BLASTX 7.6.2
Query= UN70431 /QuerySize=727
(726 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba] 149 3e-034
gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT... 146 4e-033
gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arab... 142 7e-032
gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana] 142 7e-032
gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigm... 139 5e-031
gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpo... 83 4e-014
gi|225436223|ref|XP_002273602.1| PREDICTED: similar to SIGB (SIG... 82 5e-014
gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vini... 82 5e-014
gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea] 80 2e-013
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 149 bits (376), Expect = 3e-034
Identities = 77/87 (88%), Positives = 82/87 (94%)
Frame = +1
Query: 265 SSETLLTSDEAVVAAAAAEALALARAALKVAKDATLFKNTHNSKLSVSSTPDKRSKWDQF 444
+SETLLTSDEAVVAAAAAEA+ALARAALKVAKDATLF N+HN+KLSVSS DKRSKWDQF
Sbjct: 95 ASETLLTSDEAVVAAAAAEAVALARAALKVAKDATLFGNSHNTKLSVSSAADKRSKWDQF 154
Query: 445 TEKERAGILGHLPVSDTGVVSDRVTPP 525
TEKERAGILGHL VSDTGVVSDR+T P
Sbjct: 155 TEKERAGILGHLAVSDTGVVSDRITAP 181
Score = 116 bits (289), Expect = 4e-024
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Frame = +1
Query: 529 RQTERKARRVKGLEKTASGMQ-SVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLT 705
RQTERKARRVKGLEKTASGMQ SVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLT
Sbjct: 215 RQTERKARRVKGLEKTASGMQSSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLT 274
Query: 706 ARE 714
ARE
Sbjct: 275 ARE 277
Score = 91 bits (225), Expect = 1e-016
Identities = 39/46 (84%), Positives = 43/46 (93%)
Frame = +1
Query: 106 MSSCLLPNFKCQPDSFSIHFRTSYSISKHNKSSVYFQPQCAVSTPP 243
MSSCLLPNFKCQPDSFS+HFRTSYS+SKH+K S +FQPQCAVST P
Sbjct: 1 MSSCLLPNFKCQPDSFSVHFRTSYSVSKHSKGSAFFQPQCAVSTSP 46
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915
[Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 146 bits (367), Expect = 4e-033
Identities = 83/131 (63%), Positives = 98/131 (74%), Gaps = 8/131 (6%)
Frame = +1
Query: 265 SSETLLTSDEAVVAAAAAEALALARAALKVAKDATLFKNTHNSKLSVSSTPDKRSKWDQF 444
+SETLLTSDEAVV AAAAEA+ALARAA+KVAKDATLFKN++N+ L +SST DKRSKWDQF
Sbjct: 95 ASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQF 154
Query: 445 TEKERAGILGHLPVSDTGVVSDRVTPPARQTE-------RKARRVKGLEKTASGMQSVK- 600
TEKERAGILGHL VSD G+VSD++T PA E K V+ LE+ S +V+
Sbjct: 155 TEKERAGILGHLAVSDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRS 214
Query: 601 TGSSSRKKRVA 633
T + RK R A
Sbjct: 215 TRQTERKARRA 225
Score = 107 bits (266), Expect = 2e-021
Identities = 62/100 (62%), Positives = 70/100 (70%), Gaps = 7/100 (7%)
Frame = +1
Query: 418 DKRSKWDQFTEK-ERAGILGHLPVSDTGVVSDRVTPPARQTERKARRVKGLEKTASGMQS 594
+K S D +EK E +L P V S RQTERKARR KGLEKTASG+ S
Sbjct: 184 NKESPGDLESEKQEEVELLEEQPSVSLAVRS------TRQTERKARRAKGLEKTASGIPS 237
Query: 595 VKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTARE 714
VKTGS+ RKKR+ +QE+DHNDPLRYLRMTTSSSKLLT RE
Sbjct: 238 VKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVRE 277
Score = 85 bits (209), Expect = 8e-015
Identities = 38/47 (80%), Positives = 40/47 (85%)
Frame = +1
Query: 106 MSSCLLPNFKCQPDSFSIHFRTSYSISKHNKSSVYFQPQCAVSTPPA 246
MSSCLLP FKC PDSFSIHFRTS+ KHNK SV+FQPQCAVST PA
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCARKHNKGSVFFQPQCAVSTSPA 47
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis
thaliana]
Length = 572
Score = 142 bits (356), Expect = 7e-032
Identities = 82/131 (62%), Positives = 96/131 (73%), Gaps = 8/131 (6%)
Frame = +1
Query: 265 SSETLLTSDEAVVAAAAAEALALARAALKVAKDATLFKNTHNSKLSVSSTPDKRSKWDQF 444
+SETLLTSDEAVV AAAAEA+ALARAA+KVAKDATLFKN++N+ L SST DKRSKWDQF
Sbjct: 95 ASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLLTSSTADKRSKWDQF 154
Query: 445 TEKERAGILGHLPVSDTGVVSDRVTPPARQTE-------RKARRVKGLEKTASGMQSVK- 600
TEKERAGILGHL VSD G+VSD++T A E K V+ LE+ S +V+
Sbjct: 155 TEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRS 214
Query: 601 TGSSSRKKRVA 633
T + RK R A
Sbjct: 215 TRQTERKARRA 225
Score = 108 bits (268), Expect = 1e-021
Identities = 63/104 (60%), Positives = 72/104 (69%), Gaps = 7/104 (6%)
Frame = +1
Query: 406 SSTPDKRSKWDQFTEK-ERAGILGHLPVSDTGVVSDRVTPPARQTERKARRVKGLEKTAS 582
+S +K S D +EK E +L P V S RQTERKARR KGLEKTAS
Sbjct: 180 ASASNKESIGDLESEKQEEVELLEEQPSVSLAVRS------TRQTERKARRAKGLEKTAS 233
Query: 583 GMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTARE 714
G+ SVKTGSS +KKR+ +QE+DHNDPLRYLRMTTSSSKLLT RE
Sbjct: 234 GIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVRE 277
Score = 85 bits (209), Expect = 8e-015
Identities = 38/47 (80%), Positives = 40/47 (85%)
Frame = +1
Query: 106 MSSCLLPNFKCQPDSFSIHFRTSYSISKHNKSSVYFQPQCAVSTPPA 246
MSSCLLP FKC PDSFSIHFRTS+ KHNK SV+FQPQCAVST PA
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPA 47
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 142 bits (356), Expect = 7e-032
Identities = 82/131 (62%), Positives = 96/131 (73%), Gaps = 8/131 (6%)
Frame = +1
Query: 265 SSETLLTSDEAVVAAAAAEALALARAALKVAKDATLFKNTHNSKLSVSSTPDKRSKWDQF 444
+SETLLTSDEAVV AAAAEA+ALARAA+KVAKDATLFKN++N+ L SST DKRSKWDQF
Sbjct: 95 ASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLLTSSTADKRSKWDQF 154
Query: 445 TEKERAGILGHLPVSDTGVVSDRVTPPARQTE-------RKARRVKGLEKTASGMQSVK- 600
TEKERAGILGHL VSD G+VSD++T A E K V+ LE+ S +V+
Sbjct: 155 TEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRS 214
Query: 601 TGSSSRKKRVA 633
T + RK R A
Sbjct: 215 TRQTERKARRA 225
Score = 103 bits (255), Expect = 4e-020
Identities = 63/106 (59%), Positives = 72/106 (67%), Gaps = 9/106 (8%)
Frame = +1
Query: 406 SSTPDKRSKWDQFTEK-ERAGILGHLPVSDTGVVSDRVTPPARQTERKARRVKGLEKTAS 582
+S +K S D +EK E +L P V S RQTERKARR KGLEKTAS
Sbjct: 180 ASASNKESIGDLESEKQEEVELLEEQPSVSLAVRS------TRQTERKARRAKGLEKTAS 233
Query: 583 GMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSS--KLLTARE 714
G+ SVKTGSS +KKR+ +QE+DHNDPLRYLRMTTSSS KLLT RE
Sbjct: 234 GIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVRE 279
Score = 85 bits (209), Expect = 8e-015
Identities = 38/47 (80%), Positives = 40/47 (85%)
Frame = +1
Query: 106 MSSCLLPNFKCQPDSFSIHFRTSYSISKHNKSSVYFQPQCAVSTPPA 246
MSSCLLP FKC PDSFSIHFRTS+ KHNK SV+FQPQCAVST PA
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPA 47
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1
[Arabidopsis thaliana]
Length = 572
Score = 139 bits (349), Expect = 5e-031
Identities = 81/131 (61%), Positives = 94/131 (71%), Gaps = 8/131 (6%)
Frame = +1
Query: 265 SSETLLTSDEAVVAAAAAEALALARAALKVAKDATLFKNTHNSKLSVSSTPDKRSKWDQF 444
+SETLLTSDEAVV AAAAEA+ALARAA+KVAKDATLFKN++ + L SST DKRSKWDQF
Sbjct: 95 ASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNYTNLLTSSTADKRSKWDQF 154
Query: 445 TEKERAGILGHLPVSDTGVVSDRVTPPARQTE-------RKARRVKGLEKTAS-GMQSVK 600
