BLASTX 7.6.2
Query= UN63998 /QuerySize=708
(707 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT... 324 7e-087
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 320 1e-085
gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thal... 319 4e-085
gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein... 235 8e-060
gi|224069480|ref|XP_002326357.1| predicted protein [Populus tric... 216 3e-054
gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis ... 211 7e-053
gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis ... 211 7e-053
gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 ... 211 7e-053
gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT... 210 2e-052
gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucle... 201 1e-049
gi|224140195|ref|XP_002323470.1| predicted protein [Populus tric... 201 1e-049
gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucl... 198 6e-049
gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucle... 198 1e-048
gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast,... 196 2e-048
gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula] 193 2e-047
gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays] 188 8e-046
gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT... 187 2e-045
gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucl... 186 3e-045
gi|255639723|gb|ACU20155.1| unknown [Glycine max] 175 6e-042
gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare ... 172 5e-041
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714
[Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 324 bits (830), Expect = 7e-087
Identities = 180/227 (79%), Positives = 187/227 (82%), Gaps = 13/227 (5%)
Frame = +3
Query: 27 MAASASSLASPPSTLNPFLSP---SRPASTPFLPPSLSFKLNHQSISLSVSA-----ASR 182
MAASASSLA S+ NP P SRPAS LPPSLSFKLN S+S S++A ASR
Sbjct: 1 MAASASSLAL--SSFNPKSLPFCVSRPASVSLLPPSLSFKLNSDSVSFSIAAKWNSPASR 58
Query: 183 FVRNVAVTDDFSVEEEDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAG 362
FVRNVA+T +F V EEDG D APQQ QSFSADLKLFVGNLPF+VDSAQLAQLFESAG
Sbjct: 59 FVRNVAITSEFEV-EEDGFADDAAPQQ--QSFSADLKLFVGNLPFNVDSAQLAQLFESAG 115
Query: 363 NVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRED 542
NVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAA QFNGYELDGR LRVNAGPPPPKRED
Sbjct: 116 NVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPPPPKRED 175
Query: 543 SFSRGPRSSFGSSGSGYGGGGGWWCWFRNRVYVGNLSWGVDDMALES 683
FSRGPRSSFGSSGSGYGGGGG NRVYVGNLSWGVDDMALES
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALES 222
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 320 bits (819), Expect = 1e-085
Identities = 177/227 (77%), Positives = 188/227 (82%), Gaps = 13/227 (5%)
Frame = +3
Query: 27 MAASASSLASPPSTLNPFLSP---SRPASTPFLPPSLSFKLNHQSISLSVSA-----ASR 182
MAASASSLA S+ NP P SRPAS L PSLSFKLN S+S S++A ASR
Sbjct: 1 MAASASSLAL--SSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASR 58
Query: 183 FVRNVAVTDDFSVEEEDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAG 362
FVRNVA+T +F VEE+ F+D AP +EQSFSADLKLFVGNLPF+VDSAQLAQLFESAG
Sbjct: 59 FVRNVAITSEFEVEEDG--FADVAP-PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAG 115
Query: 363 NVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRED 542
NVEMVEVIYDK+TGRSRGFGFVTMSSVSEVEAA QQFNGYELDGR LRVNAGPPPPKRED
