BLASTX 7.6.2
Query= UN62620 /QuerySize=573
(572 letters)
Database: UniProt/TrEMBL;
11,397,958 sequences; 3,661,877,547 total letters
Score E
Sequences producing significant alignments: (bits) Value
tr|Q9LQ02|Q9LQ02_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 124 6e-027
tr|B9GKP9|B9GKP9_POPTR DNA-directed RNA polymerase OS=Populus tr... 82 2e-014
tr|B9RC12|B9RC12_RICCO DNA-directed RNA polymerase OS=Ricinus co... 77 9e-013
tr|C5YE51|C5YE51_SORBI DNA-directed RNA polymerase OS=Sorghum bi... 70 1e-010
tr|C0JR65|C0JR65_MAIZE DNA-directed RNA polymerase OS=Zea mays P... 69 3e-010
tr|C0JR68|C0JR68_MAIZE DNA-directed RNA polymerase OS=Zea mays P... 69 3e-010
tr|C4J993|C4J993_MAIZE Putative uncharacterized protein OS=Zea m... 69 3e-010
tr|B7ETZ2|B7ETZ2_ORYSJ cDNA clone:J033116N09, full insert sequen... 67 1e-009
tr|B8BED0|B8BED0_ORYSI DNA-directed RNA polymerase OS=Oryza sati... 67 1e-009
tr|B9G500|B9G500_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 67 1e-009
tr|Q0IZR2|Q0IZR2_ORYSJ Os09g0555200 protein (Fragment) OS=Oryza ... 67 1e-009
tr|Q01JX0|Q01JX0_ORYSA DNA-directed RNA polymerase OS=Oryza sati... 65 4e-009
tr|Q0JAW4|Q0JAW4_ORYSJ Os04g0572600 protein OS=Oryza sativa subs... 65 4e-009
tr|A9RW73|A9RW73_PHYPA Predicted protein (Fragment) OS=Physcomit... 63 2e-008
tr|C1MQR3|C1MQR3_9CHLO Predicted protein OS=Micromonas pusilla C... 60 1e-007
tr|Q1L5X6|Q1L5X6_SOLLC DNA-directed RNA polymerase (Fragment) OS... 59 2e-007
tr|B6T6D8|B6T6D8_MAIZE DCL protein OS=Zea mays PE=2 SV=1 58 5e-007
tr|C1DYA3|C1DYA3_9CHLO Predicted protein OS=Micromonas sp. RCC29... 56 2e-006
tr|D5AE78|D5AE78_PICSI Putative uncharacterized protein OS=Picea... 55 3e-006
>tr|Q9LQ02|Q9LQ02_ARATH DNA-directed RNA polymerase OS=Arabidopsis thaliana
GN=RPD1 PE=2 SV=1
Length = 1453
Score = 124 bits (310), Expect = 6e-027
Identities = 56/74 (75%), Positives = 65/74 (87%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 385
HPN EKIGPG KGI+VA SKHG + CFEVVR DGT EDFSYHKCVLGAT+IIAPK++NF
Sbjct: 1374 HPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNF 1433
Query: 384 YKAKYLRNGTVQPG 343
YK+KYL+NGT++ G
Sbjct: 1434 YKSKYLKNGTLESG 1447
>tr|B9GKP9|B9GKP9_POPTR DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD901 PE=3 SV=1
Length = 1517
Score = 82 bits (202), Expect = 2e-014
Identities = 42/68 (61%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVAN-SKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP RDEKIG G K IKV N ++ RCF +VRTDGT EDFSY KC+ A EIIAP+R
Sbjct: 1431 FHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEIIAPQRA 1490
Query: 390 NFYKAKYL 367
Y KYL
Sbjct: 1491 KRYCEKYL 1498
>tr|B9RC12|B9RC12_RICCO DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1683300 PE=3 SV=1
Length = 1475
Score = 77 bits (188), Expect = 9e-013
