BLASTX 7.6.2
Query= UN70285 /QuerySize=788
(787 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|6069478|dbj|BAA85453.1| S-locus protein 4 [Brassica rapa] 283 3e-074
gi|18642418|emb|CAC81237.1| putative PCF11 protein [Brassica napus] 213 2e-053
gi|15219679|ref|NP_176823.1| Pre-mRNA cleavage complex II [Arabi... 155 1e-035
gi|18086323|gb|AAL57625.1| At1g66500/F28G11_6 [Arabidopsis thali... 155 1e-035
gi|297838177|ref|XP_002886970.1| hypothetical protein ARALYDRAFT... 143 3e-032
gi|15239923|ref|NP_199175.1| Pre-mRNA cleavage complex II [Arabi... 132 5e-029
>gi|6069478|dbj|BAA85453.1| S-locus protein 4 [Brassica rapa]
Length = 413
Score = 283 bits (722), Expect = 3e-074
Identities = 155/204 (75%), Positives = 165/204 (80%), Gaps = 20/204 (9%)
Frame = +3
Query: 141 MSSS----VHQRNSHRHAGNT-LKRPFDNPGGYGGRIGGFQ--EEDRSRYAPHPQKRPRY 299
MSSS VHQRN+HR+ G T LKRP DN G RIGGFQ EE+RSRYA PQKRPRY
Sbjct: 1 MSSSNGVFVHQRNAHRNGGRTMLKRPIDN---RGCRIGGFQEEEEERSRYA-QPQKRPRY 56
Query: 300 -QTQPQFQS------GTPPLYNRRHHQHDSNLSRVSNYGDVINSNSSNISSFAHRNSQSN 458
Q Q QFQS GTPP+Y R HH HDSNLSRVSNYGDVINSNSSN+ FA RN++SN
Sbjct: 57 HQAQTQFQSAKPAGGGTPPMY-RHHHHHDSNLSRVSNYGDVINSNSSNVFPFALRNNESN 115
Query: 459 ADYQKPYGYGNPNPQSVPLPLPYRKLDGFDSLPEWVPDFVTNTNREITGVRFNANPPLSQ 638
ADYQ+PYGY NPNPQ+VPLPLPYRKLDGFDSLPEWVP+FV NTNREITGVRFN N LSQ
Sbjct: 116 ADYQRPYGYRNPNPQTVPLPLPYRKLDGFDSLPEWVPNFVPNTNREITGVRFNGN-QLSQ 174
Query: 639 APPVFTNLPNSMSLTHSNMVSVVS 710
APPVFTNLPNSM L HSNMVSVVS
Sbjct: 175 APPVFTNLPNSMPLNHSNMVSVVS 198
>gi|18642418|emb|CAC81237.1| putative PCF11 protein [Brassica napus]
Length = 377
Score = 213 bits (542), Expect = 2e-053
Identities = 125/198 (63%), Positives = 143/198 (72%), Gaps = 30/198 (15%)
Frame = +3
Query: 141 MSSS----VHQRNSHRHAGNT-LKRPFDNPGGYGGRIGGFQ--EEDRSRYAPHPQKRPRY 299
MSSS VHQRN+HR+ G T LKRP DN G RIGGFQ EE+RSRYA PQKRPRY
Sbjct: 1 MSSSNGVFVHQRNAHRNGGRTMLKRPIDN---RGCRIGGFQEEEEERSRYA-QPQKRPRY 56
Query: 300 -QTQPQFQS------GTPPLYNRRHHQHDSNLSRVSNYGDVINSNSSNISSFAHRNSQSN 458
Q Q QFQS GTPP+Y RH HDSNLSRVSNYGDVINSNSSN+ FA RN++SN
Sbjct: 57 HQAQTQFQSAKPAGGGTPPMY--RH--HDSNLSRVSNYGDVINSNSSNVFPFALRNNESN 112
Query: 459 ADYQKPYGYGNPNPQSVPLPLPYRKLDGFDSLPEWVPDFVTNTNREITGVRFNANPPLSQ 638
ADYQ+PYGY NPNPQSVPLPLPYRKLDGFDSLPEWVP++VTN N + ++Q
Sbjct: 113 ADYQRPYGYRNPNPQSVPLPLPYRKLDGFDSLPEWVPNYVTNANPCVA--------IITQ 164
Query: 639 APPVFTNLPNSMSLTHSN 692
P V L + +S+ ++N
Sbjct: 165 QPVVSKELADLLSVLNNN 182
>gi|15219679|ref|NP_176823.1| Pre-mRNA cleavage complex II [Arabidopsis
thaliana]
Length = 416
Score = 155 bits (390), Expect = 1e-035
Identities = 108/201 (53%), Positives = 128/201 (63%), Gaps = 31/201 (15%)
Frame = +3
Query: 159 QRNSHRHAGNTLKRPFDNPGGYGGRIGGFQEEDRSRYAPHPQKRPRYQTQPQFQSGTPPL 338
QRN+ +A T+KR DN GYGG IGG+QEE +RYAP PQKR R Q Q QF+SG PL
Sbjct: 10 QRNA--NARTTMKRRSDN-RGYGGGIGGYQEE-TNRYAP-PQKRFRSQAQQQFRSGHNPL 64
Query: 339 YNRRHHQHDSNLSRVSNYG------DVINSNSSNISSFAHRNSQSNA-DYQKPY--GYGN 491
Y+ H +++N+SRVS+ DVI SN SSFA RN+ SN +YQKP+ GYGN
Sbjct: 65 YH-HHGSNNNNVSRVSSQSYNNCGVDVIASN----SSFALRNNDSNTNNYQKPFVAGYGN 119
