BLASTX 7.6.2
Query= UN60899 /QuerySize=685
(684 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=D... 122 3e-027
sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bo... 79 3e-014
sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Ho... 79 3e-014
sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mu... 79 3e-014
sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus ... 79 3e-014
sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xe... 78 4e-014
sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Dr... 76 2e-013
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=M... 74 8e-013
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=H... 74 1e-012
sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 O... 73 1e-012
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium
discoideum GN=snrpb2 PE=3 SV=1
Length = 241
Score = 122 bits (304), Expect = 3e-027
Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 7/178 (3%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREK-RKRHEEKGGKKKKEQHH 507
ASNA+ +MNGF F D+PM+IQ+ K+KSD ++K DGT++ +++ R+ +++KG KK+++
Sbjct: 67 ASNALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKREREENDKKGSNKKQDRKS 126
Query: 506 DNTRMPIPPYPGVYGSAPPLSQVPYPGGGGGGVKSNLPEAPAPPNNILFVQHLPHDTTPE 327
+ PG S + P G V +L PPN LFV++LP
Sbjct: 127 TGQQQQQQKRPGAPTST---TSTTSPTTSNGTV--SLQPRDDPPNKTLFVENLPDKCDSM 181
Query: 326 RLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGLEGFTI-HQTPMHITYA 156
L LF + GFKEV MV +K GIAF+EF DE++S AM L+ F + + PM +++A
Sbjct: 182 MLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMVVSFA 239
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus
GN=SNRPA PE=2 SV=1
Length = 282
Score = 79 bits (192), Expect = 3e-014
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 19/134 (14%)
Frame = -2
Query: 512 HHDNTRMPIPPYPGVY------------GSAPPLSQVPYPGGGGGGVKSNLPEAPAPPNN 369
HH + P P PG+ G+ PP +P G + P + PPN+
Sbjct: 155 HHMPGQPPYMPPPGMIPPPGLAPGQLPPGAMPPQQLMP------GQMPPAQPLSENPPNH 208
Query: 368 ILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGLEGFT 189
ILF+ +LP +T L LF + GFKEVR+V + IAFVEF +E+Q+ AA L+GF
Sbjct: 209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFK 268
Query: 188 IHQ-TPMHITYAKK 150
I Q M I++AKK
Sbjct: 269 ITQNNAMKISFAKK 282
Score = 73 bits (178), Expect = 1e-012
Identities = 40/87 (45%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFV----PREKRKRHEEKGGKKKKE 516
A+NA+ M GFPFYDKPMRIQ+AKT SD+IAK GTFV REKRK ++ KK
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKA 124
Query: 515 QHHDNTRMPIPPYPGVYGSAPPLSQVP 435
+ G PP++Q P
Sbjct: 125 VQGGAAAPVVGTVQGPVPGMPPMTQAP 151
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens
GN=SNRPA PE=1 SV=3
Length = 282
Score = 79 bits (192), Expect = 3e-014
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 19/134 (14%)
Frame = -2
Query: 512 HHDNTRMPIPPYPGVY------------GSAPPLSQVPYPGGGGGGVKSNLPEAPAPPNN 369
HH + P P PG+ G+ PP +P G + P + PPN+
Sbjct: 155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP------GQMPPAQPLSENPPNH 208
Query: 368 ILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGLEGFT 189
ILF+ +LP +T L LF + GFKEVR+V + IAFVEF +E+Q+ AA L+GF
Sbjct: 209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFK 268
Query: 188 IHQ-TPMHITYAKK 150
I Q M I++AKK
Sbjct: 269 ITQNNAMKISFAKK 282
Score = 74 bits (180), Expect = 8e-013