Identities = 36/59 (61%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKR 394
FHP ++EKIG GFK IKV + ++ +RCF +VR+DGT EDFSY KCV GA EIIAP +
Sbjct: 1333 FHPRKEEKIGSGFKDIKVVKHPEYQDSRCFSLVRSDGTIEDFSYRKCVYGALEIIAPHK 1391
>tr|C5YE51|C5YE51_SORBI DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb06g025933 PE=3 SV=1
Length = 1203
Score = 70 bits (170), Expect = 1e-010
Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP EKIG G + IKV N H RCF ++R D TTEDFSYHKCV GA I+P+
Sbjct: 1134 FHPRGAEKIGVGVREIKVGLNPNHPGTRCFILLRNDDTTEDFSYHKCVHGAANSISPQLG 1193
Query: 390 NFYKAKYLR 364
++ K Y R
Sbjct: 1194 SYLKKLYHR 1202
>tr|C0JR65|C0JR65_MAIZE DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 69 bits (166), Expect = 3e-010
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FH EKIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434
Query: 390 NFYKAKYLR 364
++ K Y R
Sbjct: 1435 SYLKKLYYR 1443
>tr|C0JR68|C0JR68_MAIZE DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 69 bits (166), Expect = 3e-010
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FH EKIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434
Query: 390 NFYKAKYLR 364
++ K Y R
Sbjct: 1435 SYLKKLYYR 1443
>tr|C4J993|C4J993_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1
Length = 101
Score = 69 bits (166), Expect = 3e-010
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FH EKIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 32 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 91
Query: 390 NFYKAKYLR 364
++ K Y R
Sbjct: 92 SYLKKLYYR 100
>tr|B7ETZ2|B7ETZ2_ORYSJ cDNA clone:J033116N09, full insert sequence OS=Oryza
sativa subsp. japonica PE=2 SV=1
Length = 158
Score = 67 bits (161), Expect = 1e-009
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V R+D T+ DFSY+KCVLGA I+P+ +
Sbjct: 82 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE-L 140
Query: 390 NFYKAKYLRNGTVQP 346
Y K L N ++P
Sbjct: 141 GSYIEKILSNRAIRP 155
>tr|B8BED0|B8BED0_ORYSI DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_32338 PE=3 SV=1
Length = 1384
Score = 67 bits (161), Expect = 1e-009
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V R+D T+ DFSY+KCVLGA I+P+ +
Sbjct: 1308 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE-L 1366
Query: 390 NFYKAKYLRNGTVQP 346
Y K L N ++P
Sbjct: 1367 GSYIEKILSNRAIRP 1381
>tr|B9G500|B9G500_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_30285 PE=3 SV=1
Length = 1384
Score = 67 bits (161), Expect = 1e-009
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V R+D T+ DFSY+KCVLGA I+P+ +
Sbjct: 1308 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE-L 1366
Query: 390 NFYKAKYLRNGTVQP 346
Y K L N ++P
Sbjct: 1367 GSYIEKILSNRAIRP 1381
>tr|Q0IZR2|Q0IZR2_ORYSJ Os09g0555200 protein (Fragment) OS=Oryza sativa subsp.
