BLASTX 7.6.2
Query= UN61215 /QuerySize=777
(776 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G03110.1 | Symbols: | RNA-binding protein, pu... 340 7e-094
TAIR9_protein||AT4G03110.2 | Symbols: | RNA-binding protein, pu... 340 7e-094
TAIR9_protein||AT1G03457.1 | Symbols: | RNA-binding protein, pu... 292 2e-079
TAIR9_protein||AT4G16280.2 | Symbols: FCA | FCA; RNA binding | c... 153 1e-037
TAIR9_protein||AT4G16280.3 | Symbols: FCA | FCA; RNA binding | c... 153 1e-037
TAIR9_protein||AT1G03457.2 | Symbols: | RNA-binding protein, pu... 149 2e-036
TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2... 50 1e-006
>TAIR9_protein||AT4G03110.1 | Symbols: | RNA-binding protein, putative |
chr4:1376612-1379275 REVERSE
Length = 442
Score = 340 bits (871), Expect = 7e-094
Identities = 169/188 (89%), Positives = 177/188 (94%)
Frame = +2
Query: 119 EENREKQNGEESVKVFVGQIPRHMSESQLLTLFREFADVDEVNIIKDKITRASRGCCFVQ 298
EENREK EESVK+FVGQIP+HMSESQLLTLF+EFA VDEVNIIKDKITRASRGCCF+
Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65
Query: 299 CPSREEADKLVNTCHNKKTLPGAASLLQVKYADGELERLEHKLFVGMLPKNVSETELLSL 478
CPSREEADKLVN CHNKKTLPGA SLLQVKYADGELERLEHKLFVGMLPKNVSE E+ SL
Sbjct: 66 CPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSL 125
Query: 479 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMEAINGKHKMEGSTVPLVVKWAD 658
FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAME+INGKHKMEGSTVPLVVKWAD
Sbjct: 126 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 659 TEKEPHKK 682
TE+E H +
Sbjct: 186 TERERHTR 193
Score = 66 bits (160), Expect = 2e-011
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +3
Query: 657 TQKRSHTRRLQKAQSDMARLANPDPTNPSLFGALPMSYTP 776
T++ HTRRLQKAQS +ARL N DPTNPSLFGALPM Y P
Sbjct: 186 TERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVP 225
>TAIR9_protein||AT4G03110.2 | Symbols: | RNA-binding protein, putative |
chr4:1376710-1379275 REVERSE
Length = 440
Score = 340 bits (871), Expect = 7e-094
Identities = 169/188 (89%), Positives = 177/188 (94%)
Frame = +2
Query: 119 EENREKQNGEESVKVFVGQIPRHMSESQLLTLFREFADVDEVNIIKDKITRASRGCCFVQ 298
EENREK EESVK+FVGQIP+HMSESQLLTLF+EFA VDEVNIIKDKITRASRGCCF+
Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65
Query: 299 CPSREEADKLVNTCHNKKTLPGAASLLQVKYADGELERLEHKLFVGMLPKNVSETELLSL 478
CPSREEADKLVN CHNKKTLPGA SLLQVKYADGELERLEHKLFVGMLPKNVSE E+ SL
Sbjct: 66 CPSREEADKLVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSL 125
Query: 479 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMEAINGKHKMEGSTVPLVVKWAD 658
FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAME+INGKHKMEGSTVPLVVKWAD
Sbjct: 126 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 659 TEKEPHKK 682
TE+E H +
Sbjct: 186 TERERHTR 193
Score = 66 bits (160), Expect = 2e-011
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +3
Query: 657 TQKRSHTRRLQKAQSDMARLANPDPTNPSLFGALPMSYTP 776
T++ HTRRLQKAQS +ARL N DPTNPSLFGALPM Y P
Sbjct: 186 TERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVP 225
>TAIR9_protein||AT1G03457.1 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 430
Score = 292 bits (746), Expect = 2e-079
Identities = 140/180 (77%), Positives = 163/180 (90%)
Frame = +2
Query: 131 EKQNGEESVKVFVGQIPRHMSESQLLTLFREFADVDEVNIIKDKITRASRGCCFVQCPSR 310
E EE VK+FVGQ+P+HM+E QLLTLFREF+ V+EVNIIK+K TRA RGCCF+ CP+R
Sbjct: 4 ETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTR 63
Query: 311 EEADKLVNTCHNKKTLPGAASLLQVKYADGELERLEHKLFVGMLPKNVSETELLSLFSKY 490
E+ADK++N+ HNKKTLPGA+S LQVKYADGELERLEHKLFVGMLPKNVSETE+ SLFS+Y
Sbjct: 64 EDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEY 123
Query: 491 GTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMEAINGKHKMEGSTVPLVVKWADTEKE 670
GTIKDLQILRG+ QTSKGC FLKYE+KEQAV+AMEA+NG+H MEG+ VPL+VKWADTEKE
Sbjct: 124 GTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKE 183
Score = 49 bits (114), Expect = 4e-006
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Frame = +3
Query: 657 TQKRSHTRRLQKAQSDMARLANPDPTNPSLFGALPMSYTP 776
T+K RRL K QS ++RL DP NPS+FGALPMSY P