Sbjct: 116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED 175
Query: 543 SFSRGPRSSFGSSGSGYGGGGGWWCWFRNRVYVGNLSWGVDDMALES 683
FSRGPRSSFGSSGSGYGGGGG NRVYVGNLSWGVDDMALES
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALES 222
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 319 bits (815), Expect = 4e-085
Identities = 176/227 (77%), Positives = 187/227 (82%), Gaps = 13/227 (5%)
Frame = +3
Query: 27 MAASASSLASPPSTLNPFLSP---SRPASTPFLPPSLSFKLNHQSISLSVSA-----ASR 182
MAASASSLA S+ NP P SRPAS L PSLSFKLN S+S S++A ASR
Sbjct: 1 MAASASSLAL--SSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASR 58
Query: 183 FVRNVAVTDDFSVEEEDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAG 362
F RNVA+T +F VEE+ F+D AP +EQSFSADLKLFVGNLPF+VDSAQLAQLFESAG
Sbjct: 59 FARNVAITSEFEVEEDG--FADVAP-PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAG 115
Query: 363 NVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRED 542
NVEMVEVIYDK+TGRSRGFGFVTMSSVSEVEAA QQFNGYELDGR LRVNAGPPPPKRED
Sbjct: 116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED 175
Query: 543 SFSRGPRSSFGSSGSGYGGGGGWWCWFRNRVYVGNLSWGVDDMALES 683
FSRGPRSSFGSSGSGYGGGGG NRVYVGNLSWGVDDMALES
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALES 222
>gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 288
Score = 235 bits (597), Expect = 8e-060
Identities = 139/227 (61%), Positives = 164/227 (72%), Gaps = 16/227 (7%)
Frame = +3
Query: 33 ASASSLASPPSTLNPFLSPSRPASTPF--LPPSL-SFKLNHQSISLSVSA------ASRF 185
ASASSL P +L L+ S+P S F LP S S KL+ SISLS S+ +SRF
Sbjct: 2 ASASSLVLPSLSLPKTLAISKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSSRF 61
Query: 186 VRNVAVTDDFSVEEEDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGN 365
VRNVAV+ D+ E+++ V SD+ E SFS DLKLFVGNLPF+VDSA LA LFE AGN
Sbjct: 62 VRNVAVSSDY--EQDEDVLSDEG----EPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGN 115
Query: 366 VEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDS 545
VEMVEVIYDK+TGRSRGFGFVTMS+V EVEAA QQFNGYEL+GR LRVN+GPPP +RE+S
Sbjct: 116 VEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENS 175
Query: 546 FSRGPRSSFGSSGSGY-GGGGGWWCWFRNRVYVGNLSWGVDDMALES 683
RG S+F + + G GG NR+YVGNLSWGVDD+ALE+
Sbjct: 176 NFRGENSNFRGENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALET 222
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 216 bits (549), Expect = 3e-054
Identities = 132/228 (57%), Positives = 155/228 (67%), Gaps = 20/228 (8%)
Frame = +3
Query: 30 AASASSLASP----PSTLNPFLSPSRPASTPFLPPSLSFKLNHQSISLSVS------AAS 179
A SASSL P P+T+ F S+P S FL S + + S+ LS +S
Sbjct: 3 ATSASSLVLPSLNHPNTIKSFY--SKPTSLSFLSLSSTSSIKPASLFLSFQQKQQQPLSS 60
Query: 180 RFVRNVAVTDDFSVEEEDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESA 359
RF+++VA++ +F EE+ VF D E SFS DL+LFVGNLPF+V+SAQLA LF+SA
Sbjct: 61 RFLKSVAISSEFGQEED--VFGDG----DEPSFSPDLQLFVGNLPFNVNSAQLADLFKSA 114
Query: 360 GNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRE 539
GNVEMVEV YDKVTGRSRGFGFVTMS++ EVEAA QQFNGYELDGR LRVN+G PPP+RE
Sbjct: 115 GNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQFNGYELDGRPLRVNSG-PPPQRE 173
Query: 540 DSFSRGPRSSFGSSGSGYGGGGGWWCWFRNRVYVGNLSWGVDDMALES 683
SFSR P+ S G G GG NRVYVGNLSW VDD ALES
Sbjct: 174 TSFSRLPQRE-NSFSRGPGARGGETFDSSNRVYVGNLSWNVDDSALES 220
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 211 bits (537), Expect = 7e-053
