BLASTX 7.6.2
Query= UN67600 /QuerySize=605
(604 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sa... 89 1e-017
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=... 86 1e-016
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=... 86 1e-016
sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=... 85 3e-016
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=... 85 3e-016
sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=... 84 5e-016
sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharom... 82 2e-015
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=O... 80 1e-014
sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=A... 79 3e-014
sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-r... 79 3e-014
sp|Q5T200|ZC3HD_HUMAN Zinc finger CCCH domain-containing protein... 78 4e-014
sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=O... 77 6e-014
sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=A... 74 8e-013
sp|Q568R1|CCD55_DANRE Coiled-coil domain-containing protein 55 O... 67 8e-011
sp|A8WT19|CWC22_CAEBR Pre-mRNA-splicing factor CWC22 homolog OS=... 66 1e-010
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23
PE=1 SV=1
Length = 439
Score = 89 bits (220), Expect = 1e-017
Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Frame = +2
Query: 2 ESRGGSRDRERDR-RDREKSRDGDRERSSKERDRGDRER-SSKERDRSDREKSRDRERRE 175
+ R S ++ RDR R R + RD R R+S+ R G + R S+ DR +SR R+ R
Sbjct: 61 KKRSRSHNKSRDRKRSRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRR 120
Query: 176 REKERERRERRSSSRSRREEREREVVERGSRRHKDKKDEPEADPERDQRTVFAYQMPLKA 355
++ R ++ + E+ R PE ERD RTVF Q+ +
Sbjct: 121 EDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPE---ERDARTVFCMQLAARI 177
Query: 356 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG----CTINAI 472
RD+ +FFS GKVRDVR+I DRNSRRSKG+ C I ++
Sbjct: 178 RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 220
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1
SV=2
Length = 530
Score = 86 bits (212), Expect = 1e-016
Identities = 61/153 (39%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Frame = +2
Query: 8 RGGSRDRERDR-RDREKSRDGDRERSSKERDRGDRERSSKERDRSDREKSRDRERREREK 184
R S+ +ER R RDRE+ + RER +R R R S+ R R R + R R K
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRER---KRSRSKERRRSRSRSRDRRFRGRYRSPYSGPK 103
Query: 185 ERER-RERRSSSRSRREEREREVVERGSRRHKDKKDEP---EADPERDQRTVFAYQMPLK 352
R + S + R R + R+ K EP ERD RTVF Q+ +
Sbjct: 104 FNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAAR 163
Query: 353 ATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 451
RD+ EFFS GKVRDVR+I DRNSRRSKG+
Sbjct: 164 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 196
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2
SV=1
Length = 524
Score = 86 bits (212), Expect = 1e-016
Identities = 61/153 (39%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Frame = +2
Query: 8 RGGSRDRERDR-RDREKSRDGDRERSSKERDRGDRERSSKERDRSDREKSRDRERREREK 184
R S+ +ER R RDRE+ + RER +R R R S+ R R R + R R K
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRER---KRSRSKERRRSRSRSRDRRFRGRYRSPYSGPK 103
Query: 185 ERER-RERRSSSRSRREEREREVVERGSRRHKDKKDEP---EADPERDQRTVFAYQMPLK 352
R + S + R R + R+ K EP ERD RTVF Q+ +
Sbjct: 104 FNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAAR 163
Query: 353 ATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 451