japonica GN=Os09g0555200 PE=4 SV=1
Length = 318
Score = 67 bits (161), Expect = 1e-009
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V R+D T+ DFSY+KCVLGA I+P+ +
Sbjct: 242 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE-L 300
Query: 390 NFYKAKYLRNGTVQP 346
Y K L N ++P
Sbjct: 301 GSYIEKILSNRAIRP 315
>tr|Q01JX0|Q01JX0_ORYSA DNA-directed RNA polymerase OS=Oryza sativa
GN=OSIGBa0147H17.3 PE=3 SV=1
Length = 1407
Score = 65 bits (156), Expect = 4e-009
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V+R D TT DFSY+KCVLGA I+P+ +
Sbjct: 1331 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE-L 1389
Query: 390 NFYKAKYLRNGTVQP 346
Y N V+P
Sbjct: 1390 GSYIENRRSNRAVRP 1404
>tr|Q0JAW4|Q0JAW4_ORYSJ Os04g0572600 protein OS=Oryza sativa subsp. japonica
GN=Os04g0572600 PE=4 SV=1
Length = 449
Score = 65 bits (156), Expect = 4e-009
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 391
FHP +KIG G + IK+ N H +RCF V+R D TT DFSY+KCVLGA I+P+ +
Sbjct: 373 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE-L 431
Query: 390 NFYKAKYLRNGTVQP 346
Y N V+P
Sbjct: 432 GSYIENRRSNRAVRP 446
>tr|A9RW73|A9RW73_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_120267 PE=4 SV=1
Length = 96
Score = 63 bits (151), Expect = 2e-008
Identities = 33/64 (51%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVN 388
HP +EKIG G IK+ +S K RCF +VRTDGT DFSYHKCV I P V+
Sbjct: 23 HPKSEEKIGCGIDYIKINRHSTFNKVRCFWIVRTDGTETDFSYHKCVKAKIAIEYPNFVD 82
Query: 387 FYKA 376
Y A
Sbjct: 83 SYDA 86
>tr|C1MQR3|C1MQR3_9CHLO Predicted protein OS=Micromonas pusilla CCMP1545
GN=MICPUCDRAFT_16484 PE=4 SV=1
Length = 156
Score = 60 bits (144), Expect = 1e-007
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCV 427
HP+ ++KIG G K ++ + RC+ V+RTDGTTEDFSY KCV
Sbjct: 34 HPDAEKKIGSGIKAFQIRTHPEHETRCYTVIRTDGTTEDFSYRKCV 79
>tr|Q1L5X6|Q1L5X6_SOLLC DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPD1 PE=2 SV=1
Length = 1138
Score = 59 bits (142), Expect = 2e-007
Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = -3
Query: 564 HPNRDEKIGPGF-KGIKVA-NSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKR 394
HP R+EKIG G K IK+ + + +RCF VVR+D T EDFSY KC+ A E+IAP++
Sbjct: 1068 HPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQK 1126
>tr|B6T6D8|B6T6D8_MAIZE DCL protein OS=Zea mays PE=2 SV=1
Length = 191
Score = 58 bits (138), Expect = 5e-007
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 385
HP +EKIG G GI V K+RC VVRT+G EDFSYHKC+ + K+
Sbjct: 103 HPRAEEKIGCGLDGIMVDRHPEFKSRCLFVVRTNGDWEDFSYHKCLRAYLQ----KKYPS 158
Query: 384 YKAKYLRNGTV 352
Y K+L+ V
Sbjct: 159 YSDKFLKKHLV 169
>tr|C1DYA3|C1DYA3_9CHLO Predicted protein OS=Micromonas sp. RCC299
GN=MICPUN_56008 PE=4 SV=1
Length = 218
Score = 56 bits (134), Expect = 2e-006
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -3
Query: 564 HPNRDEKIGPGFKGIKVANSKHGKARCFEVVRTDGTTEDFSYHKCV 427
HP ++KIG G K ++ +RC+ VVRTDGT EDFSY KCV
Sbjct: 100 HPEAEKKIGCGIKSFQIRTHPEHDSRCYMVVRTDGTCEDFSYRKCV 145
>tr|D5AE78|D5AE78_PICSI Putative uncharacterized protein OS=Picea sitchensis
PE=2 SV=1
Length = 231
Score = 55 bits (132), Expect = 3e-006
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = -3
Query: 567 FHPNRDEKIGPGFKGIKV-ANSKHGKARCFEVVRTDGTTEDFSYHKCVLGATEIIAP 400
+HP +K G G + I + +N K+RCF VVR DG+ EDFSYHKC+ G +P
Sbjct: 159 YHPRSKDKTGVGIEEIMIGSNPAFPKSRCFVVVRKDGSREDFSYHKCMRGLAGHFSP 215
Database: UniProt/TrEMBL
Posted date: Sat Aug 07 14:51:12 2010
Number of letters in database: 3,661,877,547
Number of sequences in database: 11,397,958
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,289,416,202,632
Number of Sequences: 11397958
Number of Extensions: 4289416202632
Number of Successful Extensions: 1506112479
Number of sequences better than 0.0: 0
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