BLASTX 7.6.2
Query= UN68398 /QuerySize=730
(729 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G49480.1 | Symbols: RTV1 | RTV1 (related to ve... 113 1e-025
TAIR9_protein||AT3G18990.1 | Symbols: VRN1, REM39 | VRN1 (REDUCE... 108 5e-024
>TAIR9_protein||AT1G49480.1 | Symbols: RTV1 | RTV1 (related to vernalization1
1); DNA binding / transcription factor | chr1:18314596-18315460
REVERSE
Length = 227
Score = 113 bits (282), Expect = 1e-025
Identities = 54/64 (84%), Positives = 58/64 (90%)
Frame = +1
Query: 517 PRGNNSSTPGGEDSENRSKFYESASARMRTATAEERERAITAAKTYEPTNPFFRVVLRPS 696
P NSSTPGG+DSENRSKFYESASAR RT TAEERERA+ AAKT+EPTNP+FRVVLRPS
Sbjct: 77 PEEVNSSTPGGDDSENRSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPS 136
Query: 697 YLYR 708
YLYR
Sbjct: 137 YLYR 140
Score = 107 bits (266), Expect = 9e-024
Identities = 55/80 (68%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Frame = +2
Query: 287 VNMDSANSEFNKRARLFEDHENKGSKVIHSMIPESTTPLNKGYDASTTTQNLFVESKPEA 466
+ MDSA ++FNKRARLFED E K +KVI+ PEST P+NKGY ST Q+ F ESK E
Sbjct: 1 MQMDSAQNQFNKRARLFEDPELKDAKVIYPSNPESTEPVNKGYGGSTAIQSFFKESKAE- 59
Query: 467 TTPKVLKKRGRKKKNPNPEE 526
TPKVLKKRGRKKKNPNPEE
Sbjct: 60 ETPKVLKKRGRKKKNPNPEE 79
>TAIR9_protein||AT3G18990.1 | Symbols: VRN1, REM39 | VRN1 (REDUCED VERNALIZATION
RESPONSE 1); transcription repressor | chr3:6549077-6551568 REVERSE
Length = 342
Score = 108 bits (268), Expect = 5e-024
Identities = 54/78 (69%), Positives = 62/78 (79%)
Frame = +1
Query: 475 KSP*EERKEEEES*PRGNNSSTPGGEDSENRSKFYESASARMRTATAEERERAITAAKTY 654
K P + ++++ + P NSS P +D ENRSKFYESASAR RT TAEERERAI AAKT+
Sbjct: 178 KIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTF 237
Query: 655 EPTNPFFRVVLRPSYLYR 708
EPTNPFFRVVLRPSYLYR
Sbjct: 238 EPTNPFFRVVLRPSYLYR 255
Score = 77 bits (187), Expect = 1e-014
Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 11/87 (12%)
Frame = +2
Query: 293 MDSANSEFNKRARLFEDHENKGSKVIH------SMIPESTTPLNKGYDASTTTQNLF--- 445
MDSA++ F KRARLFED E++ ++VI S +PEST P NKGY AS+ Q LF
Sbjct: 110 MDSAHNHF-KRARLFEDLEDEDAEVIFPSSVYPSPLPESTVPANKGY-ASSAIQTLFTGP 167
Query: 446 VESKPEATTPKVLKKRGRKKKNPNPEE 526
V+++ TPK+ KKRGRKKKN +PEE
Sbjct: 168 VKAEEPTPTPKIPKKRGRKKKNADPEE 194
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,344,743,188
Number of Sequences: 33410
Number of Extensions: 30344743188
Number of Successful Extensions: 1027522861
Number of sequences better than 0.0: 0
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