RD+ EFFS GKVRDVR+I DRNSRRSKG+
Sbjct: 164 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGI 196
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1
SV=3
Length = 843
Score = 85 bits (209), Expect = 3e-016
Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 10/142 (7%)
Frame = +2
Query: 8 RGGSRDRERDRRDREKSRDGDRER-SSKERDR---GDRERS-SKERDRS-DREKSRDRER 169
R R+RER+RR+RE+ R+ +RER KER+R DR+R +KERDR DRE+ RDR+R
Sbjct: 312 RERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDR 371
Query: 170 R---EREKERERRERRSSSRSRREEREREVVERGSRRHKDKKDEPEADPERDQRTVFAYQ 340
+R K+R R +S R R ERERE ER R ++++ E E + ER++ +
Sbjct: 372 ERSSDRNKDRSRSREKSRDRERERERERE-REREREREREREREREREREREREREKDKK 430
Query: 341 MPLKATERDVYEFFSKAGKVRD 406
+ E D YE K+R+
Sbjct: 431 RDREEDEEDAYERRKLERKLRE 452
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1
SV=1
Length = 530
Score = 85 bits (209), Expect = 3e-016
Identities = 60/153 (39%), Positives = 77/153 (50%), Gaps = 8/153 (5%)
Frame = +2
Query: 8 RGGSRDRERDR-RDREKSRDGDRERSSKERDRGDRERSSKERDRSDREKSRDRERREREK 184
R S+ +ER R RDRE+ + RER +R R R S+ R R R + R R K
Sbjct: 47 RKRSKSKERKRSRDRERKKSKSRER---KRSRSKERRRSRSRSRDRRFRGRYRSPYSGPK 103
Query: 185 ERER-RERRSSSRSRREEREREVVERGSRRHKDKKDEP---EADPERDQRTVFAYQMPLK 352
R + S + R R + R+ K EP ERD RTVF Q+ +
Sbjct: 104 FNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAAR 163
Query: 353 ATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 451
RD+ EFFS GKVRDVR+I DRNSRRS+G+
Sbjct: 164 IRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGI 196
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1
SV=1
Length = 841
Score = 84 bits (207), Expect = 5e-016
Identities = 56/139 (40%), Positives = 82/139 (58%), Gaps = 8/139 (5%)
Frame = +2
Query: 8 RGGSRDRERDRRDREKSRDGDRER-SSKERDR---GDRERS-SKERDRSDREKSRDRER- 169
R R+RER+RR+RE+ R+ +RER KER+R DR+R +KERDR DRE+ RDR+R
Sbjct: 314 RERERERERERREREREREREREREKEKERERERERDRDRDRTKERDR-DRERDRDRDRE 372
Query: 170 REREKERERRERRSSSRSRREEREREVVERGSRRHKDKKDEPEADPERDQRTVFAYQMPL 349
R ++ ++R R SR R ERERE ER R ++++ E E + ER++ +
Sbjct: 373 RSSDRNKDRSRSREKSRDRERERERE-REREREREREREREREREREREREREKDKKRDR 431
Query: 350 KATERDVYEFFSKAGKVRD 406
+ E D YE K+R+
Sbjct: 432 EEDEEDAYERRKLERKLRE 450
Score = 74 bits (181), Expect = 5e-013
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Frame = +2
Query: 20 RDRERDR-RDREKSRDGDRERSSKERDRGDRERSSKERDRSDREKSRDRER-REREKERE 193
RDRERDR RDRE+S D +++RS DRER +ER+R +RE+ R+RER RERE+ERE
Sbjct: 361 RDRERDRDRDRERSSDRNKDRSRSREKSRDRER-ERERER-ERERERERERERERERERE 418
Query: 194 R-RERRSSSRSRREEREREVVERGSRRHKDKKDE 292
R RER + REE E + ER K ++ E
Sbjct: 419 REREREKDKKRDREEDEEDAYERRKLERKLREKE 452
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe
GN=rsd1 PE=1 SV=1
Length = 604
Score = 82 bits (202), Expect = 2e-015
Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Frame = +2
Query: 41 RDREKSRDGDRERSSKERDRGDRERSSKERDRSDREKSRDRERREREKERERRERRSSSR 220
+ R R DR+RSS R R SS+ R R D + R R E RSS
Sbjct: 141 QSRSPVRSRDRDRSS--RSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERSSRS 198
Query: 221 SRREEREREVVERGSRRHKDKKDEPE--------ADPERDQRTVFAYQMPLKATERDVYE 376
SR + + E + R H+ K+ ++ ERD+RTVF Q+ + T R++Y+
Sbjct: 199 SRAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYD 258
Query: 377 FFSKAGKVRDVRLIMDRNSRRSKGV 451
FF +AG VRD +++ D+ S RSKGV
Sbjct: 259 FFEQAGPVRDAQIVRDKISGRSKGV 283
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa
subsp. japonica GN=Os08g0159900 PE=2 SV=1
Length = 1049
Score = 80 bits (195), Expect = 1e-014
Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Frame = +2
Query: 8 RGGSRDRERDRRDREKSRDGDRERSSKERDRGDRERSSKERDRSDREKSRDRERREREKE 187
R SR R+ RD ++ RD DRER +E++R ER ++ER+ ++EK R+R RR E++
Sbjct: 36 RSSSRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRREERD 95
Query: 188 RERRERRSSSRSRREE----REREVVERGSRRHKDKKD-EPE--ADPERDQRTV 328
RE R RR + + EE R+R+ R S H +D EPE A R++ V
Sbjct: 96 REERSRRREAAAEEEEEDVDRDRKRRRRSSHHHHHHRDAEPEGPASGAREEEVV 149
Score = 74 bits (181), Expect = 5e-013
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 22/113 (19%)
Frame = +2
Query: 20 RDRERDRRDREKSRDGDRERSS------------KERDRGDRERSSKERDRSDREKSRDR 163
++++R+R RD DRERSS ++RDR DRER +E++R DRE+ + R
Sbjct: 17 KEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDR-DRERRHREKER-DREERKAR 74
Query: 164 ERREREKERERRERRSSSRSRREEREREVVERGSRRHKDKKDEPEADPERDQR 322
ER EREKE+ER R RREER+RE ER SRR + +E E D +RD++
Sbjct: 75 EREEREKEKERERAR-----RREERDRE--ER-SRRREAAAEEEEEDVDRDRK 119
Score = 73 bits (177), Expect = 1e-012
Identities = 50/106 (47%), Positives = 64/106 (60%), Gaps = 14/106 (13%)
Frame = +2
Query: 38 RRDREKSRDGDRERSSK--ERDRGDRERSS-----KERDRSDREKSRDRERREREKERER 196
RRD+EK DRERSS RDR DRERSS +E DR++ RDRERR REKER+R
Sbjct: 14 RRDKEK----DRERSSSRHHRDR-DRERSSSRHHHREDRDDDRDRDRDRERRHREKERDR 68
Query: 197 RERRSSSRSRRE-EREREVVERGSRRHKDKKD-EPEADPERDQRTV 328
ER++ R RE E+ERE R R ++++ EA E ++ V
Sbjct: 69 EERKAREREEREKEKERERARRREERDREERSRRREAAAEEEEEDV 114
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis
thaliana GN=RH42 PE=1 SV=2
Length = 1166
Score = 79 bits (192), Expect = 3e-014
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Frame = +2
Query: 23 DRERDRRDREKSRDGDRERSSKERDRGDRERSSKERDRSDREKSRDRERREREKERERRE 202
++ER R+ E+ R DR+R + +R D+ER +E+DR RE+ R+ +ER KERERRE
Sbjct: 118 EKERGHREHERDRGKDRKRDREREERKDKER-EREKDRERREREREEREKERVKERERRE 176
Query: 203 RRSSSRSRREEREREVVERGSRRHKDKKDEPEADPERDQRTV 328
R R RRE + ERGSRR+++++ E E V
Sbjct: 177 REDGERDRREREK----ERGSRRNRERERSREVGNEESDDDV 214
Score = 75 bits (182), Expect = 4e-013
Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Frame = +2
Query: 20 RDRER-DRRDREKSRDGDRERSSKERDRGDRERSSKERDRSDREKSRDRERREREKERER 196
RDRER +R+D+E+ R+ DRER +ER+ ++ER KER+R +RE +R+RREREKER
Sbjct: 136 RDREREERKDKEREREKDRERREREREEREKER-VKERERREREDG-ERDRREREKERGS 193
Query: 197 RERRSSSRSR---REEREREVVERGSRRHKDKKDEPEADPER 313
R R RSR EE + +V RR K+ + E + E+
Sbjct: 194 RRNRERERSREVGNEESDDDVKRDLKRRRKEGGERKEKEREK 235
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7
OS=Caenorhabditis elegans GN=rsp-7 PE=2 SV=3
Length = 452
Score = 79 bits (192), Expect = 3e-014
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Frame = +2
Query: 8 RGGSRDRERDRRDREKSRDGDRERS-SKERDRGDRERSSKERDRSDREKSRDRERREREK 184
R R R RDRR R + RD DR+R S+ RDR R RS +DR DR++SR R+RR R K
Sbjct: 299 RDRDRRRSRDRRSRSRDRDRDRDRKRSRSRDRKRRSRSRDNKDR-DRKRSRSRDRRRRSK 357
Query: 185 ERERRERRSSSRSRREERERE-VVERGSRRHKDKKDEPEADPERDQRT 325
R+R+ RS SRS+ +R+++ R + +DK+D E + +
Sbjct: 358 SRDRKRERSRSRSKDRKRDKKRSRSRSPEKRRDKEDRKTEKKENENES 405
>sp|Q5T200|ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 OS=Homo
sapiens GN=ZC3H13 PE=1 SV=1
Length = 1668
Score = 78 bits (190), Expect = 4e-014
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Frame = +2
