BLASTX 7.6.2
Query= UN60899 /QuerySize=685
(684 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PR... 278 3e-075
TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nu... 164 5e-041
TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucle... 92 2e-019
TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucle... 92 2e-019
TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucle... 92 2e-019
>TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA
binding / nucleic acid binding / nucleotide binding |
chr2:19517229-19518686 FORWARD
Length = 251
Score = 278 bits (710), Expect = 3e-075
Identities = 140/183 (76%), Positives = 154/183 (84%), Gaps = 8/183 (4%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEK-GGKKKKEQHH 507
AS AI+KMN FPFYDK MRIQ+AKTKSDV+AKADGTFVPREKRKRHEEK GGKKKK+QHH
Sbjct: 73 ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132
Query: 506 DNTRMPIP---PYPGVYGSAPPLSQVPYPGGGGGGVKSNLPEAPAPPNNILFVQHLPHDT 336
D+T+M +P YPGVYG+APPLSQVPYP GG+K N+PEAPAPPNNILFVQ+LPH+T
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYP----GGMKPNMPEAPAPPNNILFVQNLPHET 188
Query: 335 TPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGLEGFTIHQTPMHITYA 156
TP LQ LF Y GFKEVRM+ AKPGIAFVEFADEMQST AM GL+GF I Q M ITYA
Sbjct: 189 TPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQQNQMLITYA 248
Query: 155 KK* 147
KK*
Sbjct: 249 KK* 251
>TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nuclear
ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide
binding | chr2:12905557-12907434 REVERSE
Length = 233
Score = 164 bits (414), Expect = 5e-041
Identities = 87/181 (48%), Positives = 119/181 (65%), Gaps = 14/181 (7%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHD 504
A +A+ +M FPFYDKPMR+Q+AK KSD +AKA+GTFVP++K+++ EEK +K+++
Sbjct: 65 AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRP 124
Query: 503 NTRMPIPPYPGVYGSAPPLSQ-VPYPGGGGGGVKSNLPEAPAPPNNILFVQHLPHDTTPE 327
NT G + P + VP P G + PPNNILF+Q+LPH+TT
Sbjct: 125 NTA------NGPSANGPSANNGVPAPSFQPSG------QETMPPNNILFIQNLPHETTSM 172
Query: 326 RLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGLEGFTI-HQTPMHITYAKK 150
LQ LF Y GFKE+RM+ AKPGIAFVE+ D++Q++ AM L+GF I Q PM I++AKK
Sbjct: 173 MLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
Query: 149 * 147
*
Sbjct: 233 * 233
>TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 230
Score = 92 bits (228), Expect = 2e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = -2
Query: 380 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 201
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 211
Query: 200 EGFTI-HQTPMHITYAKK* 147
+GF I Q PM +++AKK*
Sbjct: 212 QGFKITPQNPMVVSFAKK* 230
Score = 81 bits (198), Expect = 6e-016
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 3/68 (4%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHD 504
ASNA+ +M FPFYDKPMRIQ+AK+KSD + KA+G+FVP+EK+ + EEK +K+ H +
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAE 121
Query: 503 NTRMPIPP 480
T+ P P
Sbjct: 122 ETQQPSMP 129
>TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 229
Score = 92 bits (228), Expect = 2e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = -2
Query: 380 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 201
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 151 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 210
Query: 200 EGFTI-HQTPMHITYAKK* 147
+GF I Q PM +++AKK*
Sbjct: 211 QGFKITPQNPMVVSFAKK* 229
Score = 81 bits (198), Expect = 6e-016
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 3/68 (4%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHD 504
ASNA+ +M FPFYDKPMRIQ+AK+KSD + KA+G+FVP+EK+ + EEK +K+ H +
Sbjct: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAE 121
Query: 503 NTRMPIPP 480
T+ P P
Sbjct: 122 ETQQPSMP 129
>TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135982-2137533
FORWARD
Length = 201
Score = 92 bits (228), Expect = 2e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = -2
Query: 380 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 201
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 123 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 182
Query: 200 EGFTI-HQTPMHITYAKK* 147
+GF I Q PM +++AKK*
Sbjct: 183 QGFKITPQNPMVVSFAKK* 201
Score = 81 bits (198), Expect = 6e-016
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 3/68 (4%)
Frame = -2
Query: 683 ASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHD 504
ASNA+ +M FPFYDKPMRIQ+AK+KSD + KA+G+FVP+EK+ + EEK +K+ H +
Sbjct: 36 ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAE 92
Query: 503 NTRMPIPP 480
T+ P P
Sbjct: 93 ETQQPSMP 100
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,711,607,754
Number of Sequences: 33410
Number of Extensions: 27711607754
Number of Successful Extensions: 910681819
Number of sequences better than 0.0: 0
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