BLASTX 7.6.2
Query= UN62620 /QuerySize=573
(572 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297837119|ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subs... 129 4e-028
gi|30696792|ref|NP_176490.2| nuclear RNA polymerase D1A [Arabido... 124 9e-027
gi|225426759|ref|XP_002275898.1| PREDICTED: hypothetical protein... 91 6e-017
gi|297742608|emb|CBI34757.3| unnamed protein product [Vitis vini... 91 6e-017
gi|224053985|ref|XP_002298071.1| RNA polymerase IV subunit [Popu... 82 3e-014
gi|255537259|ref|XP_002509696.1| DNA-directed RNA polymerase, pu... 77 1e-012
gi|242074052|ref|XP_002446962.1| hypothetical protein SORBIDRAFT... 70 2e-010
gi|308080362|ref|NP_001182824.1| DNA dependent RNA polymerase D ... 69 4e-010
gi|219662986|gb|ACL30982.1| mutant DNA dependent RNA polymerase ... 69 4e-010
gi|238013416|gb|ACR37743.1| unknown [Zea mays] 69 4e-010
gi|115480591|ref|NP_001063889.1| Os09g0555200 [Oryza sativa Japo... 67 2e-009
gi|215736910|dbj|BAG95839.1| unnamed protein product [Oryza sati... 67 2e-009
gi|218202606|gb|EEC85033.1| hypothetical protein OsI_32338 [Oryz... 67 2e-009
gi|115460018|ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japo... 65 6e-009
gi|116309922|emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indic... 65 6e-009
gi|168011278|ref|XP_001758330.1| predicted protein [Physcomitrel... 63 2e-008
gi|302781186|ref|XP_002972367.1| hypothetical protein SELMODRAFT... 60 1e-007
gi|303277021|ref|XP_003057804.1| predicted protein [Micromonas p... 60 2e-007
gi|302780129|ref|XP_002971839.1| hypothetical protein SELMODRAFT... 60 2e-007
gi|226503966|ref|NP_001148729.1| LOC100282345 [Zea mays] 58 8e-007
>gi|297837119|ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata]
Length = 1456
Score = 129 bits (322), Expect = 4e-028
Identities = 58/76 (76%), Positives = 66/76 (86%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 385
HPN +KIGPG KGI+VA SKHG +RCFEVVR DGT EDFSYHKCVLGAT+IIAPK+VN
Sbjct: 1373 HPNSADKIGPGLKGIRVAKSKHGDSRCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKVNL 1432
Query: 384 YKAKYLRNGTVQPGAI 337
YK+KYL+NGT QPG +
Sbjct: 1433 YKSKYLKNGTHQPGRL 1448
>gi|30696792|ref|NP_176490.2| nuclear RNA polymerase D1A [Arabidopsis thaliana]
Length = 1453
Score = 124 bits (310), Expect = 9e-027
Identities = 56/74 (75%), Positives = 65/74 (87%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 385
HPN EKIGPG KGI+VA SKHG + CFEVVR DGT EDFSYHKCVLGAT+IIAPK++NF
Sbjct: 1374 HPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNF 1433
Query: 384 YKAKYLRNGTVQPG 343
YK+KYL+NGT++ G
Sbjct: 1434 YKSKYLKNGTLESG 1447
>gi|225426759|ref|XP_002275898.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 1391
Score = 91 bits (225), Expect = 6e-017
Identities = 43/68 (63%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP RDEKIGPG + IKV +SK+ RCF +VRTDGT EDFSYHKCV GA EII P+R
Sbjct: 1319 FHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRA 1378
Query: 390 NFYKAKYL 367
Y++++L
Sbjct: 1379 RSYQSRWL 1386
>gi|297742608|emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 91 bits (225), Expect = 6e-017
Identities = 43/68 (63%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP RDEKIGPG + IKV +SK+ RCF +VRTDGT EDFSYHKCV GA EII P+R
Sbjct: 1277 FHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRA 1336
Query: 390 NFYKAKYL 367
Y++++L
Sbjct: 1337 RSYQSRWL 1344
>gi|224053985|ref|XP_002298071.1| RNA polymerase IV subunit [Populus
trichocarpa]
Length = 1517
Score = 82 bits (202), Expect = 3e-014
Identities = 42/68 (61%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVAN-SKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP RDEKIG G K IKV N ++ RCF +VRTDGT EDFSY KC+ A EIIAP+R
Sbjct: 1431 FHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEIIAPQRA 1490
Query: 390 NFYKAKYL 367
Y KYL
Sbjct: 1491 KRYCEKYL 1498
>gi|255537259|ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus
communis]
Length = 1475
Score = 77 bits (188), Expect = 1e-012
Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKR 394
FHP ++EKIG GFK IKV + ++ +RCF +VR+DGT EDFSY KCV GA EIIAP +
Sbjct: 1333 FHPRKEEKIGSGFKDIKVVKHPEYQDSRCFSLVRSDGTIEDFSYRKCVYGALEIIAPHK 1391
>gi|242074052|ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933
[Sorghum bicolor]
Length = 1203
Score = 70 bits (170), Expect = 2e-010
Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP EKIG G + IKV N H RCF ++R D TTEDFSYHKCV GA I+P+
Sbjct: 1134 FHPRGAEKIGVGVREIKVGLNPNHPGTRCFILLRNDDTTEDFSYHKCVHGAANSISPQLG 1193
Query: 390 NFYKAKYLR 364
++ K Y R
Sbjct: 1194 SYLKKLYHR 1202
>gi|308080362|ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit
[Zea mays]
Length = 1444
Score = 69 bits (166), Expect = 4e-010
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FH EKIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434