Identities = 40/87 (45%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFV----PREKRKRHEEKGGKKKKE 516
A+NA+ M GFPFYDKPMRIQ+AKT SD+IAK GTFV REKRK ++ KK
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
Query: 515 QHHDNTRMPIPPYPGVYGSAPPLSQVP 435
+ G PP++Q P
Sbjct: 125 VQGGGATPVVGAVQGPVPGMPPMTQAP 151
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus
GN=Snrpa PE=2 SV=3
Length = 287
Score = 79 bits (192), Expect = 3e-014
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 19/134 (14%)
Frame = -2
Query: 512 HHDNTRMPIPPYPGVY------------GSAPPLSQVPYPGGGGGGVKSNLPEAPAPPNN 369
HH + P P PG+ G+ PP +P G + P + PPN+
Sbjct: 160 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP------GQMPPAQPLSENPPNH 213
Query: 368 ILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGLEGFT 189
ILF+ +LP +T L LF + GFKEVR+V + IAFVEF +E+Q+ AA L+GF
Sbjct: 214 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFK 273
Query: 188 IHQ-TPMHITYAKK 150
I Q M I++AKK
Sbjct: 274 ITQNNAMKISFAKK 287
Score = 71 bits (172), Expect = 7e-012
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 11/90 (12%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFV----PREKRK-RHEEKGGKKKK 519
A+NA+ M GFPFYDKPMRIQ+AKT SD+IAK GT+V REKRK + +E KK
Sbjct: 71 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKA 130
Query: 518 EQHHDNTRM--PIPPYPGVYGSAPPLSQVP 435
Q + + P PG+ PP+ Q P
Sbjct: 131 VQGGAAAPVVGAVQPVPGM----PPMPQAP 156
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA
PE=2 SV=1
Length = 282
Score = 79 bits (192), Expect = 3e-014
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 19/134 (14%)
Frame = -2
Query: 512 HHDNTRMPIPPYPGVY------------GSAPPLSQVPYPGGGGGGVKSNLPEAPAPPNN 369
HH + P P PG+ G+ PP +P G + P + PPN+
Sbjct: 155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP------GQMPPAQPLSENPPNH 208
Query: 368 ILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGLEGFT 189
ILF+ +LP +T L LF + GFKEVR+V + IAFVEF +E+Q+ AA L+GF
Sbjct: 209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFK 268
Query: 188 IHQ-TPMHITYAKK 150
I Q M I++AKK
Sbjct: 269 ITQNNAMKISFAKK 282
Score = 74 bits (179), Expect = 1e-012
Identities = 40/87 (45%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFV----PREKRKRHEEKGGKKKKE 516
A+NA+ M GFPFYDKPMRIQ+AKT SD+IAK GTFV REKRK ++ KK
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPASKKA 124
Query: 515 QHHDNTRMPIPPYPGVYGSAPPLSQVP 435
+ G PP++Q P
Sbjct: 125 VQGGAAAPVVGAVQGPVPGMPPMTQTP 151
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis
GN=snrpa PE=2 SV=1
Length = 282
Score = 78 bits (191), Expect = 4e-014
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Frame = -2
Query: 482 PYPGVYGSAPPLSQVPYPGGGGGGVKSNLPEAPAPPNNILFVQHLPHDTTPERLQELFGN 303
P PG+ P +P+ G + P + PPN+ILF+ +LP +T L LF
Sbjct: 171 PPPGMAPGQMPPGGMPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQ 230
Query: 302 YHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGLEGFTIHQT-PMHITYAKK 150
+ GFKEVR+V + IAFVEF +E+Q+ AA L+GF I Q+ M I++AKK
Sbjct: 231 FPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
Score = 75 bits (182), Expect = 5e-013
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHD 504
A+NA+ M GFPFYDKPMRIQ++KT SD+IAK GTFV R+ RKR E++ K + Q
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERD-RKRQEKRKVKVPEVQGVK 123
Query: 503 NTRMPIPPYPGVYGSAPPLSQVP 435
N PGV G + +P
Sbjct: 124 NAMPGAALLPGVPGQMAAMQDMP 146
