Library    |     Search    |     Batch query    |     SNP    |     SSR  

GenBank blast output of UN67641


BLASTX 7.6.2

Query= UN67641 /QuerySize=607
        (606 letters)

Database: GenBank nr;
          15,229,318 sequences; 5,219,829,378 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

gi|297819938|ref|XP_002877852.1| hypothetical protein ARALYDRAFT...     65   7e-009
gi|334185929|ref|NP_190795.3| Transcription initiation factor II...     64   2e-008

>gi|297819938|ref|XP_002877852.1| hypothetical protein ARALYDRAFT_348323
        [Arabidopsis lyrata subsp. lyrata]

          Length = 258

 Score =  65 bits (156), Expect = 7e-009
 Identities = 34/52 (65%), Positives = 41/52 (78%), Gaps = 2/52 (3%)
 Frame = +3

Query: 264 MELTLAEFGNIPKRYALDMSKDFIPMFVFCEPSSHGKLSGEGKKIKGTYELK 419
           MEL  AE GN+P+RY LDMSKDFIPM VFCE SS GK+S EG KIK  ++++
Sbjct:  74 MELARAESGNMPRRYTLDMSKDFIPMNVFCE-SSDGKMSVEG-KIKNKFDMR 123


 Score =  63 bits (152), Expect = 2e-008
 Identities = 34/54 (62%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
 Frame = +3

Query:  21 ETNLVERSMWLMKCPSLAAAASLKSLPLADDPHLPVAKVILSIDPLASVDDETK 182
           ET L +RSM LMK PSL  A+SL+SLP  DDP+ P AKVIL++D LA  D+ETK
Sbjct:  19 ETGLADRSMLLMKAPSL-VASSLQSLPFPDDPYRPDAKVILNVDLLAPEDEETK 71

>gi|334185929|ref|NP_190795.3| Transcription initiation factor IIF, beta subunit
        [Arabidopsis thaliana]

          Length = 269

 Score =  64 bits (153), Expect = 2e-008
 Identities = 33/52 (63%), Positives = 41/52 (78%), Gaps = 2/52 (3%)
 Frame = +3

Query: 264 MELTLAEFGNIPKRYALDMSKDFIPMFVFCEPSSHGKLSGEGKKIKGTYELK 419
           MEL  A+ GN+P+RY LDMSKDFIPM VFCE SS GK+S EG KIK  ++++
Sbjct:  85 MELARADSGNMPRRYTLDMSKDFIPMNVFCE-SSDGKMSVEG-KIKNKFDMR 134

  Database: GenBank nr
    Posted date:  Thu Sep 08 23:06:31 2011
  Number of letters in database: 5,219,829,378
  Number of sequences in database:  15,229,318

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 325,951,754,970
Number of Sequences: 15229318
Number of Extensions: 325951754970
Number of Successful Extensions: 117766831
Number of sequences better than 0.0: 0