Query: 390 NFYKAKYLR 364
++ K Y R
Sbjct: 1435 SYLKKLYYR 1443
>gi|219662986|gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest
subunit rpd1-8 [Zea mays]
Length = 1444
Score = 69 bits (166), Expect = 4e-010
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FH EKIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434
Query: 390 NFYKAKYLR 364
++ K Y R
Sbjct: 1435 SYLKKLYYR 1443
>gi|238013416|gb|ACR37743.1| unknown [Zea mays]
Length = 101
Score = 69 bits (166), Expect = 4e-010
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FH EKIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 32 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 91
Query: 390 NFYKAKYLR 364
++ K Y R
Sbjct: 92 SYLKKLYYR 100
>gi|115480591|ref|NP_001063889.1| Os09g0555200 [Oryza sativa Japonica Group]
Length = 318
Score = 67 bits (161), Expect = 2e-009
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V R+D T+ DFSY+KCVLGA I+P+ +
Sbjct: 242 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE-L 300
Query: 390 NFYKAKYLRNGTVQP 346
Y K L N ++P
Sbjct: 301 GSYIEKILSNRAIRP 315
>gi|215736910|dbj|BAG95839.1| unnamed protein product [Oryza sativa Japonica
Group]
Length = 158
Score = 67 bits (161), Expect = 2e-009
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V R+D T+ DFSY+KCVLGA I+P+ +
Sbjct: 82 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE-L 140
Query: 390 NFYKAKYLRNGTVQP 346
Y K L N ++P
Sbjct: 141 GSYIEKILSNRAIRP 155
>gi|218202606|gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica
Group]
Length = 1384
Score = 67 bits (161), Expect = 2e-009
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V R+D T+ DFSY+KCVLGA I+P+ +
Sbjct: 1308 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE-L 1366
Query: 390 NFYKAKYLRNGTVQP 346
Y K L N ++P
Sbjct: 1367 GSYIEKILSNRAIRP 1381
>gi|115460018|ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japonica Group]
Length = 449
Score = 65 bits (156), Expect = 6e-009
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V+R D TT DFSY+KCVLGA I+P+ +
Sbjct: 373 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE-L 431
Query: 390 NFYKAKYLRNGTVQP 346
Y N V+P
Sbjct: 432 GSYIENRRSNRAVRP 446
>gi|116309922|emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
Length = 1407
Score = 65 bits (156), Expect = 6e-009
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V+R D TT DFSY+KCVLGA I+P+ +
Sbjct: 1331 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE-L 1389
Query: 390 NFYKAKYLRNGTVQP 346
Y N V+P
Sbjct: 1390 GSYIENRRSNRAVRP 1404
>gi|168011278|ref|XP_001758330.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 96
Score = 63 bits (151), Expect = 2e-008
Identities = 33/64 (51%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVN 388
HP +EKIG G IK+ +S K RCF +VRTDGT DFSYHKCV I P V+
Sbjct: 23 HPKSEEKIGCGIDYIKINRHSTFNKVRCFWIVRTDGTETDFSYHKCVKAKIAIEYPNFVD 82
Query: 387 FYKA 376
Y A
Sbjct: 83 SYDA 86
>gi|302781186|ref|XP_002972367.1| hypothetical protein SELMODRAFT_413061
[Selaginella moellendorffii]
Length = 1444
Score = 60 bits (145), Expect = 1e-007
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCVL----GATEIIAP 400
+HP D K+G G + I+V N RCF +VR DG+ EDFSYH+C+L G T +
Sbjct: 1328 YHPMMDSKVGCGVRHIRVDNHHSFGGRCFHIVRLDGSVEDFSYHRCLLERIKGNTVL--- 1384
Query: 399 KRVNFYKAKYLR 364
V YK KY++
Sbjct: 1385 --VQRYKKKYMK 1394
>gi|303277021|ref|XP_003057804.1| predicted protein [Micromonas pusilla
CCMP1545]
Length = 156
Score = 60 bits (144), Expect = 2e-007
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCV 427
HP+ ++KIG G K ++ + RC+ V+RTDGTTEDFSY KCV
Sbjct: 34 HPDAEKKIGSGIKAFQIRTHPEHETRCYTVIRTDGTTEDFSYRKCV 79
>gi|302780129|ref|XP_002971839.1| hypothetical protein SELMODRAFT_441655
[Selaginella moellendorffii]
Length = 1438
Score = 60 bits (143), Expect = 2e-007
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCVL----GATEIIAP 400
+HP D K+G G + I+V N RCF +VR DG+ EDFSYHKC+L G T +
Sbjct: 1325 YHPMMDSKVGCGVRHIRVDNHHSFGGRCFHIVRLDGSVEDFSYHKCLLERIKGNTVL--- 1381
Query: 399 KRVNFYKAKYL--RNG 358
V YK K++ +NG
Sbjct: 1382 --VQRYKKKFMGGKNG 1395
>gi|226503966|ref|NP_001148729.1| LOC100282345 [Zea mays]
Length = 191
Score = 58 bits (138), Expect = 8e-007
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 385
HP +EKIG G GI V K+RC VVRT+G EDFSYHKC+ + K+
Sbjct: 103 HPRAEEKIGCGLDGIMVDRHPEFKSRCLFVVRTNGDWEDFSYHKCLRAYLQ----KKYPS 158
Query: 384 YKAKYLRNGTV 352
Y K+L+ V
Sbjct: 159 YSDKFLKKHLV 169
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,461,303,747
Number of Sequences: 15229318
Number of Extensions: 13461303747
Number of Successful Extensions: 8729737
Number of sequences better than 0.0: 0
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