BLASTX 7.6.2
Query= UN63960 /QuerySize=584
(583 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB... 294 5e-079
sp|Q39212|RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB... 260 6e-069
sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3... 143 1e-033
sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3... 141 5e-033
sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3... 140 7e-033
sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3... 128 3e-029
sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3... 121 5e-027
sp|P37382|RPB3_SCHPO DNA-directed RNA polymerase II subunit RPB3... 112 2e-024
sp|P16925|CNJC_TETTH Conjugation stage-specific protein OS=Tetra... 96 1e-019
sp|P0CG28|RPOD_METAC DNA-directed RNA polymerase subunit D OS=Me... 80 8e-015
sp|Q8PV16|RPOD_METMA DNA-directed RNA polymerase subunit D OS=Me... 79 2e-014
sp|B1YC30|RPOD_THENV DNA-directed RNA polymerase subunit D OS=Th... 75 3e-013
sp|Q8U0E4|RPOD_PYRFU DNA-directed RNA polymerase subunit D OS=Py... 73 1e-012
sp|Q5JJF4|RPOD_PYRKO DNA-directed RNA polymerase subunit D OS=Py... 71 5e-012
sp|A3MXZ5|RPOD_PYRCJ DNA-directed RNA polymerase subunit D OS=Py... 70 8e-012
sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D OS=Ar... 70 1e-011
sp|A1RSE3|RPOD_PYRIL DNA-directed RNA polymerase subunit D OS=Py... 69 2e-011
sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III sub... 68 3e-011
sp|Q9V198|RPOD_PYRAB DNA-directed RNA polymerase subunit D OS=Py... 68 4e-011
sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III sub... 67 7e-011
>sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB3-A
OS=Arabidopsis thaliana GN=RPB36A PE=2 SV=1
Length = 319
Score = 294 bits (750), Expect = 5e-079
Identities = 148/162 (91%), Positives = 155/162 (95%)
Frame = +1
Query: 97 GATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 276
GATYQRFPK+KIRELKDDYAKFELR+TDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL
Sbjct: 3 GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62
Query: 277 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTS 456
NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQ EFCSVEF L +KC+TDQTLDVTS
Sbjct: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTS 122
Query: 457 RDLYSADPTVTTVDFGIDSSGADSSKQRGIIIVKLRRGQELK 582
RDLYSADPTVT VDF IDSS +DSS+ +GIIIVKLRRGQELK
Sbjct: 123 RDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELK 164
>sp|Q39212|RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB3-B
OS=Arabidopsis thaliana GN=RPB36B PE=1 SV=2
Length = 319
Score = 260 bits (663), Expect = 6e-069
Identities = 133/162 (82%), Positives = 144/162 (88%)
Frame = +1
Query: 97 GATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 276
G TYQRFP VKIRELKDDYAKFELR+TDVSMANALRRVMISEVPT+AI LV+IEVNSSVL
Sbjct: 3 GVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVL 62
Query: 277 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTS 456
NDEFIA RL LIPLTSERAMSMRF +DC+ C+GD EFCSVEF L AKC+TDQTLDVTS
Sbjct: 63 NDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTS 122
Query: 457 RDLYSADPTVTTVDFGIDSSGADSSKQRGIIIVKLRRGQELK 582
RDLYSADPTVT VDF +SS +DSS+ +GIII KLRRGQELK
Sbjct: 123 RDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELK 164
>sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus
GN=POLR2C PE=2 SV=1
Length = 275
Score = 143 bits (359), Expect = 1e-033
Identities = 85/164 (51%), Positives = 111/164 (67%), Gaps = 11/164 (6%)
Frame = +1
Query: 106 YQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 285
Y P V+I EL D+ KF + +TD+++AN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 286 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQGEF---CSVEFHLRAKCITDQTLDVT 453
FIAHRLGLIPLTS+ + +++SRDC C+ EF CSVEF L +C DQT VT
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TCE-----EFCPECSVEFTLDVRCNEDQTRHVT 116
Query: 454 SRDLYSADPTVTTV-DFGIDSSGADSSKQRGIIIVKLRRGQELK 582