Identities = 114/151 (75%), Positives = 127/151 (84%), Gaps = 7/151 (4%)
Frame = +3
Query: 177 SRFVRNVAVTDDFSVEEEDGVFS--DDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLF 350
SRFVRNVAV+ DF VEE+D +F+ DD+ + SFS DLKLFVGNL F+VDSAQLAQLF
Sbjct: 61 SRFVRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 119
Query: 351 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPP 530
ESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPP
Sbjct: 120 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 179
Query: 531 KREDSFSRGPRS-SFGSS-GSGYGG--GGGW 611
KRE+SFSRGPRS +GS G GYG GGG+
Sbjct: 180 KREESFSRGPRSGGYGSERGGGYGSERGGGY 210
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 211 bits (537), Expect = 7e-053
Identities = 114/151 (75%), Positives = 127/151 (84%), Gaps = 7/151 (4%)
Frame = +3
Query: 177 SRFVRNVAVTDDFSVEEEDGVFS--DDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLF 350
SRFVRNVAV+ DF VEE+D +F+ DD+ + SFS DLKLFVGNL F+VDSAQLAQLF
Sbjct: 53 SRFVRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 111
Query: 351 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPP 530
ESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPP
Sbjct: 112 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 171
Query: 531 KREDSFSRGPRS-SFGSS-GSGYGG--GGGW 611
KRE+SFSRGPRS +GS G GYG GGG+
Sbjct: 172 KREESFSRGPRSGGYGSERGGGYGSERGGGY 202
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis
thaliana]
Length = 342
Score = 211 bits (537), Expect = 7e-053
Identities = 114/151 (75%), Positives = 127/151 (84%), Gaps = 7/151 (4%)
Frame = +3
Query: 177 SRFVRNVAVTDDFSVEEEDGVFS--DDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLF 350
SRFVRNVAV+ DF VEE+D +F+ DD+ + SFS DLKLFVGNL F+VDSAQLAQLF
Sbjct: 61 SRFVRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 119
Query: 351 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPP 530
ESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPP
Sbjct: 120 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 179
Query: 531 KREDSFSRGPRS-SFGSS-GSGYGG--GGGW 611
KRE+SFSRGPRS +GS G GYG GGG+
Sbjct: 180 KREESFSRGPRSGGYGSERGGGYGSERGGGY 210
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440
[Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 210 bits (533), Expect = 2e-052
Identities = 113/150 (75%), Positives = 126/150 (84%), Gaps = 7/150 (4%)
Frame = +3
Query: 180 RFVRNVAVTDDFSVEEEDGVFS--DDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFE 353
RFVRNVAV+ DF VEE+D +F+ DD+ + SFS DLKLFVGNL F+VDSAQLAQLFE
Sbjct: 62 RFVRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFE 120
Query: 354 SAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPK 533
SAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPPK
Sbjct: 121 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPK 180
Query: 534 REDSFSRGPRS-SFGSS-GSGYGG--GGGW 611
RE+SFSRGPRS +GS G GYG GGG+
Sbjct: 181 REESFSRGPRSGGYGSERGGGYGSERGGGY 210
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP30; Flags: Precursor
Length = 279
Score = 201 bits (509), Expect = 1e-049
Identities = 127/225 (56%), Positives = 149/225 (66%), Gaps = 21/225 (9%)
Frame = +3
Query: 30 AASASSLASPPSTLNPFLSPSRPASTPFLPPSLSFKLNHQSISLSVSA-----ASRFVRN 194
A+SASSL T L P + T L F L S++LS+S+ +SRFVR
Sbjct: 2 ASSASSLHFLSLTPQTLLLPKPTSQTTSLS---FFSLPPSSLNLSLSSPSSCFSSRFVRK 58
