BLASTX 7.6.2
Query= UN60375 /QuerySize=569
(568 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15222208|ref|NP_172778.1| RNA recognition motif-containing pr... 161 8e-038
gi|297844222|ref|XP_002889992.1| RNA recognition motif-containin... 161 8e-038
gi|225461910|ref|XP_002265353.1| PREDICTED: similar to RNA recog... 70 1e-010
gi|255563498|ref|XP_002522751.1| RNA-binding protein, putative [... 65 6e-009
gi|296089912|emb|CBI39731.3| unnamed protein product [Vitis vini... 64 1e-008
gi|218186084|gb|EEC68511.1| hypothetical protein OsI_36782 [Oryz... 56 3e-006
gi|115486373|ref|NP_001068330.1| Os11g0636900 [Oryza sativa Japo... 55 4e-006
gi|108864608|gb|ABG22562.1| U2 snRNP auxilliary factor, large su... 55 4e-006
gi|115476996|ref|NP_001062094.1| Os08g0486200 [Oryza sativa Japo... 55 5e-006
gi|218201347|gb|EEC83774.1| hypothetical protein OsI_29668 [Oryz... 55 5e-006
>gi|15222208|ref|NP_172778.1| RNA recognition motif-containing protein
[Arabidopsis thaliana]
Length = 573
Score = 161 bits (405), Expect = 8e-038
Identities = 83/95 (87%), Positives = 87/95 (91%), Gaps = 5/95 (5%)
Frame = +1
Query: 1 EDENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHREEKDSHREY---RHRDSEEYD 171
EDE QEKEEK PSR+KERATTERDWSE+S GDRRHKSHREEKDSHREY R RDS+E+D
Sbjct: 481 EDETQEKEEK-PSRDKERATTERDWSENS-GDRRHKSHREEKDSHREYKQQRDRDSDEFD 538
Query: 172 RGQSSSKSRSRSRMSEDDHRSRSRDADYGKRRRGD 276
RGQSS KSRSRSRMSEDDHRSRSRDADYGKRRRGD
Sbjct: 539 RGQSSLKSRSRSRMSEDDHRSRSRDADYGKRRRGD 573
>gi|297844222|ref|XP_002889992.1| RNA recognition motif-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 573
Score = 161 bits (405), Expect = 8e-038
Identities = 83/95 (87%), Positives = 87/95 (91%), Gaps = 5/95 (5%)
Frame = +1
Query: 1 EDENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHREEKDSHREY---RHRDSEEYD 171
EDE QEKEEK PSR+KERATTERDWSE+S GDRRHKSHREEKDSHREY R RDS+E+D
Sbjct: 481 EDETQEKEEK-PSRDKERATTERDWSENS-GDRRHKSHREEKDSHREYKQQRDRDSDEFD 538
Query: 172 RGQSSSKSRSRSRMSEDDHRSRSRDADYGKRRRGD 276
RGQSS KSRSRSRMSEDDHRSRSRDADYGKRRRGD
Sbjct: 539 RGQSSVKSRSRSRMSEDDHRSRSRDADYGKRRRGD 573
>gi|225461910|ref|XP_002265353.1| PREDICTED: similar to RNA recognition motif
(RRM)-containing protein [Vitis vinifera]
Length = 506
Score = 70 bits (170), Expect = 1e-010
Identities = 42/89 (47%), Positives = 61/89 (68%), Gaps = 9/89 (10%)
Frame = +1
Query: 25 EKQPSREKERATTERDWSESSGGDRRHKSHREEKD---SHREYRHRDSE---EYDRGQSS 186
E++ SR++ER +R+ DR + +RE++D H YR R+SE E+DRG+ S
Sbjct: 416 ERERSRDRER-DRDRERDRDRDRDRDRERYREDRDRYADHHRYRDRESEHDDEWDRGR-S 473
Query: 187 SKSRSRSRMS-EDDHRSRSRDADYGKRRR 270
S++ S+SR+S E++ RSRSRDADYGKRRR
Sbjct: 474 SRTHSKSRLSQEEEQRSRSRDADYGKRRR 502
>gi|255563498|ref|XP_002522751.1| RNA-binding protein, putative [Ricinus
communis]
Length = 702
Score = 65 bits (156), Expect = 6e-009
Identities = 40/96 (41%), Positives = 65/96 (67%), Gaps = 14/96 (14%)
Frame = +1
Query: 1 EDENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHREEKDSHRE-YRHRDSE----- 162
E + + + +++ SR++ER ERD DR H +RE++D + + +R+RD E
Sbjct: 611 ERDRERERDRERSRDRER-ERERDRDR----DRDHDRYREDRDRYADNHRYRDREVEHDD 665
Query: 163 EYDRGQSSSKSRSRSRMSEDDHRSRSRDADYGKRRR 270
++DRG+ SS++ ++SR+S++ RSRSRDADYGKRRR
Sbjct: 666 DWDRGR-SSRTHTKSRLSQE--RSRSRDADYGKRRR 698
>gi|296089912|emb|CBI39731.3| unnamed protein product [Vitis vinifera]