SRDL S P V V D+ D +Q I+IVKLR+GQEL+
Sbjct: 117 SRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELR 160
>sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3 OS=Homo
sapiens GN=POLR2C PE=1 SV=2
Length = 275
Score = 141 bits (353), Expect = 5e-033
Identities = 84/164 (51%), Positives = 110/164 (67%), Gaps = 11/164 (6%)
Frame = +1
Query: 106 YQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 285
Y P V+I EL D+ KF + +TD+++AN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 286 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQGEF---CSVEFHLRAKCITDQTLDVT 453
FIAHRLGLIPL S+ + +++SRDC C+ EF CSVEF L +C DQT VT
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDC-TCE-----EFCPECSVEFTLDVRCNEDQTRHVT 116
Query: 454 SRDLYSADPTVTTV-DFGIDSSGADSSKQRGIIIVKLRRGQELK 582
SRDL S P V V D+ D +Q I+IVKLR+GQEL+
Sbjct: 117 SRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELR 160
>sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3 OS=Mus
musculus GN=Polr2c PE=2 SV=1
Length = 275
Score = 140 bits (352), Expect = 7e-033
Identities = 84/164 (51%), Positives = 111/164 (67%), Gaps = 11/164 (6%)
Frame = +1
Query: 106 YQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 285
Y P V+I EL ++ KF + +TD+++AN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 286 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQGEF---CSVEFHLRAKCITDQTLDVT 453
FIAHRLGLIPLTS+ + +++SRDC C+ EF CSVEF L +C DQT VT
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TCE-----EFCPECSVEFTLDVRCNEDQTRHVT 116
Query: 454 SRDLYSADPTVTTV-DFGIDSSGADSSKQRGIIIVKLRRGQELK 582
SRDL S P V V D+ D +Q I+IVKLR+GQEL+
Sbjct: 117 SRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELR 160
>sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3
OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1
Length = 302
Score = 128 bits (321), Expect = 3e-029
Identities = 71/138 (51%), Positives = 91/138 (65%), Gaps = 3/138 (2%)
Frame = +1
Query: 112 RFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 291
R P+++I E+K+D F L +TD+S+ANALRRVMI+EVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 292 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTSRDLYS 471
AHRLGLIPL S+ ++RDC D Q CSVE L KC ++ DVTS DL S
Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSDRCDQ---CSVELRLNVKCTENRPRDVTSSDLLS 126
Query: 472 ADPTVTTVDFGIDSSGAD 525
+ V V + SS ++
Sbjct: 127 QNSAVIPVSSQVTSSNSE 144
>sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3
OS=Saccharomyces cerevisiae GN=RPB3 PE=1 SV=2
Length = 318
Score = 121 bits (301), Expect = 5e-027
Identities = 73/158 (46%), Positives = 96/158 (60%), Gaps = 12/158 (7%)
Frame = +1
Query: 118 PKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 297
P+VKIRE D F L + D++MAN+LRRVMI+E+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 298 RLGLIPLTSERAMSMRFSRDC---DACDGDGQGEFCSVEFHLRAKCITDQTLDVTSRDLY 468
RLGLIPL S + +SRDC D CD CSV L+A ++ T +V S+DL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCEDHCDK------CSVVLTLQAFGESESTTNVYSKDLV 119
Query: 469 SADPTVTTVDFGIDSSGADSSKQRGIIIVKLRRGQELK 582
+ I + G++I KLR+GQELK
Sbjct: 120 IVS---NLMGRNIGHPIIQDKEGNGVLICKLRKGQELK 154
>sp|P37382|RPB3_SCHPO DNA-directed RNA polymerase II subunit RPB3
OS=Schizosaccharomyces pombe GN=rpb3 PE=1 SV=2
Length = 297
Score = 112 bits (278), Expect = 2e-024
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 14/157 (8%)
Frame = +1
Query: 124 VKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 303
+ IR + + F L +T +++AN+LRRV+++E+PTVAIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 304 GLIPLTSER-----AMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTSRDLY 468
G+IPL S + + ++R+CD D CSVE L AKC + T+++ +RDL
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDL- 122
Query: 469 SADPTVTTVDFGIDSSGADSSKQRGIIIVKLRRGQEL 579
V + + + K RG +I KLR+ QE+
Sbjct: 123 -----VVSSNSSLGHPILADPKSRGPLICKLRKEQEI 154