Sbjct: 180 TEKERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVP 216
>TAIR9_protein||AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
chr4:9207164-9214412 REVERSE
Length = 748
Score = 153 bits (386), Expect = 1e-037
Identities = 72/175 (41%), Positives = 117/175 (66%), Gaps = 3/175 (1%)
Frame = +2
Query: 152 SVKVFVGQIPRHMSESQLLTLFREFADVDEVNIIKDKITRASRGCCFVQCPSREEADKLV 331
+VK+FVG +PR +E ++ F + +V EV +IKDK T +GCCFV+ + ++AD+ +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 332 NTCHNKKTLPGAASLLQVKYADGELER---LEHKLFVGMLPKNVSETELLSLFSKYGTIK 502
HN+ TLPG +QV+YADGE ER LE KLFVG L K +E E+ +F ++G ++
Sbjct: 179 RALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVE 238
Query: 503 DLQILRGAQQTSKGCAFLKYETKEQAVSAMEAINGKHKMEGSTVPLVVKWADTEK 667
D+ ++R + S+GC F+KY +KE A++A++ +NG + M G PL+V++A+ ++
Sbjct: 239 DVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>TAIR9_protein||AT4G16280.3 | Symbols: FCA | FCA; RNA binding |
chr4:9208564-9214412 REVERSE
Length = 534
Score = 153 bits (386), Expect = 1e-037
Identities = 72/175 (41%), Positives = 117/175 (66%), Gaps = 3/175 (1%)
Frame = +2
Query: 152 SVKVFVGQIPRHMSESQLLTLFREFADVDEVNIIKDKITRASRGCCFVQCPSREEADKLV 331
+VK+FVG +PR +E ++ F + +V EV +IKDK T +GCCFV+ + ++AD+ +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 332 NTCHNKKTLPGAASLLQVKYADGELER---LEHKLFVGMLPKNVSETELLSLFSKYGTIK 502
HN+ TLPG +QV+YADGE ER LE KLFVG L K +E E+ +F ++G ++
Sbjct: 179 RALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVE 238
Query: 503 DLQILRGAQQTSKGCAFLKYETKEQAVSAMEAINGKHKMEGSTVPLVVKWADTEK 667
D+ ++R + S+GC F+KY +KE A++A++ +NG + M G PL+V++A+ ++
Sbjct: 239 DVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>TAIR9_protein||AT1G03457.2 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 439
Score = 149 bits (375), Expect = 2e-036
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +2
Query: 416 EHKLFVGMLPKNVSETELLSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAME 595
EHKLFVGMLPKNVSETE+ SLFS+YGTIKDLQILRG+ QTSKGC FLKYE+KEQAV+AME
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAME 167
Query: 596 AINGKHKMEGSTVPLVVKWADTEKE 670
A+NG+H MEG+ VPL+VKWADTEKE
Sbjct: 168 ALNGRHIMEGANVPLIVKWADTEKE 192
Score = 148 bits (373), Expect = 4e-036
Identities = 69/96 (71%), Positives = 84/96 (87%)
Frame = +2
Query: 131 EKQNGEESVKVFVGQIPRHMSESQLLTLFREFADVDEVNIIKDKITRASRGCCFVQCPSR 310
E EE VK+FVGQ+P+HM+E QLLTLFREF+ V+EVNIIK+K TRA RGCCF+ CP+R
Sbjct: 4 ETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTR 63
Query: 311 EEADKLVNTCHNKKTLPGAASLLQVKYADGELERLE 418
E+ADK++N+ HNKKTLPGA+S LQVKYADGELERL+
Sbjct: 64 EDADKVINSFHNKKTLPGASSPLQVKYADGELERLD 99
Score = 63 bits (152), Expect = 2e-010
Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +2
Query: 422 KLFVGMLPKNVSETELLSLFSKYGTIKDLQILR-GAQQTSKGCAFLKYETKEQAVSAMEA 598
KLFVG +PK+++E +LL+LF ++ + ++ I++ + +GC FL T+E A + +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 599 INGKHKMEGSTVPLVVKWADTEKE 670
+ K + G++ PL VK+AD E E
Sbjct: 73 FHNKKTLPGASSPLQVKYADGELE 96
Score = 49 bits (114), Expect = 4e-006
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Frame = +3
Query: 657 TQKRSHTRRLQKAQSDMARLANPDPTNPSLFGALPMSYTP 776
T+K RRL K QS ++RL DP NPS+FGALPMSY P
Sbjct: 189 TEKERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVP 225
>TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A)
BINDING 2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 630
Score = 50 bits (118), Expect = 1e-006
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +2
Query: 377 LQVKYADGELERLE----HKLFVGMLPKNVSETELLSLFSKYGTIKDLQILRGAQQTSKG 544
L+V+Y E + L+V L ++S+ +L +FS +GT+ +++R TSKG
Sbjct: 300 LRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKG 359
Query: 545 CAFLKYETKEQAVSAMEAINGK 610
F+ + T E+A AM ++GK
Sbjct: 360 SGFVAFATPEEATEAMSQLSGK 381
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,797,266,598
Number of Sequences: 33410
Number of Extensions: 27797266598
Number of Successful Extensions: 910750593
Number of sequences better than 0.0: 0
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