BLASTX 7.6.2
Query= UN70526 /QuerySize=655
(654 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT... 299 4e-079
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 295 3e-078
gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thal... 295 5e-078
gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis ... 258 4e-067
gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 ... 258 4e-067
gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT... 257 9e-067
gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis ... 225 5e-057
gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast,... 213 3e-053
gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein... 202 4e-050
gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding... 196 3e-048
gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein... 195 4e-048
gi|224140195|ref|XP_002323470.1| predicted protein [Populus tric... 194 1e-047
gi|224069480|ref|XP_002326357.1| predicted protein [Populus tric... 191 6e-047
gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucl... 182 5e-044
gi|255639723|gb|ACU20155.1| unknown [Glycine max] 180 2e-043
gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucle... 175 6e-042
gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays] 171 9e-041
gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT... 170 2e-040
gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucl... 169 3e-040
gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucle... 168 7e-040
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714
[Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 299 bits (763), Expect = 4e-079
Identities = 161/195 (82%), Positives = 172/195 (88%), Gaps = 6/195 (3%)
Frame = +1
Query: 76 ASASSLALTTFNPNSLPFSVSKPSS-SLLPPSLSFKLNS-VFSSSSSAKCNSPASRFLRN 249
ASASSLAL++FNP SLPF VS+P+S SLLPPSLSFKLNS S S +AK NSPASRF+RN
Sbjct: 3 ASASSLALSSFNPKSLPFCVSRPASVSLLPPSLSFKLNSDSVSFSIAAKWNSPASRFVRN 62
Query: 250 VAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVE 429
VA+T +F VEE+ GFADD A PQ+QSFSADLKLFVGNLPF+VDSAQLAQLFESAGNVE
Sbjct: 63 VAITSEFEVEED--GFADDAA--PQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVE 118
Query: 430 MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSFS 609
MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAA QFNGYELDGR LRVNAGPPPPKRED FS
Sbjct: 119 MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPPPPKREDGFS 178
Query: 610 RGPRSSFGGGGGGGG 654
RGPRSSFG G G G
Sbjct: 179 RGPRSSFGSSGSGYG 193
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 295 bits (755), Expect = 3e-078
Identities = 159/195 (81%), Positives = 171/195 (87%), Gaps = 6/195 (3%)
Frame = +1
Query: 76 ASASSLALTTFNPNSLPFSVSKPSS-SLLPPSLSFKLNS-VFSSSSSAKCNSPASRFLRN 249
ASASSLAL++FNP SLPF VS+P+S SLL PSLSFKLNS S S +AK NSPASRF+RN
Sbjct: 3 ASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFVRN 62
Query: 250 VAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVE 429
VA+T +F VEE+ GFAD PP+EQSFSADLKLFVGNLPF+VDSAQLAQLFESAGNVE
Sbjct: 63 VAITSEFEVEED--GFAD--VAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVE 118
Query: 430 MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSFS 609
MVEVIYDK+TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR LRVNAGPPPPKRED FS
Sbjct: 119 MVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS 178
Query: 610 RGPRSSFGGGGGGGG 654
