Library    |     Search    |     Batch query    |     SNP    |     SSR  

TAIR blast output of UN68999


BLASTX 7.6.2

Query= UN68999 /QuerySize=450
        (449 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT1G32790.2 | Symbols: CID11 | RNA-binding protei...     67   3e-012
TAIR9_protein||AT1G32790.1 | Symbols: CID11 | RNA-binding protei...     64   3e-011
TAIR9_protein||AT4G11385.1 | Symbols:  | unknown protein | chr4:...     49   1e-006
TAIR9_protein||AT3G49390.1 | Symbols: CID10 | CID10; RNA binding...     47   4e-006
TAIR9_protein||AT3G49390.2 | Symbols: CID10 | CID10; RNA binding...     47   4e-006

>TAIR9_protein||AT1G32790.2 | Symbols: CID11 | RNA-binding protein, putative |
        chr1:11875028-11877188 REVERSE

          Length = 407

 Score =  67 bits (163), Expect = 3e-012
 Identities = 37/59 (62%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
 Frame = -2

Query: 310 SFEDTCSSQITEASNALILALHVSTYVSLSIYIYVCVCLALSCETAYTDRHVKMFVCIS 134
           SF+D CSS+ITEASNALILAL V TY+    YIY CV L  +       RHVKMFVCIS
Sbjct: 342 SFKDACSSEITEASNALILALQVFTYLMSPQYIYRCVVLKTALH-----RHVKMFVCIS 395

>TAIR9_protein||AT1G32790.1 | Symbols: CID11 | RNA-binding protein, putative |
        chr1:11875174-11877188 REVERSE

          Length = 359

 Score =  64 bits (154), Expect = 3e-011
 Identities = 29/30 (96%)
 Frame = -3

Query: 348 SGVVLGSLPIRVSPSKTPVRPRSPRHPMH* 259
           SGVVLGSLPIRVSPSKTPVRPRSPRHPMH*
Sbjct: 330 SGVVLGSLPIRVSPSKTPVRPRSPRHPMH* 359

>TAIR9_protein||AT4G11385.1 | Symbols:  | unknown protein | chr4:6927087-6927678
        REVERSE

          Length = 144

 Score =  49 bits (114), Expect = 1e-006
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = -1

Query: 449 KKKKKKKKKKKKKKKKKKEKKKKKKGRKQWY 357
           K +KKKKKKKKKKKKKKK+KKKKK  R Q Y
Sbjct: 103 KIEKKKKKKKKKKKKKKKKKKKKKNLRSQRY 133


 Score =  47 bits (110), Expect = 4e-006
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = -2

Query: 448 KKKKKKKKKKKKKKKKKKKKKKKKKAAS 365
           K +KKKKKKKKKKKKKKKKKKKKK   S
Sbjct: 103 KIEKKKKKKKKKKKKKKKKKKKKKNLRS 130


 Score =  47 bits (110), Expect = 4e-006
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = -3

Query: 447 KKKKKKKKKKKKKKKKKRKKKKKKRPQ 367
           +KKKKKKKKKKKKKKKK+KKKK  R Q
Sbjct: 105 EKKKKKKKKKKKKKKKKKKKKKNLRSQ 131

>TAIR9_protein||AT3G49390.1 | Symbols: CID10 | CID10; RNA binding / protein
        binding | chr3:18314901-18317658 REVERSE

          Length = 354

 Score =  47 bits (110), Expect = 4e-006
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = -3

Query: 348 SGVVLGSLPIRVSPSKTPVRPRSPR 274
           SG+VLG+LPIRVSPSKTPVRP  PR
Sbjct: 325 SGIVLGALPIRVSPSKTPVRPHFPR 349

>TAIR9_protein||AT3G49390.2 | Symbols: CID10 | CID10; RNA binding / protein
        binding | chr3:18314901-18317658 REVERSE

          Length = 354

 Score =  47 bits (110), Expect = 4e-006
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = -3

Query: 348 SGVVLGSLPIRVSPSKTPVRPRSPR 274
           SG+VLG+LPIRVSPSKTPVRP  PR
Sbjct: 325 SGIVLGALPIRVSPSKTPVRPHFPR 349

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,510,550,426
Number of Sequences: 33410
Number of Extensions: 30510550426
Number of Successful Extensions: 1027640316
Number of sequences better than 0.0: 0