Query: 8 RGGSRDRERDR---RDREKSRDGDRERSSKERDRGDRERSSKERDRSDREKSRDRER-RE 175
R +R+RER+R RDRE+ RD D +R + DRE+ +ER+R +RE+ R+RER RE
Sbjct: 709 RERAREREREREKERDRERDRDRDHDRERERERERDREK-EREREREERERERERERERE 767
Query: 176 REKERERRERRSSSRSRREEREREVVERGSRRHKDKKDEPEAD 304
RE+ERER R + R +R+ E ++G ++K++E D
Sbjct: 768 RERERERERARERDKERERQRDWEDKDKGRDDRREKREEIRED 810
Score = 77 bits (187), Expect = 1e-013
Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 13/109 (11%)
Frame = +2
Query: 20 RDRERDRR---DREKSRDGDRERSSKERDR-GDRERS-SKERDRS---DREKSRDRERRE 175
RDRER++ +RE++R+ +RER KERDR DR+R +ER+R DREK R+RER E
Sbjct: 697 RDREREKERELERERARERERER-EKERDRERDRDRDHDRERERERERDREKEREREREE 755
Query: 176 REKERERRERRSSSRSRREEREREVVERGSRRHKDKKDEPEADPERDQR 322
RE+ERER R R R ER R ER R + ++D + D RD R
Sbjct: 756 RERERERERERERERERERERAR---ERDKERER-QRDWEDKDKGRDDR 800
>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa
subsp. japonica GN=Os03g0708600 PE=2 SV=1
Length = 736
Score = 77 bits (189), Expect = 6e-014
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Frame = +2
Query: 8 RGGSRDRERDR-RDREKSRDGDRERS---SKERDRGDRERSSKERDRSDREKSRDRERRE 175
R RDR+RDR RDRE+ RD D R ++RDRGD R ++R+R DR++ RDRER +
Sbjct: 78 RDRDRDRDRDRDRDRERRRDDDSRRDRDRDRDRDRGDSSRRDRDRERGDRDRDRDRERGD 137
Query: 176 REKERERRERRSSSRSRREEREREV 250
R++ER RE+ + ERE+E+
Sbjct: 138 RDRERGDREKDRLEKMAEREREKEL 162
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis
thaliana GN=RH21 PE=2 SV=1
Length = 733
Score = 74 bits (179), Expect = 8e-013
Identities = 42/92 (45%), Positives = 64/92 (69%), Gaps = 5/92 (5%)
Frame = +2
Query: 17 SRDRERDR-RDREKSRDGDRERS-SKERDRGDRERSSKERDRSDREKSRDRERREREKER 190
+RD++RDR RDR++ RD DRER ++RDR DR+R ++RDR +RE+ R+R+RRER++E
Sbjct: 71 NRDKDRDRDRDRDRERDRDRERDRGRDRDR-DRDR-DRDRDR-ERERDRERDRRERDREP 127
Query: 191 ERRERRSSSRSRREEREREVVERGSRRHKDKK 286
+RR R + RE+ VE+ R K+K+
Sbjct: 128 DRRNREKEREEEVKAREKARVEKLVEREKEKE 159
>sp|Q568R1|CCD55_DANRE Coiled-coil domain-containing protein 55 OS=Danio rerio
GN=ccdc55 PE=1 SV=2
Length = 516
Score = 67 bits (162), Expect = 8e-011
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Frame = +2
Query: 2 ESRGGSRDRERDRRDREKSRDGDRERSSKE--RDRGDRERSSKERDRSDREKSRDRERRE 175
E RGG R RERDR + DR+R+ + RDR + +ERDR RD ++
Sbjct: 311 EDRGGDRRRERDREEDRARDRRDRDRNDRHGIRDRRNSSPKDRERDRKGERDRRDNSPKD 370
Query: 176 REKERE-RRERRSSSRSRREEREREVVERGSRRHKDKKDEPEADPERDQRTVFAY-QMPL 349
RE++R+ R+RR +S RE R+ + KD++D+ D +R++R + P
Sbjct: 371 RERDRKGERDRRDNSPKDRERETRD------KSPKDRRDKSPKDRDRERRDKSPKDREPE 424
Query: 350 KATERDVYE 376
+ ERD+ E
Sbjct: 425 RKGERDIRE 433
>sp|A8WT19|CWC22_CAEBR Pre-mRNA-splicing factor CWC22 homolog OS=Caenorhabditis
briggsae GN=let-858 PE=3 SV=2
Length = 935
Score = 66 bits (160), Expect = 1e-010
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Frame = +2
Query: 26 RERDRRDREKSRD--GDRERSSKERDRGDRERSSKERDRSDREKSRDRERREREKERE-R 196
R RDRRD R G R+RS ++ DRGD+ + DR + +DR+RR+R +ER+ R
Sbjct: 827 RGRDRRDSGDDRHDRGRRDRSKEKEDRGDKRSQRHDSREEDRRERKDRDRRDRSEERDNR 886
Query: 197 RERRSSSRSR----REEREREVVERGSRRHKDKKDEPEADPERDQR 322
R+R+ SRSR +R R RRH D + E D+R
Sbjct: 887 RDRKERSRSRDRRDHRDRSRSRERNEKRRHDDDRRREEKVGSDDRR 932
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,006,000,677
Number of Sequences: 518415
Number of Extensions: 228006000677
Number of Successful Extensions: 1428177800
Number of sequences better than 0.0: 0
|