>sp|P16925|CNJC_TETTH Conjugation stage-specific protein OS=Tetrahymena
thermophila GN=CNJC PE=2 SV=1
Length = 310
Score = 96 bits (237), Expect = 1e-019
Identities = 54/158 (34%), Positives = 95/158 (60%), Gaps = 9/158 (5%)
Frame = +1
Query: 121 KVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 300
K+ + L++ +F L + D+S+AN+LRR++++E+ T+AI V++ N+S L DE+IAHR
Sbjct: 5 KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHR 64
Query: 301 LGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTSRDL----- 465
LGLIPL S + + +C+ G+ + C++ F LR T++ L+VTS DL
Sbjct: 65 LGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQD 121
Query: 466 YSADPTVTTVD-FGIDSSGADSSKQRGIIIVKLRRGQE 576
++ + V + + I + ++ GI I+KL +GQ+
Sbjct: 122 HTDEDAVRPIKVYSILRDEYGNKREVGIPIIKLSKGQQ 159
>sp|P0CG28|RPOD_METAC DNA-directed RNA polymerase subunit D OS=Methanosarcina
acetivorans GN=rpoD PE=3 SV=1
Length = 266
Score = 80 bits (196), Expect = 8e-015
Identities = 51/126 (40%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Frame = +1
Query: 121 KVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 300
+V I EL D AKF L + + AN +RR M+++VPT+AI+ V + N+SVL DE +A R
Sbjct: 4 EVDILELSDRSAKFVLSNVSTAFANGIRRAMVADVPTLAIEYVNLYDNTSVLYDEQLALR 63
Query: 301 LGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTSRDLYSADP 480
L LIPL ++ + +CD C G+G C V L A + V SRDL S+DP
Sbjct: 64 LSLIPLATDIETYLP-QAECDVCGGEG-CPACEVSLTLSA----EGPGTVYSRDLISSDP 117
Query: 481 TVTTVD 498
+ D
Sbjct: 118 KIQPAD 123
>sp|Q8PV16|RPOD_METMA DNA-directed RNA polymerase subunit D OS=Methanosarcina
mazei GN=rpoD PE=3 SV=1
Length = 266
Score = 79 bits (193), Expect = 2e-014
Identities = 52/126 (41%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Frame = +1
Query: 121 KVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 300
+V I EL D AKF L ++ AN +RR MI++VPT+AI+ V + N+SVL DE +A R
Sbjct: 4 EVDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALR 63
Query: 301 LGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTSRDLYSADP 480
L LIPL ++ M +C+ C G+G C V L A + V SRDL S+DP
Sbjct: 64 LSLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTLSA----EGPGTVYSRDLISSDP 117
Query: 481 TVTTVD 498
+ D
Sbjct: 118 KIQPAD 123
>sp|B1YC30|RPOD_THENV DNA-directed RNA polymerase subunit D OS=Thermoproteus
neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpoD PE=3 SV=1
Length = 262
Score = 75 bits (182), Expect = 3e-013
Identities = 51/126 (40%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Frame = +1
Query: 118 PKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 297
P VK+ E + K + S+ N+LRRV+ISE+P +AID V + N+SV+ DE +AH
Sbjct: 2 PAVKVVERTPLFLKAVVEGAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLAH 61
Query: 298 RLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTSRDLYSAD 477
RLGLIPLT+ S+ DC++ G C+V F L+ D + V S DL S
Sbjct: 62 RLGLIPLTTP-LQSLPPIEDCES--GLADPSECTVRFTLQVN--ADGEVTVYSGDLVSER 116
Query: 478 PTVTTV 495
P V V
Sbjct: 117 PDVVPV 122
>sp|Q8U0E4|RPOD_PYRFU DNA-directed RNA polymerase subunit D OS=Pyrococcus
furiosus GN=rpoD PE=3 SV=1
Length = 261
Score = 73 bits (178), Expect = 1e-012
Identities = 38/68 (55%), Positives = 47/68 (69%)
Frame = +1
Query: 121 KVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 300
+V+I E K+D KF L+ VS ANALRR ++ EVPT A+D VE N S L DE IAHR
Sbjct: 5 EVQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 64
Query: 301 LGLIPLTS 324
L +IPLT+
Sbjct: 65 LAMIPLTT 72
>sp|Q5JJF4|RPOD_PYRKO DNA-directed RNA polymerase subunit D OS=Pyrococcus
kodakaraensis GN=rpoD PE=3 SV=1
Length = 259
Score = 71 bits (172), Expect = 5e-012
Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Frame = +1
Query: 127 KIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLG 306
KI E + D KF + DV ANALRR ++SEVPT A+D VE N S L DE IAHRL
Sbjct: 5 KILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLA 64
