BLASTX 7.6.2
Query= UN65916 /QuerySize=673
(672 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G80650.1 | Symbols: RTL1 | RTL1 (RNase three-l... 134 8e-032
TAIR9_protein||AT5G20320.1 | Symbols: DCL4, ATDCL4 | DCL4 (DICER... 83 2e-016
TAIR9_protein||AT4G00420.2 | Symbols: | double-stranded RNA-bin... 78 5e-015
TAIR9_protein||AT4G00420.1 | Symbols: | double-stranded RNA-bin... 78 5e-015
TAIR9_protein||AT4G00420.3 | Symbols: | double-stranded RNA-bin... 78 5e-015
>TAIR9_protein||AT1G80650.1 | Symbols: RTL1 | RTL1 (RNase three-like protein 1);
RNA binding / double-stranded RNA binding | chr1:30314609-30315600
FORWARD
Length = 199
Score = 134 bits (335), Expect = 8e-032
Identities = 62/77 (80%), Positives = 69/77 (89%), Gaps = 2/77 (2%)
Frame = +1
Query: 448 DESK--KGSAKMVLQELCISKRWKPPVYDCCNVDGPCHMRLFTYKVVVEIRDSSGTTVLE 621
DESK +GSAK VL E+C SKRW+PPVY+CCNVDGPCH+RLFTYKV+VEIRDSSG TVLE
Sbjct: 106 DESKTRRGSAKSVLHEMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLE 165
Query: 622 CFGDLKRTKKAAAEHAA 672
CFGD +R KKAAAEHAA
Sbjct: 166 CFGDPRRKKKAAAEHAA 182
Score = 87 bits (214), Expect = 8e-018
Identities = 53/106 (50%), Positives = 67/106 (63%), Gaps = 9/106 (8%)
Frame = +3
Query: 30 EDQESKRNTSRRRRSVIISLKDIPPLNPSSIPTRNSSLKPRTMMVPSTYNKVNEV---EE 200
EDQE+KR T + RS+IISLKDIPPL+PSSIP+ + + + + + EE
Sbjct: 2 EDQETKRITKKPSRSIIISLKDIPPLDPSSIPSMKPMAQDHHNVGMQRFQEKTDFKFEEE 61
Query: 201 GNAISSFSNIQIDPNSTRSVNTTTQETQLLTKPQEE---DAKSVSK 329
NAISSFSNIQIDPNSTRS++ E +L KP EE K +SK
Sbjct: 62 DNAISSFSNIQIDPNSTRSISL---EKKLAPKPDEEHTTTTKPISK 104
>TAIR9_protein||AT5G20320.1 | Symbols: DCL4, ATDCL4 | DCL4 (DICER-LIKE 4); RNA
binding / protein binding / ribonuclease III | chr5:6859571-6869068
REVERSE
Length = 1703
Score = 83 bits (203), Expect = 2e-016
Identities = 34/69 (49%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +1
Query: 466 SAKMVLQELCISKRWKPPVYDCCNVDGPCHMRLFTYKVVVEIRDSSGTTVLECFGDLKRT 645
+AK +L E C++ WKPP ++CC +GP H++ F YKV++E+ D+ T LEC+G+ + T
Sbjct: 1621 TAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMT-LECYGEARAT 1679
Query: 646 KKAAAEHAA 672
KK AAEHAA
Sbjct: 1680 KKGAAEHAA 1688
>TAIR9_protein||AT4G00420.2 | Symbols: | double-stranded RNA-binding domain
(DsRBD)-containing protein | chr4:181518-182629 REVERSE
Length = 191
Score = 78 bits (190), Expect = 5e-015
Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +1
Query: 448 DESKKGSAKMVLQELCISKRWKPPVYDCCNVDGPCHMRLFTYKVVVEIRDSSGTTVLECF 627
+E+++ SAK L LC + WK P+Y+ +GPCHM++FT KV VE+++ S TVLECF
Sbjct: 78 EETQRSSAKSQLYNLCSVRHWKAPLYEYI-AEGPCHMKIFTGKVTVEMKEDSRITVLECF 136
Query: 628 GDLKRTKKAAAEHAA 672
G+ + KK AAE AA
Sbjct: 137 GNPQYKKKIAAEQAA 151
>TAIR9_protein||AT4G00420.1 | Symbols: | double-stranded RNA-binding domain
(DsRBD)-containing protein | chr4:181518-182629 REVERSE
Length = 190
Score = 78 bits (190), Expect = 5e-015
Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +1
Query: 448 DESKKGSAKMVLQELCISKRWKPPVYDCCNVDGPCHMRLFTYKVVVEIRDSSGTTVLECF 627
+E+++ SAK L LC + WK P+Y+ +GPCHM++FT KV VE+++ S TVLECF
Sbjct: 77 EETQRSSAKSQLYNLCSVRHWKAPLYEYI-AEGPCHMKIFTGKVTVEMKEDSRITVLECF 135
Query: 628 GDLKRTKKAAAEHAA 672
G+ + KK AAE AA
Sbjct: 136 GNPQYKKKIAAEQAA 150
>TAIR9_protein||AT4G00420.3 | Symbols: | double-stranded RNA-binding domain
(DsRBD)-containing protein | chr4:181518-182408 REVERSE
Length = 169
Score = 78 bits (190), Expect = 5e-015
Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +1
Query: 448 DESKKGSAKMVLQELCISKRWKPPVYDCCNVDGPCHMRLFTYKVVVEIRDSSGTTVLECF 627
+E+++ SAK L LC + WK P+Y+ +GPCHM++FT KV VE+++ S TVLECF
Sbjct: 56 EETQRSSAKSQLYNLCSVRHWKAPLYEYI-AEGPCHMKIFTGKVTVEMKEDSRITVLECF 114
Query: 628 GDLKRTKKAAAEHAA 672
G+ + KK AAE AA
Sbjct: 115 GNPQYKKKIAAEQAA 129
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,409,931,192
Number of Sequences: 33410
Number of Extensions: 29409931192
Number of Successful Extensions: 974766586
Number of sequences better than 0.0: 0
|