BLASTX 7.6.2
Query= UN66999 /QuerySize=822
(821 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297793573|ref|XP_002864671.1| hypothetical protein ARALYDRAFT... 326 3e-087
gi|297819084|ref|XP_002877425.1| RNA recognition motif-containin... 212 6e-053
gi|15231193|ref|NP_190149.1| CCR4-NOT transcription complex subu... 196 4e-048
gi|8885568|dbj|BAA97498.1| general negative transcription regula... 163 3e-038
gi|110737331|dbj|BAF00611.1| hypothetical protein [Arabidopsis t... 163 3e-038
gi|145359475|ref|NP_200825.2| RNA binding (RRM/RBD/RNP motifs) f... 163 3e-038
gi|334188516|ref|NP_001190578.1| RNA binding (RRM/RBD/RNP motifs... 163 3e-038
>gi|297793573|ref|XP_002864671.1| hypothetical protein ARALYDRAFT_358235
[Arabidopsis lyrata subsp. lyrata]
Length = 1001
Score = 326 bits (834), Expect = 3e-087
Identities = 180/266 (67%), Positives = 203/266 (76%), Gaps = 10/266 (3%)
Frame = +1
Query: 4 MEITTSLRDERPDMAMAIGSKCDPGSIRQPGHEVSTSSHLEQCRVDSA-NTDEKAIRSET 180
M IT + RDERPD+ MAIGS+CD GSIRQPGHEVS HLEQCR++S+ +TD+KAI E
Sbjct: 463 MGITVNCRDERPDITMAIGSQCDQGSIRQPGHEVSKLPHLEQCRMNSSIDTDKKAIPLED 522
Query: 181 EVPYTKPEWDWRSDLQSQMQVSSKWDVEDKSSLDSQRHHPEEDIILSRFLSNSSSSILNS 360
VP T+PEWDWRSDLQSQMQ SSK E+ S DSQRHHPEEDII SRFL N SSS L++
Sbjct: 523 RVPRTRPEWDWRSDLQSQMQGSSKLQEEEILSFDSQRHHPEEDIIHSRFLCNLSSSSLDT 582
Query: 361 NRLASSSSCSLPSEHSGVNDSNLRFSSD--SDRLHLPNGYGEKSMFSVEHSLFANDGRNK 534
N +AS S SLP E +GVNDSNLR S D SDRLHLPNG+GE+SM SVEHSLFAN+ RNK
Sbjct: 583 NHMASRS--SLPCEIAGVNDSNLRSSLDSGSDRLHLPNGFGERSMSSVEHSLFANEDRNK 640
Query: 535 VRNGEDDKIPNILGLDFDPWDE---SPNNLAELLGEVDQRSSSTLKPGNLLKQHNSQSRF 705
V N ED + NIL LDFDPWDE SP+NLAELLGEVDQR SSTLKP NLLKQHN+QSRF
Sbjct: 641 VNNAEDPILSNILSLDFDPWDESLTSPHNLAELLGEVDQR-SSTLKPSNLLKQHNNQSRF 699
Query: 706 SLPDMKNLVIKHLIGD-HSIYGQFQR 780
S + + + HSIYGQ R
Sbjct: 700 SFARYEESSNQAYDSENHSIYGQLSR 725
>gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 989
Score = 212 bits (539), Expect = 6e-053
Identities = 130/268 (48%), Positives = 173/268 (64%), Gaps = 19/268 (7%)
Frame = +1
Query: 4 MEITTSLRDERPDMAMAIGSKCDPGSIRQPGHEVSTSSHLEQCRVDSANTD-EKAIRSET 180