Query: 307 LIPLTSERAMSMRFSRD 357
+IPLT+ RFS D
Sbjct: 65 MIPLTTPHE---RFSLD 78
>sp|A3MXZ5|RPOD_PYRCJ DNA-directed RNA polymerase subunit D OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=rpoD PE=3 SV=1
Length = 258
Score = 70 bits (170), Expect = 8e-012
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Frame = +1
Query: 118 PKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 297
PKV I E +AK + S+ N+LRRV+ISE+P +AID V + N+SV+ DE +AH
Sbjct: 2 PKVSIVEKSQFFAKAVVEGVPPSLINSLRRVIISELPVLAIDSVVVVNNTSVMYDEMLAH 61
Query: 298 RLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTSRDLYSAD 477
RLGLIPLT+ + DC++ G C+V L+ D + V + DL +
Sbjct: 62 RLGLIPLTTP-LKDLPPIEDCES--GLVDPSECTVRLTLQVNATGD--VVVYAGDLVADR 116
Query: 478 PTVTTV 495
P V V
Sbjct: 117 PDVAPV 122
>sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D OS=Archaeoglobus
fulgidus GN=rpoD PE=3 SV=1
Length = 264
Score = 70 bits (169), Expect = 1e-011
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Frame = +1
Query: 118 PKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 297
P+++I E KD KF L++ ++AN+ RR M +EVP +A+D V+I +NSS DE IAH
Sbjct: 3 PEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAH 62
Query: 298 RLGLIPLTSERAMSMRFSRDCD-ACDGDGQGEFCSVEFHLRAK 423
RL ++P+ + RF+ + +C G+G C + F L +
Sbjct: 63 RLAMLPI---KTYLDRFNMQSECSCGGEGCPN-CQISFRLNVE 101
>sp|A1RSE3|RPOD_PYRIL DNA-directed RNA polymerase subunit D OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=rpoD PE=3 SV=1
Length = 262
Score = 69 bits (167), Expect = 2e-011
Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Frame = +1
Query: 118 PKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 297
PK I E + K + S+ N++RRV+ISE+P +AID V I N+SV+ DE +AH
Sbjct: 2 PKATIVEKTPLFLKAVIEGAYPSLVNSIRRVIISELPVMAIDYVVIVSNTSVMYDEMLAH 61
Query: 298 RLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTSRDLYSAD 477
RLGL+PLT+ ++ DC+ G C+V L+ +D+ V S DL S
Sbjct: 62 RLGLVPLTTP-LQALPPIEDCET--GLVDPSECTVRLMLQINAESDKI--VYSGDLVSER 116
Query: 478 PTVTTV 495
P V V
Sbjct: 117 PDVVPV 122
>sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III subunit RPAC1
OS=Bos taurus GN=POLR1C PE=2 SV=1
Length = 346
Score = 68 bits (165), Expect = 3e-011
Identities = 34/103 (33%), Positives = 65/103 (63%), Gaps = 7/103 (6%)
Frame = +1
Query: 121 KVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 300
+V + + ++ +F++ D ++ANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 301 LGLIPLTSE-RAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKC 426
LGLIP+ ++ R R D +G E +++F L+ +C
Sbjct: 110 LGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRC 146
>sp|Q9V198|RPOD_PYRAB DNA-directed RNA polymerase subunit D OS=Pyrococcus abyssi
GN=rpoD PE=3 SV=1
Length = 259
Score = 68 bits (164), Expect = 4e-011
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +1
Query: 121 KVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 300
++KI + DD F L DV+ ANALRR ++ EVPT A+D VE N S L DE IAHR
Sbjct: 3 EIKILKKTDDSITFILEGVDVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 301 LGLIPL 318
L +IPL
Sbjct: 63 LAMIPL 68
>sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III subunit RPAC1
OS=Homo sapiens GN=POLR1C PE=1 SV=1
Length = 346
Score = 67 bits (162), Expect = 7e-011
Identities = 35/104 (33%), Positives = 66/104 (63%), Gaps = 9/104 (8%)
Frame = +1
Query: 121 KVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 300
+V + + ++ +F++ D ++ANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 301 LGLIPLTSE-RAMSMRFSRDCDACDGDGQG-EFCSVEFHLRAKC 426
LGLIP+ ++ R R GD +G E +++F L+ +C
Sbjct: 110 LGLIPIHADPRLFEYR-------NQGDEEGTEIDTLQFRLQVRC 146
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,529,644,891
Number of Sequences: 518415
Number of Extensions: 219529644891
Number of Successful Extensions: 1375220991
Number of sequences better than 0.0: 0
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