337
D DD++E +H S LV +R LS Q + ++ QR N F +R L+ D+ C +IIDG
Sbjct: 425 DADDVEEQVAAVDTGNHMS-LVAQRVLSAQVERAEQNQRHNLFQTRFLVKDRACRVIIDG 483
Query: 338 GSCTNVASDTLVKKLGLVTRPLSRPFRLEWLNESG 442
GSC N+AS +VKK GL T+P RP+ ++W N G
Sbjct: 484 GSCNNLASSEMVKKFGLATQPHPRPYYIQWFNSCG 518
>gi|34015213|gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica
Group]
Length = 1619
Score = 82 bits (200), Expect = 6e-014
Identities = 38/97 (39%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Frame = +2
Query: 179 DEDDL--DEPSHGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIIDGGSCTN 352
DE+ + + H LV +R LS Q + ++ QR F ++C+I ++ C +IIDGGSC N
Sbjct: 436 DEEHIKAEAAEHYESLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNN 495
Query: 353 VASDTLVKKLGLVTRPLSRPFRLEWLNESG*QYAKSK 463
+AS +V+KL L T+P +P+ ++WLN SG ++ +S+
Sbjct: 496 LASAEMVEKLALSTQPHPQPYYIQWLNSSGKEHTRSE 532
>gi|4689454|gb|AAD27902.1|AC006267_7 putative polyprotein [Arabidopsis
thaliana]
Length = 1054
Score = 80 bits (196), Expect = 2e-013
Identities = 33/53 (62%), Positives = 44/53 (83%)
Frame = +1
Query: 454 EEQVTVPLSIGRYEDEVVCNVLPMDACHVLLGWPWQFDKKTVHDGFTNRHSFD 612
+EQV VPLSIG+Y DE++C++L MDA H+LLG PWQ D+K + DGFTNR +F+
Sbjct: 417 KEQVKVPLSIGKYHDEIMCDILHMDASHILLGRPWQSDRKVLQDGFTNRQTFE 469
>gi|38344456|emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group]
Length = 1134
Score = 80 bits (195), Expect = 2e-013
Identities = 33/79 (41%), Positives = 52/79 (65%)
Frame = +2
Query: 206 HGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIIDGGSCTNVASDTLVKKLG 385
H L+ +R LS Q + ++ QR F ++C++ ++ C +IIDGGSC N+AS +V+KL
Sbjct: 637 HYESLIVQRVLSTQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLA 696
Query: 386 LVTRPLSRPFRLEWLNESG 442
L T+P P+ ++WLN SG
Sbjct: 697 LSTKPHPHPYYIQWLNNSG 715
>gi|13992688|gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa
Japonica Group]
Length = 2447
Score = 80 bits (195), Expect = 2e-013
Identities = 33/79 (41%), Positives = 52/79 (65%)
Frame = +2
Query: 206 HGSLLVTRRALSVQPKSNDKEQRENHFHSRCLISDKVCSLIIDGGSCTNVASDTLVKKLG 385
H L+ +R LS Q + ++ QR F ++C++ ++ C +IIDGGSC N+AS +V+KL
Sbjct: 454 HYESLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLA 513
Query: 386 LVTRPLSRPFRLEWLNESG 442
L T+P P+ ++WLN SG
Sbjct: 514 LSTKPHPHPYYIQWLNNSG 532
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,079,122,805,816
Number of Sequences: 15229318
Number of Extensions: 6079122805816
Number of Successful Extensions: 1432667303
Number of sequences better than 0.0: 0
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