M IT++ RDE P + +AIG+ CD GSIRQP ++V +LE+CR DS T +A S+
Sbjct: 452 MGITSNSRDEAPGVPVAIGTHCDQGSIRQPDNDV---QNLERCRKDSPTTTYAEAGISQN 508
Query: 181 EVPYTKPEWDWRSDLQSQMQVSSKWDVEDKSSLDSQRHHPEEDIILSRFLSNSSSSILNS 360
+ ++PEWDWRS +SQ+ V ++ DV D SS ++ R E + S ++ +SSSSIL+S
Sbjct: 509 GIHGSRPEWDWRSGSRSQIDVKAQVDVNDSSSFNNNRRDVAEAVSHSTYMFSSSSSILDS 568
Query: 361 NRLASSSSCSLPSEHSGVNDSNLR--FSSDSDRLHLPNGYGEKSMFSVEHSLFANDGRNK 534
N LAS S + E SG DSN F SD LHLPNG+ EK++ ++EHSLFAN+GR+
Sbjct: 569 NHLASRSFQT--RETSGRMDSNTESTFEIGSDSLHLPNGFSEKAISNMEHSLFANEGRSN 626
Query: 535 VRNGEDDKIPNILGLDFDPWDE---SPNNLAELLGEVDQRSSSTLKPGNLLKQHNSQSRF 705
++N EDD I NI LDFDPWDE SP+N A+LLG+ D S+STL+ NLLKQHN QSRF
Sbjct: 627 IQNAEDDIISNI--LDFDPWDESLTSPHNFAKLLGQSD-HSASTLESSNLLKQHNDQSRF 683
Query: 706 SL---PDMKNLVIKHLIGDHSIYGQFQR 780
S + N + +SIYGQ R
Sbjct: 684 SFARHEESNNQA--YYNKSYSIYGQLSR 709
>gi|15231193|ref|NP_190149.1| CCR4-NOT transcription complex subunit 4
[Arabidopsis thaliana]
Length = 989
Score = 196 bits (497), Expect = 4e-048
Identities = 123/264 (46%), Positives = 161/264 (60%), Gaps = 11/264 (4%)
Frame = +1
Query: 4 MEITTSLRDERPDMAMAIGSKCDPGSIRQPGHEVSTSSHLEQCRVDS-ANTDEKAIRSET 180
M ITT+ RDE P + + IG+ CD GSI Q ++V +LEQCR S NT +A S
Sbjct: 452 MGITTNSRDETPGVPVVIGTHCDLGSITQSDNDV---QNLEQCRKQSPTNTYAEADISLN 508
Query: 181 EVPYTKPEWDWRSDLQSQMQVSSKWDVEDKSSLDSQRHHPEEDIILSRFLSNSSSSILNS 360
+ ++PEWDWRS LQSQ+ V +V D SS ++ R E + S +SS SIL+S
Sbjct: 509 GIHGSRPEWDWRSGLQSQIDVKEPLEVNDFSSFNNNRRGIAEAVSHSTSKFSSSISILDS 568
Query: 361 NRLASSSSCSLPSEHSGVNDSNLRFSSDSDRLHLPNGYGEKSMFSVEHSLFANDGRNKVR 540
N LAS S + + + + F SDRLHLPNG+ EK+M ++EHSLFAN+GR+ ++
Sbjct: 569 NHLASRSFQNRETSCGMDSKTGSSFEIGSDRLHLPNGFSEKAMSNMEHSLFANEGRSNIQ 628
Query: 541 NGEDDKIPNILGLDFDPWDE---SPNNLAELLGEVDQRSSSTLKPGNLLKQHNSQSRFSL 711
N EDD I NI LDFDPWDE S +N A+LLG+ D R +STL+ NLLKQHN QSRFS
Sbjct: 629 NTEDDIISNI--LDFDPWDESLTSQHNFAKLLGQSDHR-ASTLESSNLLKQHNDQSRFSF 685
Query: 712 PDMKNLVIKHLIG-DHSIYGQFQR 780
+ + +SIYGQ R
Sbjct: 686 ARHEESNSQAYDNRSYSIYGQLSR 709
>gi|8885568|dbj|BAA97498.1| general negative transcription regulator-like
