BLASTX 7.6.2
Query= UN63593 /QuerySize=623
(622 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G44020.1 | Symbols: | mitochondrial transcrip... 231 4e-061
TAIR9_protein||AT4G02990.1 | Symbols: | mitochondrial transcrip... 120 8e-028
TAIR9_protein||AT1G78930.1 | Symbols: | mitochondrial transcrip... 61 6e-010
TAIR9_protein||AT2G36000.2 | Symbols: | mitochondrial transcrip... 60 7e-010
TAIR9_protein||AT2G03050.1 | Symbols: | mitochondrial transcrip... 60 1e-009
TAIR9_protein||AT3G10810.1 | Symbols: | zinc finger (C3HC4-type... 59 2e-009
TAIR9_protein||AT2G36000.1 | Symbols: | mitochondrial transcrip... 59 2e-009
TAIR9_protein||AT4G14605.1 | Symbols: | FUNCTIONS IN: molecular... 57 8e-009
TAIR9_protein||AT2G34620.1 | Symbols: | mitochondrial transcrip... 56 1e-008
>TAIR9_protein||AT2G44020.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:18217737-18219260
REVERSE
Length = 508
Score = 231 bits (587), Expect = 4e-061
Identities = 110/135 (81%), Positives = 122/135 (90%), Gaps = 6/135 (4%)
Frame = -2
Query: 621 RAFKVEDVARMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYGLESRIK 442
RAF+VED+A+MVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTY LESRIK
Sbjct: 370 RAFQVEDIAKMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIK 429
Query: 441 PRYQKLQGKGIRSSLNWFLNCSDQRFEERLEGNFIDADTAEGGPVFDMGGRLEMPGCGGG 262
PRYQKLQ KGIRSSLNWFLNCSDQRFEERL+GNFID DT GP FDMGG+LEMP G
Sbjct: 430 PRYQKLQSKGIRSSLNWFLNCSDQRFEERLQGNFIDPDTE--GPTFDMGGKLEMP----G 483
Query: 261 GEVVSDEDDDDDESD 217
GE+V+DE++D+ + +
Sbjct: 484 GEIVTDEEEDESDDE 498
>TAIR9_protein||AT4G02990.1 | Symbols: | mitochondrial transcription
termination factor family protein / mTERF family protein |
chr4:1322158-1323783 FORWARD
Length = 542
Score = 120 bits (300), Expect = 8e-028
Identities = 57/137 (41%), Positives = 90/137 (65%), Gaps = 6/137 (4%)
Frame = -2
Query: 615 FKVEDVARMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYGLESRIKPR 436
F ++ MV+ CPQ+L + +MK S+ +++ EM RP+++LV++P +FTYGLES +KPR
Sbjct: 407 FSIDQTREMVIGCPQVLALNLGIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPR 466
Query: 435 YQKLQGKGIRSSLNWFLNCSDQRFEERLEGNFIDADTAEGGP-VFDMGGRLEMPGCGGGG 259
++K+ KGI+ SL W LNCSD++FE+R+ + ID + E P FDM ++
Sbjct: 467 HKKIIKKGIKCSLAWMLNCSDEKFEQRMSYDTIDIEEVETDPSSFDMNTLMQPE-----R 521
Query: 258 EVVSDEDDDDDESDDDE 208
E SD + +++E DDDE
Sbjct: 522 EEESDSEYEEEEDDDDE 538
>TAIR9_protein||AT1G78930.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr1:29678285-29680648
REVERSE
Length = 592
Score = 61 bits (146), Expect = 6e-010
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = -2
Query: 603 DVARMVVRCPQILCSRVE-LMKNSYYFYKTEMGRPMKELVEYPEYFTYGLESRIKPRYQK 427
++A M+ + IL ++ +++ + F M +P++E++EYP YF+Y LE RIKPR++
Sbjct: 494 EIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRV 553
Query: 426 LQGKGIRSSLNWFLNCSDQRF 364
L+G+ I +L L +D+ F
Sbjct: 554 LKGRNIECTLQEMLGKNDEEF 574
>TAIR9_protein||AT2G36000.2 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:15117181-15118333
FORWARD
Length = 319
Score = 60 bits (145), Expect = 7e-010
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = -2
Query: 615 FKVEDVARMVVRCPQIL-CSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYGLESRIKP 439
F M R PQ+ S E + + EMGR ++E++E+P+YF++ LE+RIKP
Sbjct: 223 FSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKP 282
Query: 438 RYQKLQGKGIRSSLNWFLNCSDQRFEERLEGNF 340
R++ KG+R L L ++ F + LE +F
Sbjct: 283 RHEACAAKGVRFPLPVMLKTNEAGFRDTLEVHF 315
>TAIR9_protein||AT2G03050.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:900094-900945
REVERSE
Length = 284
Score = 60 bits (143), Expect = 1e-009
