BLASTX 7.6.2
Query= UN67415 /QuerySize=647
(646 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G26665.1 | Symbols: | FUNCTIONS IN: molecular... 93 1e-019
TAIR9_protein||AT1G26665.2 | Symbols: | FUNCTIONS IN: molecular... 89 3e-018
TAIR9_protein||AT5G41910.1 | Symbols: | RNA polymerase II media... 84 6e-017
>TAIR9_protein||AT1G26665.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: RNA polymerase II mediator complex protein-related
(TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species:
Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). |
chr1:9214510-9215426 FORWARD
Length = 190
Score = 93 bits (229), Expect = 1e-019
Identities = 48/55 (87%), Positives = 51/55 (92%), Gaps = 1/55 (1%)
Frame = -2
Query: 192 KDLRKHILEELEETFPDEVDKYREIRAASAAEAKRQAQSQSVLLPNGDAKVKNEI 28
KDLRKHILEELE+ FPDEVD YREIRA+SAAEAKR AQSQSV LPNGDAKVKNE+
Sbjct: 136 KDLRKHILEELEQNFPDEVDMYREIRASSAAEAKRLAQSQSV-LPNGDAKVKNEL 189
Score = 73 bits (177), Expect = 1e-013
Identities = 40/57 (70%), Positives = 44/57 (77%), Gaps = 4/57 (7%)
Frame = -1
Query: 349 LNSLVSELNSMAKLSEKCNIQVPMEVLCLIDDGKNPDEFTS---KGCY**LHQVTKG 188
LNSLV EL++M KLSEKCNIQ+PMEVL LIDDGKNPDEFT C +QVTKG
Sbjct: 75 LNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCI-ARNQVTKG 130
Score = 69 bits (167), Expect = 2e-012
Identities = 34/47 (72%), Positives = 41/47 (87%), Gaps = 2/47 (4%)
Frame = -2
Query: 492 YQTNDGTA--TTSEDLKENLNQFINSIQKTLGLLHQLRLTVSSFTPA 358
YQTNDGT+ T ++D KENL+Q INSI+KTLG+LHQL LTV+SFTPA
Sbjct: 20 YQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPA 66
>TAIR9_protein||AT1G26665.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: RNA polymerase II mediator complex protein-related
(TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species:
Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). |
chr1:9214510-9215426 FORWARD
Length = 190
Score = 89 bits (218), Expect = 3e-018
Identities = 46/55 (83%), Positives = 49/55 (89%), Gaps = 1/55 (1%)
Frame = -2
Query: 192 KDLRKHILEELEETFPDEVDKYREIRAASAAEAKRQAQSQSVLLPNGDAKVKNEI 28
KDLRKHILEELE+ FPDEVD YREIRA+SAA KR AQSQSV LPNGDAKVKNE+
Sbjct: 136 KDLRKHILEELEQNFPDEVDMYREIRASSAAVTKRLAQSQSV-LPNGDAKVKNEL 189
Score = 73 bits (177), Expect = 1e-013
Identities = 40/57 (70%), Positives = 44/57 (77%), Gaps = 4/57 (7%)
Frame = -1
Query: 349 LNSLVSELNSMAKLSEKCNIQVPMEVLCLIDDGKNPDEFTS---KGCY**LHQVTKG 188
LNSLV EL++M KLSEKCNIQ+PMEVL LIDDGKNPDEFT C +QVTKG
Sbjct: 75 LNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCI-ARNQVTKG 130
Score = 69 bits (167), Expect = 2e-012
Identities = 34/47 (72%), Positives = 41/47 (87%), Gaps = 2/47 (4%)
Frame = -2
Query: 492 YQTNDGTA--TTSEDLKENLNQFINSIQKTLGLLHQLRLTVSSFTPA 358
YQTNDGT+ T ++D KENL+Q INSI+KTLG+LHQL LTV+SFTPA
Sbjct: 20 YQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPA 66
>TAIR9_protein||AT5G41910.1 | Symbols: | RNA polymerase II mediator complex
protein-related | chr5:16778160-16779032 REVERSE
Length = 187
Score = 84 bits (206), Expect = 6e-017
Identities = 42/55 (76%), Positives = 50/55 (90%), Gaps = 1/55 (1%)
Frame = -2
Query: 192 KDLRKHILEELEETFPDEVDKYREIRAASAAEAKRQAQSQSVLLPNGDAKVKNEI 28
K LRKH+LEELE+ FPDEVD+YR+IRA+ AAEAKR AQ+QSV LPNGDAKVK+E+
Sbjct: 133 KGLRKHLLEELEQAFPDEVDRYRDIRASYAAEAKRLAQTQSV-LPNGDAKVKSEL 186
Score = 76 bits (186), Expect = 1e-014
Identities = 48/83 (57%), Positives = 55/83 (66%), Gaps = 7/83 (8%)
Frame = -1
Query: 403 TPSSVTPYCFFFHTCLFSLNSLVSELNSMAKLSEKCNIQVPMEVLCLIDDGKNPDEFT-- 230
T SS TP L LNSLV EL++MAKLS+KCNIQVP+EVL LIDDGKNPDEFT
Sbjct: 55 TVSSFTPASQLH--LLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKD 112
Query: 229 --SKGCY**LHQVTKGFEKTYSG 167
+K C +QVTKG + G
Sbjct: 113 VLNKNCI-AKNQVTKGKSDAFKG 134
Score = 52 bits (123), Expect = 3e-007
Identities = 27/44 (61%), Positives = 30/44 (68%)
Frame = -2
Query: 489 QTNDGTATTSEDLKENLNQFINSIQKTLGLLHQLRLTVSSFTPA 358
+T T +D E LNQ INS QK L LLHQL+LTVSSFTPA
Sbjct: 19 KTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTVSSFTPA 62
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,951,124,998
Number of Sequences: 33410
Number of Extensions: 29951124998
Number of Successful Extensions: 1006090404
Number of sequences better than 0.0: 0
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