[Arabidopsis thaliana]
Length = 989
Score = 163 bits (412), Expect = 3e-038
Identities = 90/137 (65%), Positives = 102/137 (74%), Gaps = 3/137 (2%)
Frame = +1
Query: 4 MEITTSLRDERPDMAMAIGSKCDPGSIRQPGHEVSTSSHLEQCRVDSA-NTDEKAIRSET 180
M IT + RDERPD+ MAIGS+ D GSIRQPG EVS LEQCR+DS+ NTD+KAI E
Sbjct: 465 MRITMNCRDERPDITMAIGSQSDQGSIRQPGSEVSKLPDLEQCRIDSSINTDKKAISLED 524
Query: 181 EVPYTKPEWDWRSDLQSQMQVSSKWDVEDKSSLDSQRHHPEEDIILSRFLSNSSSSILNS 360
+P T+P WDW SDLQSQMQ SSK VED S+LDSQR HPEEDII SR LSN SSS L++
Sbjct: 525 RIPRTRPGWDWISDLQSQMQGSSKLQVEDISTLDSQRPHPEEDIIHSRLLSNLSSSSLDT 584
Query: 361 NRLASSSSCSLPSEHSG 411
N +AS S SLP E G
Sbjct: 585 NHMASRS--SLPCEVRG 599
Score = 155 bits (390), Expect = 1e-035
Identities = 94/181 (51%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Frame = +1
Query: 253 WDVEDKSSLDSQRHHPEEDI-ILSRFLSNSSSSILNSNRLASSSSCSLPSEHSGVNDSNL 429
W + +S + EDI L + I++S L++ SS SL + H S
Sbjct: 535 WISDLQSQMQGSSKLQVEDISTLDSQRPHPEEDIIHSRLLSNLSSSSLDTNHMASRSSLP 594
Query: 430 RFSSDSDRLHLPNGYGEKSMFSVEHSLFANDGRNKVRNGEDDKIPNILGLDFDPWDE--- 600
SDRLHLPNG+GEKSM SVEHSLFAN+GRNKV N ED + NIL LDFDPWDE
Sbjct: 595 CEVRGSDRLHLPNGFGEKSMSSVEHSLFANEGRNKVNNAEDAILSNILSLDFDPWDESLT 654
Query: 601 SPNNLAELLGEVDQRSSSTLKPGNLLKQHNSQSRFSLPDMKNLVIKHLIGD-HSIYGQFQ 777
SP+NLAELLGEVDQR SSTLKP N LKQHN+QSRFS + + + +SIYGQ
Sbjct: 655 SPHNLAELLGEVDQR-SSTLKPSNFLKQHNNQSRFSFARYEESSNQAYDSENYSIYGQLS 713
Query: 778 R 780
R
Sbjct: 714 R 714
>gi|110737331|dbj|BAF00611.1| hypothetical protein [Arabidopsis thaliana]
Length = 1025
Score = 163 bits (412), Expect = 3e-038
Identities = 90/137 (65%), Positives = 102/137 (74%), Gaps = 3/137 (2%)
Frame = +1
Query: 4 MEITTSLRDERPDMAMAIGSKCDPGSIRQPGHEVSTSSHLEQCRVDSA-NTDEKAIRSET 180
M IT + RDERPD+ MAIGS+ D GSIRQPG EVS LEQCR+DS+ NTD+KAI E
Sbjct: 501 MRITMNCRDERPDITMAIGSQSDQGSIRQPGSEVSKLPDLEQCRIDSSINTDKKAISLED 560
Query: 181 EVPYTKPEWDWRSDLQSQMQVSSKWDVEDKSSLDSQRHHPEEDIILSRFLSNSSSSILNS 360
+P T+P WDW SDLQSQMQ SSK VED S+LDSQR HPEEDII SR LSN SSS L++
Sbjct: 561 RIPRTRPGWDWISDLQSQMQGSSKLQVEDISTLDSQRPHPEEDIIHSRLLSNLSSSSLDT 620