RGPRSSFG G G G
Sbjct: 179 RGPRSSFGSSGSGYG 193
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 295 bits (753), Expect = 5e-078
Identities = 159/195 (81%), Positives = 170/195 (87%), Gaps = 6/195 (3%)
Frame = +1
Query: 76 ASASSLALTTFNPNSLPFSVSKPSS-SLLPPSLSFKLNS-VFSSSSSAKCNSPASRFLRN 249
ASASSLAL++FNP SLPF VS+P+S SLL PSLSFKLNS S S +AK NSPASRF RN
Sbjct: 3 ASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFARN 62
Query: 250 VAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVE 429
VA+T +F VEE+ GFAD PP+EQSFSADLKLFVGNLPF+VDSAQLAQLFESAGNVE
Sbjct: 63 VAITSEFEVEED--GFAD--VAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVE 118
Query: 430 MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSFS 609
MVEVIYDK+TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR LRVNAGPPPPKRED FS
Sbjct: 119 MVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS 178
Query: 610 RGPRSSFGGGGGGGG 654
RGPRSSFG G G G
Sbjct: 179 RGPRSSFGSSGSGYG 193
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 258 bits (659), Expect = 4e-067
Identities = 143/203 (70%), Positives = 162/203 (79%), Gaps = 10/203 (4%)
Frame = +1
Query: 70 MAASASSLALTTFNPNSLPFSVSKPSS-SLLPPSLSFKLNS----VFSSSSSAKCNSPA- 231
M+ASASS L+ FNP SLP VS+P+S S+LPPSLSFKL+S +SS+ KC+SPA
Sbjct: 1 MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 58
Query: 232 --SRFLRNVAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQL 405
SRF+RNVAV+ DF VEE+D D + P + SFS DLKLFVGNL F+VDSAQLAQL
Sbjct: 59 YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 118
Query: 406 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPP 585
FESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQFNGYE +GR LRVNAGPPP
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178
Query: 586 PKREDSFSRGPRSSFGGGGGGGG 654
PKRE+SFSRGPRS G GGG
Sbjct: 179 PKREESFSRGPRSGGYGSERGGG 201
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis
thaliana]
Length = 342
Score = 258 bits (659), Expect = 4e-067
Identities = 143/203 (70%), Positives = 162/203 (79%), Gaps = 10/203 (4%)
Frame = +1
Query: 70 MAASASSLALTTFNPNSLPFSVSKPSS-SLLPPSLSFKLNS----VFSSSSSAKCNSPA- 231
M+ASASS L+ FNP SLP VS+P+S S+LPPSLSFKL+S +SS+ KC+SPA
Sbjct: 1 MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 58
Query: 232 --SRFLRNVAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQL 405
SRF+RNVAV+ DF VEE+D D + P + SFS DLKLFVGNL F+VDSAQLAQL
Sbjct: 59 YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 118
Query: 406 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPP 585
FESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQFNGYE +GR LRVNAGPPP
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178
Query: 586 PKREDSFSRGPRSSFGGGGGGGG 654
PKRE+SFSRGPRS G GGG
Sbjct: 179 PKREESFSRGPRSGGYGSERGGG 201
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440
[Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 257 bits (656), Expect = 9e-067
Identities = 142/203 (69%), Positives = 161/203 (79%), Gaps = 10/203 (4%)
Frame = +1
Query: 70 MAASASSLALTTFNPNSLPFSVSKPSS-SLLPPSLSFKLNS----VFSSSSSAKCNSPAS 234
M+ASASS L+ FNP SLP VS+P+S S+LPPSLSFKL+S +SS+ KC+SPA
Sbjct: 1 MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHIVSLFASSAVKCSSPAE 58
Query: 235 ---RFLRNVAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQL 405
RF+RNVAV+ DF VEE+D D + P + SFS DLKLFVGNL F+VDSAQLAQL