Query: 195 VAVTDDFSVEE-EDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVE 371
V + D +E+ EDG D ++E++FS DLK+FVGNL F DSA LA+LFE AGNVE
Sbjct: 59 VTLPDFDQIEDVEDG----DEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVE 114
Query: 372 MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFS 551
MVEVIYDK+TGRSRGFGFVTMSS EVEAA QQFNGYELDGRALRVN+GPPP KRE+
Sbjct: 115 MVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN--- 171
Query: 552 RGPRSSFGSSGSGYGGG-GGWWCWFRNRVYVGNLSWGVDDMALES 683
SSF + S GG GG NRVYVGNL+WGVD ALE+
Sbjct: 172 ----SSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALET 212
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 201 bits (509), Expect = 1e-049
Identities = 121/205 (59%), Positives = 141/205 (68%), Gaps = 20/205 (9%)
Frame = +3
Query: 30 AASASSLASP----PSTLNPFLSPSRPASTPFLPPSLSFKLNHQSISLSVS-----AASR 182
AASASSL P P+T+ F S+P S FL PS + L S+ LS +SR
Sbjct: 3 AASASSLVLPSLNHPNTIKSFY--SKPNSLFFLSPSSTSSLKPVSLLLSFQHQQQPLSSR 60
Query: 183 FVRNVAVTDDFSVEEEDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAG 362
F++NVA++ +F EE+ F D EQSFS DLKLFVGNLPF+VDSA+LA LFE+AG
Sbjct: 61 FLKNVAISSEFGQEED---FLSDG---DEQSFSQDLKLFVGNLPFNVDSARLAGLFETAG 114
Query: 363 NVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRED 542
NVEMVEVIYDKVTGRSRGFGFVTM+++ EVEAA +QFNGYELDGR LRVN GPPP K E
Sbjct: 115 NVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQK-ES 173
Query: 543 SFSRGPR--SSFGSSGSGYGGGGGW 611
SFSRGPR +F S Y G W
Sbjct: 174 SFSRGPRGGETFDSGNRVYVGNLSW 198
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B,
chloroplastic; AltName: Full=CP29B; Flags: Precursor
Length = 291
Score = 198 bits (503), Expect = 6e-049
Identities = 118/212 (55%), Positives = 140/212 (66%), Gaps = 11/212 (5%)
Frame = +3
Query: 78 FLSPSRPASTPFLPPSLSFKLNHQSISLSVSAASRFVRNV-AVTDDFSVEEEDGVF---S 245
F++P P+S F L S++LS+S++S + ++ FS F
Sbjct: 13 FVTPQTPSSLKPNSTLSFFSLPSSSLNLSLSSSSTGLCSIKPFESSFSTRVALSGFDQLE 72
Query: 246 DDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 425
DD ++ FS DLKLFVGNLPF VDSA LA LFE AGNVEMVEVIYDK+TGRSRGFGF
Sbjct: 73 DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGF 132
Query: 426 VTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF---SRGPRSSFG---SSGS 587
VTMS+ EVEAAEQQFNGYE+DGRA+RVNAGP P KRE+S RG SS+G S
Sbjct: 133 VTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNS 192
Query: 588 GYGGG-GGWWCWFRNRVYVGNLSWGVDDMALE 680
+GG GG NRVYVGNLSWGVDD+AL+
Sbjct: 193 SFGGARGGRSVDSSNRVYVGNLSWGVDDLALK 224
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP31; Flags: Precursor
Length = 292
Score = 198 bits (501), Expect = 1e-048
Identities = 123/228 (53%), Positives = 144/228 (63%), Gaps = 26/228 (11%)
Frame = +3
Query: 27 MAASASSLASPPSTLNPFLSPSRPASTPFLPPSLSFKLNHQSISLSVSA---ASRFVRNV 197
+ + S P STL+ F PS SL+ L+ SI S S S F V
Sbjct: 14 VTSQTPSSLKPNSTLSFFSLPS---------SSLNLSLSSSSIGHSASIKPFESSFSTRV 64
Query: 198 AVTDDFSVEEEDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMV 377
A++D +E DD ++ FS DLKLFVGNLPF VDSA LA LFE AGNVE+V
Sbjct: 65 ALSDFDQLE-------DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIV 117
Query: 378 EVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF--- 548
EVIYDK++GRSRGFGFVTMS+ EVEAAEQQFNGYE+DGRA+RVNAGP P KRE+S
Sbjct: 118 EVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGG 177
Query: 549 SRGPRSSFG---SSGSGYGGG-GGWWCWFRNRVYVGNLSWGVDDMALE 680