Query: 361 NRLASSSSCSLPSEHSG 411
N +AS S SLP E G
Sbjct: 621 NHMASRS--SLPCEVRG 635
Score = 155 bits (390), Expect = 1e-035
Identities = 94/181 (51%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Frame = +1
Query: 253 WDVEDKSSLDSQRHHPEEDI-ILSRFLSNSSSSILNSNRLASSSSCSLPSEHSGVNDSNL 429
W + +S + EDI L + I++S L++ SS SL + H S
Sbjct: 571 WISDLQSQMQGSSKLQVEDISTLDSQRPHPEEDIIHSRLLSNLSSSSLDTNHMASRSSLP 630
Query: 430 RFSSDSDRLHLPNGYGEKSMFSVEHSLFANDGRNKVRNGEDDKIPNILGLDFDPWDE--- 600
SDRLHLPNG+GEKSM SVEHSLFAN+GRNKV N ED + NIL LDFDPWDE
Sbjct: 631 CEVRGSDRLHLPNGFGEKSMSSVEHSLFANEGRNKVNNAEDAILSNILSLDFDPWDESLT 690
Query: 601 SPNNLAELLGEVDQRSSSTLKPGNLLKQHNSQSRFSLPDMKNLVIKHLIGD-HSIYGQFQ 777
SP+NLAELLGEVDQR SSTLKP N LKQHN+QSRFS + + + +SIYGQ
Sbjct: 691 SPHNLAELLGEVDQR-SSTLKPSNFLKQHNNQSRFSFARYEESSNQAYDSENYSIYGQLS 749
Query: 778 R 780
R
Sbjct: 750 R 750
>gi|145359475|ref|NP_200825.2| RNA binding (RRM/RBD/RNP motifs) family protein
[Arabidopsis thaliana]
Length = 985
Score = 163 bits (412), Expect = 3e-038
Identities = 90/137 (65%), Positives = 102/137 (74%), Gaps = 3/137 (2%)
Frame = +1
Query: 4 MEITTSLRDERPDMAMAIGSKCDPGSIRQPGHEVSTSSHLEQCRVDSA-NTDEKAIRSET 180
M IT + RDERPD+ MAIGS+ D GSIRQPG EVS LEQCR+DS+ NTD+KAI E
Sbjct: 461 MRITMNCRDERPDITMAIGSQSDQGSIRQPGSEVSKLPDLEQCRIDSSINTDKKAISLED 520
Query: 181 EVPYTKPEWDWRSDLQSQMQVSSKWDVEDKSSLDSQRHHPEEDIILSRFLSNSSSSILNS 360
+P T+P WDW SDLQSQMQ SSK VED S+LDSQR HPEEDII SR LSN SSS L++
Sbjct: 521 RIPRTRPGWDWISDLQSQMQGSSKLQVEDISTLDSQRPHPEEDIIHSRLLSNLSSSSLDT 580
Query: 361 NRLASSSSCSLPSEHSG 411
N +AS S SLP E G
Sbjct: 581 NHMASRS--SLPCEVRG 595
Score = 155 bits (390), Expect = 1e-035
Identities = 94/181 (51%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Frame = +1
Query: 253 WDVEDKSSLDSQRHHPEEDI-ILSRFLSNSSSSILNSNRLASSSSCSLPSEHSGVNDSNL 429
W + +S + EDI L + I++S L++ SS SL + H S
Sbjct: 531 WISDLQSQMQGSSKLQVEDISTLDSQRPHPEEDIIHSRLLSNLSSSSLDTNHMASRSSLP 590
Query: 430 RFSSDSDRLHLPNGYGEKSMFSVEHSLFANDGRNKVRNGEDDKIPNILGLDFDPWDE--- 600
SDRLHLPNG+GEKSM SVEHSLFAN+GRNKV N ED + NIL LDFDPWDE