Sbjct: 59 YPLRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 118
Query: 406 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPP 585
FESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQFNGYE +GR LRVNAGPPP
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178
Query: 586 PKREDSFSRGPRSSFGGGGGGGG 654
PKRE+SFSRGPRS G GGG
Sbjct: 179 PKREESFSRGPRSGGYGSERGGG 201
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 225 bits (572), Expect = 5e-057
Identities = 126/182 (69%), Positives = 140/182 (76%), Gaps = 4/182 (2%)
Frame = +1
Query: 118 SLPFSVSKPSSSLLPPSLSFKLNSVFSSSSSAKCNSPA---SRFLRNVAVTEDFSVEEED 288
S P SVS SL S L S+F +SS+ KC+SPA SRF+RNVAV+ DF VEE+D
Sbjct: 13 SRPASVSVLPPSLSFKLHSDHLVSIF-ASSALKCSSPAEYPSRFVRNVAVSSDFEVEEDD 71
Query: 289 GGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRS 468
D + P + SFS DLKLFVGNL F+VDSAQLAQLFESAGNVEMVEVIYDKVTGRS
Sbjct: 72 MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRS 131
Query: 469 RGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSFSRGPRSSFGGGGGG 648
RGFGFVTMS+ +EVEAAAQQFNGYE +GR LRVNAGPPPPKRE+SFSRGPRS G G
Sbjct: 132 RGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERG 191
Query: 649 GG 654
GG
Sbjct: 192 GG 193
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 280
Score = 213 bits (540), Expect = 3e-053
Identities = 128/202 (63%), Positives = 147/202 (72%), Gaps = 25/202 (12%)
Frame = +1
Query: 76 ASASSLALTTFNPNSLPFSVSKPSSSLLPPSLSFKL--------NSVFSS--SSSAKCNS 225
ASASSL L + NP +L S+ P+ P SLSFKL +S+FSS + S
Sbjct: 4 ASASSLVLPSLNPKTL--SLCNPNK---PISLSFKLHAKPISIPSSLFSSFVPLQQQPYS 58
Query: 226 PASRFLRNVAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQL 405
+SRF+ +VA++ +F EE DV+ E SFS DLKLFVGNLPF+VDSAQLA L
Sbjct: 59 SSSRFVPSVAISSEFGQEE-------DVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGL 111
Query: 406 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPP 585
FESAGNVEMVEVIYDKVTGRSRGFGFVTMSS+ EVEAAAQQFNGYEL+GR LRVN+G PP
Sbjct: 112 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSG-PP 170
Query: 586 PKREDSFSRGPRSSFGGGGGGG 651
P+RE SFSR PR FGGGGGGG
Sbjct: 171 PQRESSFSRSPR--FGGGGGGG 190
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29
[Arabidopsis thaliana]
Length = 363
Score = 202 bits (513), Expect = 4e-050
Identities = 115/165 (69%), Positives = 132/165 (80%), Gaps = 10/165 (6%)
Frame = +1
Query: 70 MAASASSLALTTFNPNSLPFSVSKPSS-SLLPPSLSFKLNS----VFSSSSSAKCNSPA- 231
M+ASASS L+ FNP SLP VS+P+S S+LPPSLSFKL+S +SS+ KC+SPA
Sbjct: 1 MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 58
Query: 232 --SRFLRNVAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQL 405
SRF+RNVAV+ DF VEE+D D + P + SFS DLKLFVGNL F+VDSAQLAQL
Sbjct: 59 YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 118
Query: 406 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGY 540
FESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQFNGY
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGY 163
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein
precursor [Solanum tuberosum]
Length = 289
Score = 196 bits (497), Expect = 3e-048
Identities = 115/206 (55%), Positives = 143/206 (69%), Gaps = 20/206 (9%)
Frame = +1
Query: 70 MAASASSLALTTFNPNSLPFSVSKPSS----SLLPPSLSFKLNSVFSSSSSAKCNSPASR 237
MA+S+SSL + P +LP S+ +S SL P SL+ L SSSS N +SR
Sbjct: 1 MASSSSSLHFLSLTPQTLPKPTSQTTSISFFSLPPSSLNLSL-----SSSSTPRNFESSR 55
