BLASTX 7.6.2

Query= UN60375 /QuerySize=569
        (568 letters)

Database: UniProt/SwissProt;
          518,415 sequences; 182,829,261 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapie...     57   5e-008
sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Or...     55   2e-007
sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum ...     55   3e-007
sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio reri...     50   8e-006

>sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B
        PE=1 SV=1

          Length = 546

 Score =  57 bits (137), Expect = 5e-008
 Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
 Frame = +1

Query:  22 EEKQPSREKER-ATTERDWSESSGGDRRHKSHREEKDSHREYRHRDSEEYDRGQSSSKSR 198
           +E+   REKER  + ER   + S G+   K H+E+KD   + RHRD +   R     K  
Sbjct: 372 KERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKD---DRRHRDDK---RDSKKEKKH 425

Query: 199 SRSRMSEDDHRSRSRDADYGKRRR 270
           SRSR  E  HRSRSR  + GKR R
Sbjct: 426 SRSRSRERKHRSRSRSRNAGKRSR 449

>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa
        subsp. japonica GN=U2AF65A PE=2 SV=2

          Length = 574

 Score =  55 bits (132), Expect = 2e-007
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +1

Query:   7 ENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHRE--EKDSHREYRHRDSEEYDRGQ 180
           E +  ++K+  R+++R   +RD  +      RH+ HR+  E+  H +    D  +  RG 
Sbjct:  72 ERERDKDKERDRDRDRDRRDRDRGDKDRDRDRHREHRDRSERREHHDRERSDDRDRRRGH 131

Query: 181 SSSKSRSRSRMSEDDHRSRSRDADYGKRRR 270
            S + R R R     HRSRSR    G+ RR
Sbjct: 132 DSERRRDRDRDGHRRHRSRSRSPSKGRDRR 161

>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus
        musculus GN=Cherp PE=1 SV=1

          Length = 936

 Score =  55 bits (131), Expect = 3e-007
 Identities = 38/90 (42%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
 Frame = +1

Query:   7 ENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHREEKDSHREYRHRDSEEYDRGQSS 186
           + QEK    PSR + R+ + R  S S    R  KS R    SH   R R S    R +S 
Sbjct: 736 KGQEKRNSGPSRSRSRSKS-RGRSSSRSSSRSSKSSRSSSRSHSRSRSRSS---SRSRSR 791

Query: 187 SKSRSRSRMSEDDHRSRSRDADY--GKRRR 270
           S+SRSRS  S    RSRSR   Y  G+RRR
Sbjct: 792 SRSRSRSSRSRSRSRSRSRSKSYSPGRRRR 821

>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b
        PE=2 SV=1

          Length = 501

 Score =  50 bits (118), Expect = 8e-006
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +1

Query:   1 EDENQEKEEKQPSREKERATTERDWSESSGGDRRHKSHREEKDSHREYRHRDSEEYDRGQ 180
           E E   K++++  +++ER+  +R  S+  G +RRHK  +EEK    E R + S    R +
Sbjct: 362 ERERSRKKDREHHKDRERSKDKR--SKGEGEERRHKDDKEEKKHREEKRSKRSRSRSRDR 419

Query: 181 SSSKSRSRSRMSEDDHRSRSRDADYGKRRR 270
                RS  + S    RSR    +   R+R
Sbjct: 420 KHKAERSSKKRSRSGSRSRQEAGEEKNRKR 449

  Database: UniProt/SwissProt
    Posted date:  Sat Aug 07 14:36:18 2010
  Number of letters in database: 182,829,261
  Number of sequences in database:  518,415

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,499,373,720
Number of Sequences: 518415
Number of Extensions: 211499373720
Number of Successful Extensions: 1295646188
Number of sequences better than 0.0: 0