BLASTX 7.6.2
Query= UN63960 /QuerySize=584
(583 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, N... 294 5e-080
TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; D... 260 6e-070
TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; D... 260 6e-070
TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 67 5e-012
TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 67 5e-012
TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 67 5e-012
TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA b... 64 5e-011
>TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A |
NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization
| chr2:6733661-6735482 FORWARD
Length = 320
Score = 294 bits (750), Expect = 5e-080
Identities = 148/162 (91%), Positives = 155/162 (95%)
Frame = +1
Query: 97 GATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 276
GATYQRFPK+KIRELKDDYAKFELR+TDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL
Sbjct: 3 GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62
Query: 277 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTS 456
NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQ EFCSVEF L +KC+TDQTLDVTS
Sbjct: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTS 122
Query: 457 RDLYSADPTVTTVDFGIDSSGADSSKQRGIIIVKLRRGQELK 582
RDLYSADPTVT VDF IDSS +DSS+ +GIIIVKLRRGQELK
Sbjct: 123 RDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELK 164
>TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr2:6713022-6714386 FORWARD
Length = 320
Score = 260 bits (663), Expect = 6e-070
Identities = 133/162 (82%), Positives = 144/162 (88%)
Frame = +1
Query: 97 GATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 276
G TYQRFP VKIRELKDDYAKFELR+TDVSMANALRRVMISEVPT+AI LV+IEVNSSVL
Sbjct: 3 GVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVL 62
Query: 277 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTS 456
NDEFIA RL LIPLTSERAMSMRF +DC+ C+GD EFCSVEF L AKC+TDQTLDVTS
Sbjct: 63 NDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTS 122
Query: 457 RDLYSADPTVTTVDFGIDSSGADSSKQRGIIIVKLRRGQELK 582
RDLYSADPTVT VDF +SS +DSS+ +GIII KLRRGQELK
Sbjct: 123 RDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELK 164
>TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr2:6713022-6713918 FORWARD
Length = 236
Score = 260 bits (663), Expect = 6e-070
Identities = 133/162 (82%), Positives = 144/162 (88%)
Frame = +1
Query: 97 GATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 276
G TYQRFP VKIRELKDDYAKFELR+TDVSMANALRRVMISEVPT+AI LV+IEVNSSVL
Sbjct: 3 GVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVL 62
Query: 277 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQTLDVTS 456
NDEFIA RL LIPLTSERAMSMRF +DC+ C+GD EFCSVEF L AKC+TDQTLDVTS
Sbjct: 63 NDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTS 122
Query: 457 RDLYSADPTVTTVDFGIDSSGADSSKQRGIIIVKLRRGQELK 582
RDLYSADPTVT VDF +SS +DSS+ +GIII KLRRGQELK
Sbjct: 123 RDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELK 164
>TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398588-22400155 REVERSE
Length = 303
Score = 67 bits (163), Expect = 5e-012
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Frame = +1
Query: 97 GATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 276
G Y F KV + L +F++ D + ANA RR++I+EVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 277 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQ-TLDVT 453
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 180
Query: 454 SRDL 465
+ DL
Sbjct: 181 TSDL 184
>TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 67 bits (163), Expect = 5e-012
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Frame = +1
Query: 97 GATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 276
G Y F KV + L +F++ D + ANA RR++I+EVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 277 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQ-TLDVT 453
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 180
Query: 454 SRDL 465
+ DL
Sbjct: 181 TSDL 184
>TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 67 bits (163), Expect = 5e-012
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Frame = +1
Query: 97 GATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 276
G Y F KV + L +F++ D + ANA RR++I+EVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 277 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCITDQ-TLDVT 453
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 180
Query: 454 SRDL 465
+ DL
Sbjct: 181 TSDL 184
>TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22331225-22333370 FORWARD
Length = 386
Score = 64 bits (155), Expect = 5e-011
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Frame = +1
Query: 121 KVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 300
KV + L + F++ +ANA RR++++E+P++AI+ V + N+SV+ DE +AHR
Sbjct: 82 KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141
Query: 301 LGLIPLTSERAMSMRFSRDCDACDGDGQGEFCSVEFHLRAKCI 429
LGLIP+ ++ + S + D E ++ F L KC+
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCL 178
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,732,608,678
Number of Sequences: 33410
Number of Extensions: 28732608678
Number of Successful Extensions: 948100919
Number of sequences better than 0.0: 0
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