BLASTX 7.6.2
Query= UN65959 /QuerySize=650
(649 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G20380.2 | Symbols: LSD1 | zinc finger protein... 262 2e-070
TAIR9_protein||AT4G20380.7 | Symbols: LSD1 | zinc finger protein... 262 2e-070
TAIR9_protein||AT4G20380.1 | Symbols: LSD1 | zinc finger protein... 259 1e-069
TAIR9_protein||AT4G20380.3 | Symbols: LSD1 | zinc finger protein... 259 1e-069
TAIR9_protein||AT4G20380.4 | Symbols: LSD1 | zinc finger protein... 259 1e-069
TAIR9_protein||AT4G20380.5 | Symbols: LSD1 | zinc finger protein... 259 1e-069
TAIR9_protein||AT4G20380.6 | Symbols: LSD1 | zinc finger protein... 259 1e-069
TAIR9_protein||AT4G20380.8 | Symbols: | zinc finger protein (LS... 123 1e-028
>TAIR9_protein||AT4G20380.2 | Symbols: LSD1 | zinc finger protein (LSD1) |
chr4:11005012-11006438 FORWARD
Length = 190
Score = 262 bits (667), Expect = 2e-070
Identities = 130/169 (76%), Positives = 139/169 (82%), Gaps = 20/169 (11%)
Frame = +3
Query: 159 DMQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPPPPPHHHAAHAGMDMAHIVCG 338
DMQDQLVCHGCRN LMYPRGA+NVRCALC+ +NMVP PPPPPH DMAHI+CG
Sbjct: 5 DMQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP--PPPPPH--------DMAHIICG 54
Query: 339 GCRTMLMYTRGATSVRCSCCQTVNLVP------GPPPSNQVAHINCGNCRTTLMYPYGAS 500
GCRTMLMYTRGA+SVRCSCCQT NLVP PS+QVA INCG+CRTTLMYPYGAS
Sbjct: 55 GCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGAS 114
Query: 501 SVKCAICQFVTNVNMSNGRVSLASNRPNGTASPGTMPSTSTQSTPPSQT 647
SVKCA+CQFVTNVNMSNGRV L +NRPNGTA P PSTST STPPSQT
Sbjct: 115 SVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACP---PSTST-STPPSQT 159
>TAIR9_protein||AT4G20380.7 | Symbols: LSD1 | zinc finger protein (LSD1) |
chr4:11005012-11006438 FORWARD
Length = 190
Score = 262 bits (667), Expect = 2e-070
Identities = 130/169 (76%), Positives = 139/169 (82%), Gaps = 20/169 (11%)
Frame = +3
Query: 159 DMQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPPPPPHHHAAHAGMDMAHIVCG 338
DMQDQLVCHGCRN LMYPRGA+NVRCALC+ +NMVP PPPPPH DMAHI+CG
Sbjct: 5 DMQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP--PPPPPH--------DMAHIICG 54
Query: 339 GCRTMLMYTRGATSVRCSCCQTVNLVP------GPPPSNQVAHINCGNCRTTLMYPYGAS 500
GCRTMLMYTRGA+SVRCSCCQT NLVP PS+QVA INCG+CRTTLMYPYGAS
Sbjct: 55 GCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGAS 114
Query: 501 SVKCAICQFVTNVNMSNGRVSLASNRPNGTASPGTMPSTSTQSTPPSQT 647
SVKCA+CQFVTNVNMSNGRV L +NRPNGTA P PSTST STPPSQT
Sbjct: 115 SVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACP---PSTST-STPPSQT 159
>TAIR9_protein||AT4G20380.1 | Symbols: LSD1 | zinc finger protein (LSD1) |
chr4:11005027-11006438 FORWARD
Length = 185
Score = 259 bits (661), Expect = 1e-069
Identities = 129/168 (76%), Positives = 138/168 (82%), Gaps = 20/168 (11%)
Frame = +3