RG SS+G S +GG GG NRVYVGNLSWGVDD+AL+
Sbjct: 178 GRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALK 225
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 280
Score = 196 bits (498), Expect = 2e-048
Identities = 121/196 (61%), Positives = 139/196 (70%), Gaps = 20/196 (10%)
Frame = +3
Query: 33 ASASSLASP---PSTLNPFLSPSRPASTPF----LPPSLSFKLNHQSISLS---VSAASR 182
ASASSL P P TL+ +P++P S F P S+ L + L S++SR
Sbjct: 4 ASASSLVLPSLNPKTLS-LCNPNKPISLSFKLHAKPISIPSSLFSSFVPLQQQPYSSSSR 62
Query: 183 FVRNVAVTDDFSVEEEDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAG 362
FV +VA++ +F EE+ V SD E SFS DLKLFVGNLPF+VDSAQLA LFESAG
Sbjct: 63 FVPSVAISSEFGQEED--VSSDG----DESSFSQDLKLFVGNLPFNVDSAQLAGLFESAG 116
Query: 363 NVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRED 542
NVEMVEVIYDKVTGRSRGFGFVTMSS+ EVEAA QQFNGYEL+GRALRVN+G PPP+RE
Sbjct: 117 NVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSG-PPPQRES 175
Query: 543 SFSRGPRSSFGSSGSG 590
SFSR PR FG G G
Sbjct: 176 SFSRSPR--FGGGGGG 189
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 193 bits (490), Expect = 2e-047
Identities = 113/211 (53%), Positives = 141/211 (66%), Gaps = 15/211 (7%)
Frame = +3
Query: 84 SPSRPASTPFLPPSLSFK-LNHQSISL--SVSAASRFVRNVAVTDDFSVEEEDGVFSDDA 254
SP +S P L + +FK + S+SL S+S + RF+ VAV+ +F EE+ DD
Sbjct: 18 SPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDT 77
Query: 255 PQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 434
P S+S + +LFVG+LPF VDSAQLA++FE+AG+VEMVEVIYDK TGRSRGFGFVTM
Sbjct: 78 P-----SYSPNQRLFVGSLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTM 132
Query: 435 SSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSRGPRSSFGSS---GSGYGGGG 605
SS +EVEAA QQ NGY +DGR LRVNAGPPPP R ++ G FG G GG
Sbjct: 133 SSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSS 192
Query: 606 GWWCWFRNRVYVGNLSWGVDDMALESCSGSR 698
NRV+VGNL+WGVD++ALES G +
Sbjct: 193 DG----DNRVHVGNLAWGVDNLALESLFGEQ 219
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
Length = 268
Score = 188 bits (476), Expect = 8e-046
Identities = 108/201 (53%), Positives = 133/201 (66%), Gaps = 22/201 (10%)
Frame = +3
Query: 87 PSRPASTPFLPPSLSFKLNHQSISLSVSAASRFVRNVAVTDDFSVE--EEDGVFSDDAPQ 260
P+ PA+T FLP F+L +++S V VAV+ ++ E E++G +
Sbjct: 22 PAAPAATAFLP----FRLPPRAVSAPGRRVFEPVA-VAVSSEYKTEGAEQEG-------E 69
Query: 261 QQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSS 440
+ FS DLKLFVGNLPF VDSAQLA LFE AG+VEMVEV+YD++TGRSRGFGFVTMSS
Sbjct: 70 DGSEEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSS 129
Query: 441 VSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSRGPRSSFGSSGSGYGGGGGWWCW 620
E EAA +QFNGY GR LRVN GPPPP R++S R PR G GGGGG +
Sbjct: 130 AEEAEAAVEQFNGYAFQGRQLRVNCGPPPP-RDESTPRAPR-------GGGGGGGGGFVD 181
Query: 621 FRNRVYVGNLSWGVDDMALES 683
N+VYVGNL+WGVD+ LE+
Sbjct: 182 SANKVYVGNLAWGVDNSTLEN 202
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260
[Sorghum bicolor]
Length = 268
Score = 187 bits (473), Expect = 2e-045
Identities = 110/204 (53%), Positives = 133/204 (65%), Gaps = 28/204 (13%)
Frame = +3
Query: 87 PSRPASTPFLPPSLSFKLNHQSISLSVSAASRFVRN---VAVTDDFSVEEEDGVFSDDAP 257
P+ PA++ FLP L + +VSA R V VAV+ ++ E A
Sbjct: 22 PAAPAASAFLPFRLPLR--------AVSAPGRRVFEPVAVAVSSEYETE--------GAE 65
Query: 258 QQQE--QSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 431