Sbjct: 591 CEVRGSDRLHLPNGFGEKSMSSVEHSLFANEGRNKVNNAEDAILSNILSLDFDPWDESLT 650
Query: 601 SPNNLAELLGEVDQRSSSTLKPGNLLKQHNSQSRFSLPDMKNLVIKHLIGD-HSIYGQFQ 777
SP+NLAELLGEVDQR SSTLKP N LKQHN+QSRFS + + + +SIYGQ
Sbjct: 651 SPHNLAELLGEVDQR-SSTLKPSNFLKQHNNQSRFSFARYEESSNQAYDSENYSIYGQLS 709
Query: 778 R 780
R
Sbjct: 710 R 710
>gi|334188516|ref|NP_001190578.1| RNA binding (RRM/RBD/RNP motifs) family
protein [Arabidopsis thaliana]
Length = 987
Score = 163 bits (412), Expect = 3e-038
Identities = 90/137 (65%), Positives = 102/137 (74%), Gaps = 3/137 (2%)
Frame = +1
Query: 4 MEITTSLRDERPDMAMAIGSKCDPGSIRQPGHEVSTSSHLEQCRVDSA-NTDEKAIRSET 180
M IT + RDERPD+ MAIGS+ D GSIRQPG EVS LEQCR+DS+ NTD+KAI E
Sbjct: 463 MRITMNCRDERPDITMAIGSQSDQGSIRQPGSEVSKLPDLEQCRIDSSINTDKKAISLED 522
Query: 181 EVPYTKPEWDWRSDLQSQMQVSSKWDVEDKSSLDSQRHHPEEDIILSRFLSNSSSSILNS 360
+P T+P WDW SDLQSQMQ SSK VED S+LDSQR HPEEDII SR LSN SSS L++
Sbjct: 523 RIPRTRPGWDWISDLQSQMQGSSKLQVEDISTLDSQRPHPEEDIIHSRLLSNLSSSSLDT 582
Query: 361 NRLASSSSCSLPSEHSG 411
N +AS S SLP E G
Sbjct: 583 NHMASRS--SLPCEVRG 597
Score = 155 bits (390), Expect = 1e-035
Identities = 94/181 (51%), Positives = 112/181 (61%), Gaps = 6/181 (3%)
Frame = +1
Query: 253 WDVEDKSSLDSQRHHPEEDI-ILSRFLSNSSSSILNSNRLASSSSCSLPSEHSGVNDSNL 429
W + +S + EDI L + I++S L++ SS SL + H S
Sbjct: 533 WISDLQSQMQGSSKLQVEDISTLDSQRPHPEEDIIHSRLLSNLSSSSLDTNHMASRSSLP 592
Query: 430 RFSSDSDRLHLPNGYGEKSMFSVEHSLFANDGRNKVRNGEDDKIPNILGLDFDPWDE--- 600
SDRLHLPNG+GEKSM SVEHSLFAN+GRNKV N ED + NIL LDFDPWDE
Sbjct: 593 CEVRGSDRLHLPNGFGEKSMSSVEHSLFANEGRNKVNNAEDAILSNILSLDFDPWDESLT 652
Query: 601 SPNNLAELLGEVDQRSSSTLKPGNLLKQHNSQSRFSLPDMKNLVIKHLIGD-HSIYGQFQ 777
SP+NLAELLGEVDQR SSTLKP N LKQHN+QSRFS + + + +SIYGQ
Sbjct: 653 SPHNLAELLGEVDQR-SSTLKPSNFLKQHNNQSRFSFARYEESSNQAYDSENYSIYGQLS 711
Query: 778 R 780
R
Sbjct: 712 R 712
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 298,392,280,264
Number of Sequences: 15229318
Number of Extensions: 298392280264
Number of Successful Extensions: 100301122
Number of sequences better than 0.0: 0
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