Query: 238 FLRNVAVTEDFSVE--------EEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQ 393
F+R V +++ +E EE+GG +D+ A +E++ + DLK+FVGNLPF VDSA
Sbjct: 56 FVRKVTLSDFDQIEEVEAGDDDEEEGGLSDEGA-SYEERNANPDLKIFVGNLPFSVDSAA 114
Query: 394 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNA 573
LA+LFE AG+VEMVEVIYDK+TGRSRGFGFVTMSS VEAA QQFNGYE+DGR LRVN+
Sbjct: 115 LAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVNS 174
Query: 574 GPPPPKREDSFSRGPRSSFGGGGGGG 651
GP PPKRE+SF G SS+ GG GGG
Sbjct: 175 GPAPPKRENSF--GDNSSYQGGRGGG 198
>gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 288
Score = 195 bits (495), Expect = 4e-048
Identities = 116/191 (60%), Positives = 134/191 (70%), Gaps = 12/191 (6%)
Frame = +1
Query: 79 SASSLALTTFN-PNSL----PFSVSKPSSSLLPPSLSFKLNSVFSSSSSAKCNSPASRFL 243
SASSL L + + P +L P SVS S SL NS+ S SS + +SRF+
Sbjct: 3 SASSLVLPSLSLPKTLAISKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSSRFV 62
Query: 244 RNVAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGN 423
RNVAV+ D+ +E DV E SFS DLKLFVGNLPF+VDSA LA LFE AGN
Sbjct: 63 RNVAVSSDYEQDE-------DVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGN 115
Query: 424 VEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDS 603
VEMVEVIYDK+TGRSRGFGFVTMS+V EVEAAAQQFNGYEL+GRQLRVN+GPPP +RE+S
Sbjct: 116 VEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENS 175
Query: 604 FSRGPRSSFGG 636
RG S+F G
Sbjct: 176 NFRGENSNFRG 186
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 194 bits (492), Expect = 1e-047
Identities = 114/184 (61%), Positives = 132/184 (71%), Gaps = 11/184 (5%)
Frame = +1
Query: 79 SASSLALTTFN-PNSLPFSVSKPSS-SLLPPSLSFKLNSVFSSSSSAKCNSP-ASRFLRN 249
SASSL L + N PN++ SKP+S L PS + L V S P +SRFL+N
Sbjct: 5 SASSLVLPSLNHPNTIKSFYSKPNSLFFLSPSSTSSLKPVSLLLSFQHQQQPLSSRFLKN 64
Query: 250 VAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVE 429
VA++ +F EE D EQSFS DLKLFVGNLPF+VDSA+LA LFE+AGNVE
Sbjct: 65 VAISSEFGQEE-------DFLSDGDEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVE 117
Query: 430 MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSFS 609
MVEVIYDKVTGRSRGFGFVTM+++ EVEAA++QFNGYELDGR LRVN GPPP K E SFS
Sbjct: 118 MVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQK-ESSFS 176
Query: 610 RGPR 621
RGPR
Sbjct: 177 RGPR 180
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 191 bits (485), Expect = 6e-047
Identities = 112/193 (58%), Positives = 136/193 (70%), Gaps = 20/193 (10%)
Frame = +1
Query: 79 SASSLALTTFN-PNSLPFSVSKPSS---SLLPPSLSFKLNSVFSSSSSAKCNSPASRFLR 246
SASSL L + N PN++ SKP+S L + S K S+F S + +SRFL+
Sbjct: 5 SASSLVLPSLNHPNTIKSFYSKPTSLSFLSLSSTSSIKPASLFLSFQQKQQQPLSSRFLK 64
Query: 247 NVAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 426
+VA++ +F EE+ G D E SFS DL+LFVGNLPF+V+SAQLA LF+SAGNV
Sbjct: 65 SVAISSEFGQEEDVFGDGD-------EPSFSPDLQLFVGNLPFNVNSAQLADLFKSAGNV 117
Query: 427 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPP------- 585
EMVEV YDKVTGRSRGFGFVTMS++ EVEAA+QQFNGYELDGR LRVN+GPPP
Sbjct: 118 EMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQFNGYELDGRPLRVNSGPPPQRETSFS 177
Query: 586 --PKREDSFSRGP 618
P+RE+SFSRGP
Sbjct: 178 RLPQRENSFSRGP 190
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,
chloroplastic; AltName: Full=CP29A; Flags: Precursor
Length = 273
Score = 182 bits (460), Expect = 5e-044
Identities = 113/196 (57%), Positives = 132/196 (67%), Gaps = 27/196 (13%)