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = -2
Query: 615 FKVEDVARMVVRCPQILCSRVE-LMKNSYYFYKTEMGRPMKELVEYPEYFTYGLESRIKP 439
F E+VA+MVVR P +L V+ + F+ EM +KEL +P+YF++ LE +IKP
Sbjct: 184 FTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKP 243
Query: 438 RYQKLQGKGIRSSLNWFLNCSDQRFEERL 352
R++ L+ GI L+ L SD +F L
Sbjct: 244 RHRLLKEHGILMPLSEMLKVSDGQFNHWL 272
>TAIR9_protein||AT3G10810.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:3381848-3384227 REVERSE
Length = 497
Score = 59 bits (141), Expect = 2e-009
Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Frame = +3
Query: 210 HHHHSHHHHHLHQTQPHHHHHN---QASPTSHPYQTPAPLQQYPHR*SYLPTA-PQTSGH 377
HHHH HHHHH H HHHHHN + +P P +PAP + S P P H
Sbjct: 335 HHHHHHHHHHHHHNHHHHHHHNLSPKMAPEVSPVASPAPHRSRKRAPSAPPPCNPGNRVH 394
Query: 378 YSSRTSSTNS*SLSPAASGT*A*SSTPTHK*NTQDTPPTPSSASPSPSCKSSN------Y 539
+ + +S + +PA S + P H+ ++ P P SA+ S S +
Sbjct: 395 FKEKRVQFSS-TPAPAPS-----AGAPHHQLHS----PAPISAAKSHIVPISAPLPHVVF 444
Query: 540 SSSAQPSSKVSEDTSQPSSQRPQP 611
+ +AQP + PQP
Sbjct: 445 AHAAQPPITEPREPHANEVAHPQP 468
Score = 56 bits (134), Expect = 1e-008
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 210 HHHHSHHHHHLHQTQPHHHHHNQASPTSHPYQTPAPLQQYPHR 338
HHHH HHHHH H HHHHH+ SP P +P PHR
Sbjct: 334 HHHHHHHHHHHHHHNHHHHHHHNLSPKMAPEVSPV-ASPAPHR 375
>TAIR9_protein||AT2G36000.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:15117181-15118182
FORWARD
Length = 334
Score = 59 bits (141), Expect = 2e-009
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = -2
Query: 615 FKVEDVARMVVRCPQIL-CSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYGLESRIKP 439
F M R PQ+ S E + + EMGR ++E++E+P+YF++ LE+RIKP
Sbjct: 223 FSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKP 282
Query: 438 RYQKLQGKGIRSSLNWFLNCSDQRFEERLE 349
R++ KG+R L L ++ F + LE
Sbjct: 283 RHEACAAKGVRFPLPVMLKTNEAGFRDTLE 312
>TAIR9_protein||AT4G14605.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Mitochodrial transcription termination factor-related
(InterPro:IPR003690); BEST Arabidopsis thaliana protein match is:
EMB2219 (embryo defective 2219) (TAIR:AT2G21710.1); Has 760 Blast hits
to 374 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 99;
Fungi - 0; Plants - 624; Viruses - 0; Other Eukaryotes - 37 (source:
NCBI BLink). | chr4:8378815-8380564 FORWARD
Length = 494
Score = 57 bits (136), Expect = 8e-009
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Frame = -2
Query: 621 RAFKVEDVARMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYGLESRIK 442
+ F ++++ M+ R + ++ + Y M P ELV++P++F Y L+ RIK
Sbjct: 382 KGFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQTMDYPKSELVKFPQFFGYSLQERIK 441
Query: 441 PRYQKLQGKGIRSSLNWFLNCSDQRFEE-------RLEGNFIDADTAEGG 313
PRY+ +Q G+R LN L+ S FE+ +L N + A+ + GG
Sbjct: 442 PRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKKMMKLVSNNVIAEQSSGG 491
>TAIR9_protein||AT2G34620.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:14577196-14578203
FORWARD
Length = 304
Score = 56 bits (134), Expect = 1e-008
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = -2
Query: 615 FKVEDVARMVVRCPQILCSRVE-LMKNSYYFYKTEMGRPMKELVEYPEYFTYGLESRIKP 439
F + M++RCP + +E K ++ +E+ ++ L E+P+YF + LE RIKP
Sbjct: 206 FSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKP 265
Query: 438 RYQKLQGKGIRSSLNWFLNCSDQRFEERL 352
R+ + +G+ L+ L +D+ FE+ L
Sbjct: 266 RHLESMERGLELPLSLMLKSTDEEFEQLL 294
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,640,559,185
Number of Sequences: 33410
Number of Extensions: 28640559185
Number of Successful Extensions: 942849535
Number of sequences better than 0.0: 0
|