TEKERAGILGHL VSD G+VSD++T A E K V+ LE+ S G+
Sbjct: 155 TEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVGLAVRS 214
Query: 601 TGSSSRKKRVA 633
T + RK R A
Sbjct: 215 TRQTERKARRA 225
Score = 107 bits (267), Expect = 1e-021
Identities = 63/104 (60%), Positives = 72/104 (69%), Gaps = 7/104 (6%)
Frame = +1
Query: 406 SSTPDKRSKWDQFTEK-ERAGILGHLPVSDTGVVSDRVTPPARQTERKARRVKGLEKTAS 582
+S +K S D +EK E +L P V S RQTERKARR KGLEKTAS
Sbjct: 180 ASASNKESIGDLESEKQEEVELLEEQPSVGLAVRS------TRQTERKARRAKGLEKTAS 233
Query: 583 GMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTARE 714
G+ SVKTGSS +KKR+ +QE+DHNDPLRYLRMTTSSSKLLT RE
Sbjct: 234 GIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVRE 277
Score = 85 bits (209), Expect = 8e-015
Identities = 38/47 (80%), Positives = 40/47 (85%)
Frame = +1
Query: 106 MSSCLLPNFKCQPDSFSIHFRTSYSISKHNKSSVYFQPQCAVSTPPA 246
MSSCLLP FKC PDSFSIHFRTS+ KHNK SV+FQPQCAVST PA
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPA 47
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative
[Ricinus communis]
Length = 569
Score = 83 bits (203), Expect = 4e-014
Identities = 41/62 (66%), Positives = 52/62 (83%)
Frame = +1
Query: 529 RQTERKARRVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTA 708
RQTERKARR + +EK AS + SVK GS+S+KKR + QE+D++DPLRYLR TTS+S+LLTA
Sbjct: 215 RQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTA 274
Query: 709 RE 714
E
Sbjct: 275 SE 276
Score = 80 bits (197), Expect = 2e-013
Identities = 50/83 (60%), Positives = 61/83 (73%), Gaps = 6/83 (7%)
Frame = +1
Query: 265 SSETLLTSDEAVVAAAAAEALALARAALKVAKDATLF-KN----THNSKLSVSSTPDKRS 429
++ETL+TSDEAV+AAAAAEA+ALARAA+KVAKDA L KN SKL+ ST D S
Sbjct: 93 ATETLITSDEAVIAAAAAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTID-AS 151
Query: 430 KWDQFTEKERAGILGHLPVSDTG 498
+W QFTE ERA I+G ++TG
Sbjct: 152 RWPQFTETERARIIGDSVATETG 174
>gi|225436223|ref|XP_002273602.1| PREDICTED: similar to SIGB (SIGMA FACTOR B);
DNA binding / DNA-directed RNA polymerase/ transcription factor [Vitis
vinifera]
Length = 578
Score = 82 bits (202), Expect = 5e-014
Identities = 39/62 (62%), Positives = 53/62 (85%)
Frame = +1
Query: 529 RQTERKARRVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTA 708
RQ ERKARR + EK ++G+ SV++GS+SR+KRV+ QE+D++DPLRYLR TTS+S+LLTA
Sbjct: 224 RQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTA 283
Query: 709 RE 714
E
Sbjct: 284 TE 285
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 82 bits (202), Expect = 5e-014
Identities = 39/62 (62%), Positives = 53/62 (85%)
Frame = +1
Query: 529 RQTERKARRVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTA 708
RQ ERKARR + EK ++G+ SV++GS+SR+KRV+ QE+D++DPLRYLR TTS+S+LLTA
Sbjct: 221 RQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTA 280
Query: 709 RE 714
E
Sbjct: 281 TE 282
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 80 bits (197), Expect = 2e-013
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +1
Query: 529 RQTERKARRVKGLEKTASGMQSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTA 708
RQ ERKARR + EK AS + SVK GS+SRKKR + QE+D++DPLRYLR T+SS+LLT+
Sbjct: 221 RQGERKARRARAAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTS 280
Query: 709 RETT 720
E T
Sbjct: 281 SEET 284
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,700,182,581
Number of Sequences: 15229318
Number of Extensions: 555700182581
Number of Successful Extensions: 174766259
Number of sequences better than 0.0: 0
|