Query: 162 MQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPPPPPHHHAAHAGMDMAHIVCGG 341
MQDQLVCHGCRN LMYPRGA+NVRCALC+ +NMVP PPPPPH DMAHI+CGG
Sbjct: 1 MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP--PPPPPH--------DMAHIICGG 50
Query: 342 CRTMLMYTRGATSVRCSCCQTVNLVP------GPPPSNQVAHINCGNCRTTLMYPYGASS 503
CRTMLMYTRGA+SVRCSCCQT NLVP PS+QVA INCG+CRTTLMYPYGASS
Sbjct: 51 CRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASS 110
Query: 504 VKCAICQFVTNVNMSNGRVSLASNRPNGTASPGTMPSTSTQSTPPSQT 647
VKCA+CQFVTNVNMSNGRV L +NRPNGTA P PSTST STPPSQT
Sbjct: 111 VKCAVCQFVTNVNMSNGRVPLPTNRPNGTACP---PSTST-STPPSQT 154
>TAIR9_protein||AT4G20380.3 | Symbols: LSD1 | zinc finger protein (LSD1) |
chr4:11005027-11006438 FORWARD
Length = 185
Score = 259 bits (661), Expect = 1e-069
Identities = 129/168 (76%), Positives = 138/168 (82%), Gaps = 20/168 (11%)
Frame = +3
Query: 162 MQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPPPPPHHHAAHAGMDMAHIVCGG 341
MQDQLVCHGCRN LMYPRGA+NVRCALC+ +NMVP PPPPPH DMAHI+CGG
Sbjct: 1 MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP--PPPPPH--------DMAHIICGG 50
Query: 342 CRTMLMYTRGATSVRCSCCQTVNLVP------GPPPSNQVAHINCGNCRTTLMYPYGASS 503
CRTMLMYTRGA+SVRCSCCQT NLVP PS+QVA INCG+CRTTLMYPYGASS
Sbjct: 51 CRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASS 110
Query: 504 VKCAICQFVTNVNMSNGRVSLASNRPNGTASPGTMPSTSTQSTPPSQT 647
VKCA+CQFVTNVNMSNGRV L +NRPNGTA P PSTST STPPSQT
Sbjct: 111 VKCAVCQFVTNVNMSNGRVPLPTNRPNGTACP---PSTST-STPPSQT 154
>TAIR9_protein||AT4G20380.4 | Symbols: LSD1 | zinc finger protein (LSD1) |
chr4:11005027-11006438 FORWARD
Length = 185
Score = 259 bits (661), Expect = 1e-069
Identities = 129/168 (76%), Positives = 138/168 (82%), Gaps = 20/168 (11%)
Frame = +3
Query: 162 MQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPPPPPHHHAAHAGMDMAHIVCGG 341
MQDQLVCHGCRN LMYPRGA+NVRCALC+ +NMVP PPPPPH DMAHI+CGG
Sbjct: 1 MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP--PPPPPH--------DMAHIICGG 50
Query: 342 CRTMLMYTRGATSVRCSCCQTVNLVP------GPPPSNQVAHINCGNCRTTLMYPYGASS 503
CRTMLMYTRGA+SVRCSCCQT NLVP PS+QVA INCG+CRTTLMYPYGASS
Sbjct: 51 CRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASS 110
Query: 504 VKCAICQFVTNVNMSNGRVSLASNRPNGTASPGTMPSTSTQSTPPSQT 647
VKCA+CQFVTNVNMSNGRV L +NRPNGTA P PSTST STPPSQT
Sbjct: 111 VKCAVCQFVTNVNMSNGRVPLPTNRPNGTACP---PSTST-STPPSQT 154
>TAIR9_protein||AT4G20380.5 | Symbols: LSD1 | zinc finger protein (LSD1) |
chr4:11005027-11006438 FORWARD
Length = 185
Score = 259 bits (661), Expect = 1e-069
Identities = 129/168 (76%), Positives = 138/168 (82%), Gaps = 20/168 (11%)
Frame = +3
Query: 162 MQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPPPPPHHHAAHAGMDMAHIVCGG 341
MQDQLVCHGCRN LMYPRGA+NVRCALC+ +NMVP PPPPPH DMAHI+CGG