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila
melanogaster GN=snf PE=1 SV=1
Length = 216
Score = 76 bits (186), Expect = 2e-013
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = -2
Query: 380 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 201
PPN ILF+ +LP +T L LF + GFKEVR+V + IAFVEF E+QS AA L
Sbjct: 139 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEAL 198
Query: 200 EGFTIHQT-PMHITYAKK 150
+GF I T M IT+AKK
Sbjct: 199 QGFKITPTHAMKITFAKK 216
Score = 64 bits (153), Expect = 1e-009
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKR-------HEEKGGKK 525
ASNA+ M GFPFYDKPM+I ++K+ SD++AK GTF R K+ + +EK KK
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKK 121
Query: 524 KKEQHHDNT 498
KK +N+
Sbjct: 122 KKPSSAENS 130
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus
GN=Snrpb2 PE=2 SV=1
Length = 225
Score = 74 bits (180), Expect = 8e-013
Identities = 44/92 (47%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Frame = -2
Query: 413 GVKSNLPEAP-APPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFA 237
G + P+ P PPN ILF+ +LP +T L LF + GFKEVR+V + IAFVEF
Sbjct: 136 GTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 195
Query: 236 DEMQSTAAMHGLEGFTIHQTPMH---ITYAKK 150
++ Q+ AA L+GF I TP H ITYAKK
Sbjct: 196 NDGQAGAARDALQGFKI--TPSHAMKITYAKK 225
Score = 69 bits (167), Expect = 3e-011
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHD 504
++NA+ ++ GFPFY KPMRIQ+AKT SD+I+K GTF +EK+K E+K K ++
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTMEQAAAA 119
Query: 503 NTRMP---IPPYPGVYGSAPPLSQVP-YP 429
+ P P G+A P QVP YP
Sbjct: 120 ANKKPGQGTPNAANTQGTAAPNPQVPDYP 148
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens
GN=SNRPB2 PE=1 SV=1
Length = 225
Score = 74 bits (179), Expect = 1e-012
Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Frame = -2
Query: 395 PEAP-APPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQST 219
P+ P PPN ILF+ +LP +T L LF + GFKEVR+V + IAFVEF ++ Q+
Sbjct: 142 PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAG 201
Query: 218 AAMHGLEGFTIHQTPMH---ITYAKK 150
AA L+GF I TP H ITYAKK
Sbjct: 202 AARDALQGFKI--TPSHAMKITYAKK 225
Score = 69 bits (166), Expect = 3e-011
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHD 504
++NA+ ++ GFPFY KPMRIQ+AKT SD+I+K GTF +EK+K E+K K ++
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTVEQTATT 119
Query: 503 NTRMP---IPPYPGVYGSAPPLSQVP-YP 429
+ P P G++ P QVP YP
Sbjct: 120 TNKKPGQGTPNSANTQGNSTPNPQVPDYP 148
>sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102
OS=Schizosaccharomyces pombe GN=usp102 PE=1 SV=1
Length = 249
Score = 73 bits (178), Expect = 1e-012
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Frame = -2
Query: 560 KRKRHEEKGGKKKKEQHHDNTRMPIPPYPGVYGSAP-PLSQVPYPGGG-GGGVKSNLPEA 387
+R+ EE +KK + N R + + +AP P + P P G KS + E
Sbjct: 112 QRESPEEIETRKKDRK---NRREMLKRTSALQPAAPKPTHKKPVPKRNVGAERKSTINED 168
Query: 386 PAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMH 207
PPN +L +Q++P + + L ++F + GF+EVRMV + GIAFVE+ + ++T A +
Sbjct: 169 LLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKN 228
Query: 206 GLEGFTIHQTPMHITYAKK 150
G G ++ + +T+A+K
Sbjct: 229 GTTGMSLSGNQIKVTFARK 247
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,551,580,446
Number of Sequences: 518415
Number of Extensions: 212551580446
Number of Successful Extensions: 1307607611
Number of sequences better than 0.0: 0
|