Q++E + FS DLKLFVGNLPF VDSAQLA LFE AG+VEMVEV+YD++TGRSRGFGFVT
Sbjct: 66 QEEEGAEEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVT 125
Query: 432 MSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSRGPRSSFGSSGSGYGGGGGW 611
MSS E AA +QFNGY GR LRVN GPPPP R++S R PR G G GGGGG
Sbjct: 126 MSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPP-RDESAPRAPR------GGGGGGGGGS 178
Query: 612 WCWFRNRVYVGNLSWGVDDMALES 683
+ N+VYVGNL+WGVD+ LE+
Sbjct: 179 FVDSANKVYVGNLAWGVDNSTLEN 202
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,
chloroplastic; AltName: Full=CP29A; Flags: Precursor
Length = 273
Score = 186 bits (471), Expect = 3e-045
Identities = 118/203 (58%), Positives = 135/203 (66%), Gaps = 16/203 (7%)
Frame = +3
Query: 30 AASASS---LASPPSTLNPFLSPSRPASTPF--LPPSLSFKLNHQSISLSVSAASRFVRN 194
A+SASS L+ P TL S+ S F LPPS LN S S +SRFVR
Sbjct: 2 ASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPS---SLNLSLSSSSSCFSSRFVRK 58
Query: 195 VAVTDDFSVEE-EDGVFSDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVE 371
V ++D +E+ EDG D ++E++FS DLK+FVGNLPF DSA LA+LFE AGNVE
Sbjct: 59 VTLSDFDQIEDVEDG----DDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVE 114
Query: 372 MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFS 551
MVEVIYDK+TGRSRGFGFVTMSS EVEAA QQFNGYELDGRALRVN+GPPP KRE+S
Sbjct: 115 MVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF 174
Query: 552 RGPR---SSFGSSGSGYGGGGGW 611
RG SF SS Y G W
Sbjct: 175 RGGSRGGGSFDSSNRVYVGNLAW 197
>gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 175 bits (443), Expect = 6e-042
Identities = 107/194 (55%), Positives = 129/194 (66%), Gaps = 11/194 (5%)
Frame = +3
Query: 27 MAASASSLASPPSTL---NPFLSPSRPASTPFLPP-SLSFKLNHQSISLSVSAASRFVRN 194
M+ SA+SLA P TL P SP +S+ L P S ++ + ++S++S +
Sbjct: 1 MSTSAASLALPTLTLRTRQPLCSPQCFSSSLSLTPNSKPISISAVFLKTTLSSSSPLSLS 60
Query: 195 VAVTDDFSV-EEEDGVFSD-DAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 368
SV E+E+ F D D P SFS DLKLFVGNLPF VDSA+LA+LFESAGNV
Sbjct: 61 SRFVPHVSVLEQEEDTFGDGDGP-----SFSRDLKLFVGNLPFSVDSARLAELFESAGNV 115
Query: 369 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF 548
E+VEVIYDK TGRSRGFGFVTMSSV E EAA +QFNGYELDGR+LRVN+GPPP + E +
Sbjct: 116 EVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPARNESAP 175
Query: 549 SRGPRSSFGSSGSG 590
SSFGS G G
Sbjct: 176 RFRGGSSFGSRGGG 189
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 268
Score = 172 bits (435), Expect = 5e-041
Identities = 94/147 (63%), Positives = 106/147 (72%), Gaps = 8/147 (5%)
Frame = +3
Query: 243 SDDAPQQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 422
S D + + FS DL++FVGNLPF VDSAQLA LFE AG+VEMVEVIYDK+TGRSRGFG
Sbjct: 59 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 118
Query: 423 FVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSRGPRSSFGS--SGSGYG 596
FVTMS+V EVE A ++ NGY LDGRAL+VN+GPPPPK + S RG R G S G
Sbjct: 119 FVTMSTVEEVEEAVERLNGYVLDGRALKVNSGPPPPK-DQSSPRGFREQSGGFRQQSSRG 177
Query: 597 GGGGWWCWFRNRVYVGNLSWGVDDMAL 677
GG NRVYVGNLSW VDD AL
Sbjct: 178 PSGG-----DNRVYVGNLSWNVDDSAL 199
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,428,570,657
Number of Sequences: 15229318
Number of Extensions: 112428570657
Number of Successful Extensions: 28740549
Number of sequences better than 0.0: 0
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