Sbjct: 1 MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP--PPPPPH--------DMAHIICGG 50
Query: 342 CRTMLMYTRGATSVRCSCCQTVNLVP------GPPPSNQVAHINCGNCRTTLMYPYGASS 503
CRTMLMYTRGA+SVRCSCCQT NLVP PS+QVA INCG+CRTTLMYPYGASS
Sbjct: 51 CRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASS 110
Query: 504 VKCAICQFVTNVNMSNGRVSLASNRPNGTASPGTMPSTSTQSTPPSQT 647
VKCA+CQFVTNVNMSNGRV L +NRPNGTA P PSTST STPPSQT
Sbjct: 111 VKCAVCQFVTNVNMSNGRVPLPTNRPNGTACP---PSTST-STPPSQT 154
>TAIR9_protein||AT4G20380.6 | Symbols: LSD1 | zinc finger protein (LSD1) |
chr4:11005027-11006438 FORWARD
Length = 185
Score = 259 bits (661), Expect = 1e-069
Identities = 129/168 (76%), Positives = 138/168 (82%), Gaps = 20/168 (11%)
Frame = +3
Query: 162 MQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPPPPPHHHAAHAGMDMAHIVCGG 341
MQDQLVCHGCRN LMYPRGA+NVRCALC+ +NMVP PPPPPH DMAHI+CGG
Sbjct: 1 MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP--PPPPPH--------DMAHIICGG 50
Query: 342 CRTMLMYTRGATSVRCSCCQTVNLVP------GPPPSNQVAHINCGNCRTTLMYPYGASS 503
CRTMLMYTRGA+SVRCSCCQT NLVP PS+QVA INCG+CRTTLMYPYGASS
Sbjct: 51 CRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASS 110
Query: 504 VKCAICQFVTNVNMSNGRVSLASNRPNGTASPGTMPSTSTQSTPPSQT 647
VKCA+CQFVTNVNMSNGRV L +NRPNGTA P PSTST STPPSQT
Sbjct: 111 VKCAVCQFVTNVNMSNGRVPLPTNRPNGTACP---PSTST-STPPSQT 154
>TAIR9_protein||AT4G20380.8 | Symbols: | zinc finger protein (LSD1) |
chr4:11005027-11006438 FORWARD
Length = 211
Score = 123 bits (307), Expect = 1e-028
Identities = 61/73 (83%), Positives = 65/73 (89%), Gaps = 4/73 (5%)
Frame = +3
Query: 429 PSNQVAHINCGNCRTTLMYPYGASSVKCAICQFVTNVNMSNGRVSLASNRPNGTASPGTM 608
PS+QVA INCG+CRTTLMYPYGASSVKCA+CQFVTNVNMSNGRV L +NRPNGTA P
Sbjct: 112 PSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACP--- 168
Query: 609 PSTSTQSTPPSQT 647
PSTST STPPSQT
Sbjct: 169 PSTST-STPPSQT 180
Score = 100 bits (247), Expect = 1e-021
Identities = 41/66 (62%), Positives = 52/66 (78%)
Frame = +3
Query: 327 IVCGGCRTMLMYTRGATSVRCSCCQTVNLVPGPPPSNQVAHINCGNCRTTLMYPYGASSV 506
+VC GCR +LMY RGA++VRC+ C T+N+VP PPP + +AHI CG CRT LMY GASSV
Sbjct: 5 LVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASSV 64
Query: 507 KCAICQ 524
+C+ CQ
Sbjct: 65 RCSCCQ 70
Score = 84 bits (207), Expect = 5e-017
Identities = 37/46 (80%), Positives = 40/46 (86%), Gaps = 2/46 (4%)
Frame = +3
Query: 162 MQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPPPPPHHHA 299
MQDQLVCHGCRN LMYPRGA+NVRCALC+ +NMVP PPPPPH A
Sbjct: 1 MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVP--PPPPPHDMA 44
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,409,931,192
Number of Sequences: 33410
Number of Extensions: 29409931192
Number of Successful Extensions: 974766586
Number of sequences better than 0.0: 0
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