Length = 597
Score = 64 bits (154), Expect = 1e-008
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 12/92 (13%)
Frame = +1
Query: 7 ENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHREEKDSHREYRHRDSE---EYDRG 177
EN E K RE +RD R + HR+ H YR R+SE E+DRG
Sbjct: 510 ENDWPERKH--REDRDIGRDRDRERD-----REREHRDRYADHHRYRDRESEHDDEWDRG 562
Query: 178 QSSSKSRSRSRMS-EDDHRSRSRDADYGKRRR 270
+ SS++ S+SR+S E++ RSRSRDADYGKRRR
Sbjct: 563 R-SSRTHSKSRLSQEEEQRSRSRDADYGKRRR 593
>gi|218186084|gb|EEC68511.1| hypothetical protein OsI_36782 [Oryza sativa Indica
Group]
Length = 574
Score = 56 bits (133), Expect = 3e-006
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +1
Query: 7 ENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHRE--EKDSHREYRHRDSEEYDRGQ 180
E + ++K+ R++ R +RD + RH+ HR+ E+ HR+ D + RG
Sbjct: 72 ERERDKDKERDRDRGRDRRDRDRGDKDRDRDRHREHRDRSERREHRDRERSDDRDRRRGH 131
Query: 181 SSSKSRSRSRMSEDDHRSRSRDADYGKRRR 270
S + R R R HRSRSR G+ RR
Sbjct: 132 DSERRRDRDRDGHRRHRSRSRSPSKGRDRR 161
>gi|115486373|ref|NP_001068330.1| Os11g0636900 [Oryza sativa Japonica Group]
Length = 574
Score = 55 bits (132), Expect = 4e-006
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +1
Query: 7 ENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHRE--EKDSHREYRHRDSEEYDRGQ 180
E + ++K+ R+++R +RD + RH+ HR+ E+ H + D + RG
Sbjct: 72 ERERDKDKERDRDRDRDRRDRDRGDKDRDRDRHREHRDRSERREHHDRERSDDRDRRRGH 131
Query: 181 SSSKSRSRSRMSEDDHRSRSRDADYGKRRR 270
S + R R R HRSRSR G+ RR
Sbjct: 132 DSERRRDRDRDGHRRHRSRSRSPSKGRDRR 161
>gi|108864608|gb|ABG22562.1| U2 snRNP auxilliary factor, large subunit, splicing
factor family protein, expressed [Oryza sativa Japonica Group]
Length = 550
Score = 55 bits (132), Expect = 4e-006
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +1
Query: 7 ENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHRE--EKDSHREYRHRDSEEYDRGQ 180
E + ++K+ R+++R +RD + RH+ HR+ E+ H + D + RG
Sbjct: 72 ERERDKDKERDRDRDRDRRDRDRGDKDRDRDRHREHRDRSERREHHDRERSDDRDRRRGH 131
Query: 181 SSSKSRSRSRMSEDDHRSRSRDADYGKRRR 270
S + R R R HRSRSR G+ RR
Sbjct: 132 DSERRRDRDRDGHRRHRSRSRSPSKGRDRR 161
>gi|115476996|ref|NP_001062094.1| Os08g0486200 [Oryza sativa Japonica Group]
Length = 289
Score = 55 bits (131), Expect = 5e-006
Identities = 29/84 (34%), Positives = 43/84 (51%)
Frame = +1
Query: 16 EKEEKQPSREKERATTERDWSESSGGDRRHKSHREEKDSHREYRHRDSEEYDRGQSSSKS 195
E+ EK R + R+ R + +RR +S ++ H R RD + R +S S+S
Sbjct: 108 EEVEKSRDRSRSRSPRRRHRDDHRDRERRGRSRSRSRERHGRDRDRDHRRHSRSRSRSRS 167
Query: 196 RSRSRMSEDDHRSRSRDADYGKRR 267
RSRSR D+++R R D KRR
Sbjct: 168 RSRSRSLSPDYKNRRRGRDDDKRR 191
>gi|218201347|gb|EEC83774.1| hypothetical protein OsI_29668 [Oryza sativa Indica
Group]
Length = 298
Score = 55 bits (131), Expect = 5e-006
Identities = 29/84 (34%), Positives = 43/84 (51%)
Frame = +1
Query: 16 EKEEKQPSREKERATTERDWSESSGGDRRHKSHREEKDSHREYRHRDSEEYDRGQSSSKS 195
E+ EK R + R+ R + +RR +S ++ H R RD + R +S S+S
Sbjct: 108 EEVEKSRDRSRSRSPRRRHRDDHRDRERRGRSRSRSRERHGRDRDRDHRRHSRSRSRSRS 167
Query: 196 RSRSRMSEDDHRSRSRDADYGKRR 267
RSRSR D+++R R D KRR
Sbjct: 168 RSRSRSLSPDYKNRRRGRDDDKRR 191
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,093,402,909,170
Number of Sequences: 15229318
Number of Extensions: 6093402909170
Number of Successful Extensions: 1441314211
Number of sequences better than 0.0: 0
|