Query: 492 PNPQSVPLPLPYRKLD---GFDSLPEWVPDFVTNT-NREITGVRFNANPPLSQAPPVFTN 659
PNPQ VPLPLPYRKLD DSLP+WVP+ T T N + F N PVFTN
Sbjct: 120 PNPQIVPLPLPYRKLDDNLSLDSLPDWVPNSRTLTPNYPVRSSNFVPN------TPVFTN 173
Query: 660 LPNSMSLTHSNMVSVVSHRYH 722
+ N M+ HSNMVSVVS H
Sbjct: 174 VQNPMN--HSNMVSVVSQSMH 192
>gi|18086323|gb|AAL57625.1| At1g66500/F28G11_6 [Arabidopsis thaliana]
Length = 416
Score = 155 bits (390), Expect = 1e-035
Identities = 108/201 (53%), Positives = 128/201 (63%), Gaps = 31/201 (15%)
Frame = +3
Query: 159 QRNSHRHAGNTLKRPFDNPGGYGGRIGGFQEEDRSRYAPHPQKRPRYQTQPQFQSGTPPL 338
QRN+ +A T+KR DN GYGG IGG+QEE +RYAP PQKR R Q Q QF+SG PL
Sbjct: 10 QRNA--NARTTMKRRSDN-RGYGGGIGGYQEE-TNRYAP-PQKRFRSQAQQQFRSGHNPL 64
Query: 339 YNRRHHQHDSNLSRVSNYG------DVINSNSSNISSFAHRNSQSNA-DYQKPY--GYGN 491
Y+ H +++N+SRVS+ DVI SN SSFA RN+ SN +YQKP+ GYGN
Sbjct: 65 YH-HHGSNNNNVSRVSSQSYNNCGVDVIASN----SSFALRNNDSNTNNYQKPFVAGYGN 119
Query: 492 PNPQSVPLPLPYRKLD---GFDSLPEWVPDFVTNT-NREITGVRFNANPPLSQAPPVFTN 659
PNPQ VPLPLPYRKLD DSLP+WVP+ T T N + F N PVFTN
Sbjct: 120 PNPQIVPLPLPYRKLDDNFSLDSLPDWVPNSRTLTPNYPVRSSNFVPN------TPVFTN 173
Query: 660 LPNSMSLTHSNMVSVVSHRYH 722
+ N M+ HSNMVSVVS H
Sbjct: 174 VQNPMN--HSNMVSVVSQSMH 192
>gi|297838177|ref|XP_002886970.1| hypothetical protein ARALYDRAFT_338779
[Arabidopsis lyrata subsp. lyrata]
Length = 466
Score = 143 bits (360), Expect = 3e-032
Identities = 95/156 (60%), Positives = 109/156 (69%), Gaps = 22/156 (14%)
Frame = +3
Query: 159 QRNSHR--HAGNTLKRPFDNPGGYGGRIGGFQEEDRSRYAPHPQKRPRYQTQPQ--FQSG 326
QRN+HR +AG TLKR DN GYG IG QEE R+RY P PQKR R QTQPQ F+SG
Sbjct: 10 QRNAHRNANAGTTLKRRIDNNRGYG--IGDLQEE-RNRYVP-PQKRFRSQTQPQTNFRSG 65
Query: 327 TPPLYNRRHHQHDSNLSRVS-----NYG-DVINSNSSNISSFAHRNSQSNA-DYQKPY-- 479
PLY+ H ++++N+SRVS NYG DVI SN SSF RN+ SN +YQKP+
Sbjct: 66 HIPLYH-HHGRNNNNMSRVSSQSYNNYGVDVIASN----SSFPLRNNDSNINNYQKPFIV 120
Query: 480 GYGNPNPQSVPLPLPYRKLDGFDSLPEWVPDFVTNT 587
GYGNPNPQ VPLPLPYRKLD DSLPEWVP+ T T
Sbjct: 121 GYGNPNPQIVPLPLPYRKLDDDDSLPEWVPNSRTLT 156
>gi|15239923|ref|NP_199175.1| Pre-mRNA cleavage complex II [Arabidopsis
thaliana]
Length = 410
Score = 132 bits (332), Expect = 5e-029
Identities = 91/165 (55%), Positives = 109/165 (66%), Gaps = 20/165 (12%)
Frame = +3
Query: 159 QRNSHRHAGNTLKRPFDNPGGYGGRIGGFQEEDRSRYAPHPQKRPRYQTQPQFQSGTPPL 338
QRN+ +AG T+KR DN GYGG IG +QEE R+RYAP PQKR R Q Q QF+SG PL
Sbjct: 10 QRNA--NAGTTMKRRNDN-RGYGGGIGCYQEE-RNRYAP-PQKRFRSQLQQQFRSGHNPL 64
Query: 339 YNRRHHQHDSNLSRVS-----NYG-DVINSNSSNISSFAHRNSQSNA-DYQKPY-GYGNP 494
Y+ + ++N+SRVS NYG DVI SN SSFA N+ SN +YQKP+ YGNP
Sbjct: 65 YHYGSNT-NNNVSRVSSQSYNNYGVDVIASN----SSFALPNNDSNTNNYQKPFVVYGNP 119
Query: 495 NPQSVPLPLPYRKLDGFDSLPEWVPDFVTNTNREITGVRFNANPP 629
NPQ VPLPLPYRKLD DSLP+WVP+ + N + F N P
Sbjct: 120 NPQIVPLPLPYRKLDPLDSLPQWVPN--STPNYPVRSSNFVPNTP 162
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,700,182,581
Number of Sequences: 15229318
Number of Extensions: 555700182581
Number of Successful Extensions: 174766259
Number of sequences better than 0.0: 0
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