Frame = +1
Query: 88 SLALTTFNPNSLPFSVSKPSSSL-------LPPSLSFKLNSVFSSSSSAKCNSPASRFLR 246
SL + P +LP + KP+S LPPS LN SSSSS C S SRF+R
Sbjct: 7 SLHFLSLTPQTLP--LPKPTSQTTSLSFFSLPPS---SLNLSLSSSSS--CFS--SRFVR 57
Query: 247 NVAVTEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 426
V +++ +E+ + G DD +E++FS DLK+FVGNLPF DSA LA+LFE AGNV
Sbjct: 58 KVTLSDFDQIEDVEDG--DDGV--EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNV 113
Query: 427 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSF 606
EMVEVIYDK+TGRSRGFGFVTMSS EVEAA QQFNGYELDGR LRVN+GPPP KRE+
Sbjct: 114 EMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN-- 171
Query: 607 SRGPRSSFGGGGGGGG 654
SSF GG GGG
Sbjct: 172 -----SSFRGGSRGGG 182
>gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 180 bits (455), Expect = 2e-043
Identities = 108/189 (57%), Positives = 129/189 (68%), Gaps = 13/189 (6%)
Frame = +1
Query: 88 SLALTTFNPNSLPFSVSKPSSSLLPPSLSFKLNSVF--SSSSSAKCNSPASRFLRNVAVT 261
+L L T P P S S SL P S +++VF ++ SS+ S +SRF+ +V+V
Sbjct: 12 TLTLRTRQPLCSPQCFSS-SLSLTPNSKPISISAVFLKTTLSSSSPLSLSSRFVPHVSV- 69
Query: 262 EDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEV 441
+E+E+ F D P SFS DLKLFVGNLPF VDSA+LA+LFESAGNVE+VEV
Sbjct: 70 ----LEQEEDTFGDGDGP-----SFSRDLKLFVGNLPFSVDSARLAELFESAGNVEVVEV 120
Query: 442 IYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSFSRGPR 621
IYDK TGRSRGFGFVTMSSV E EAAA+QFNGYELDGR LRVN+GPPP + E +
Sbjct: 121 IYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPARNESAPRFRGG 180
Query: 622 SSFGGGGGG 648
SSFG GGG
Sbjct: 181 SSFGSRGGG 189
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP30; Flags: Precursor
Length = 279
Score = 175 bits (442), Expect = 6e-042
Identities = 106/189 (56%), Positives = 127/189 (67%), Gaps = 15/189 (7%)
Frame = +1
Query: 115 NSLPFSVSKPSSSLLP----PSLSFKLNSVFSSSSSAKCNSP----ASRFLRNVAVTEDF 270
+SL F P + LLP + S S+ SS + +SP +SRF+R V + +
Sbjct: 6 SSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSSPSSCFSSRFVRKVTLPDFD 65
Query: 271 SVEE-EDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIY 447
+E+ EDG + +E++FS DLK+FVGNL F DSA LA+LFE AGNVEMVEVIY
Sbjct: 66 QIEDVEDGDEGVE-----EERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIY 120
Query: 448 DKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSFSRGPRSS 627
DK+TGRSRGFGFVTMSS EVEAA QQFNGYELDGR LRVN+GPPP KRE+S R SS
Sbjct: 121 DKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFR-ENSS 179
Query: 628 FGGGGGGGG 654
F GG GGG
Sbjct: 180 FRGGSRGGG 188
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
Length = 268
Score = 171 bits (432), Expect = 9e-041
Identities = 97/181 (53%), Positives = 113/181 (62%), Gaps = 14/181 (7%)
Frame = +1
Query: 112 PNSLPFSVSKPSSSLLPPSLSFKLNSVFSSSSSAKCNSPASRFLRNVAVTEDFSVEEEDG 291
P L S KP++ L F+L S+ + P + + + TE E EDG
Sbjct: 12 PRFLALSSPKPAAPAATAFLPFRLPPRAVSAPGRRVFEPVAVAVSSEYKTEGAEQEGEDG 71
Query: 292 GFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSR 471
+ FS DLKLFVGNLPF VDSAQLA LFE AG+VEMVEV+YD++TGRSR
Sbjct: 72 -----------SEEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSR 120
Query: 472 GFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSFSRGPRSSFGGGGGGG 651
GFGFVTMSS E EAA +QFNGY GRQLRVN GPPPP R++S R PR GGGGGGG
Sbjct: 121 GFGFVTMSSAEEAEAAVEQFNGYAFQGRQLRVNCGPPPP-RDESTPRAPRG--GGGGGGG 177
Query: 652 G 654
G
Sbjct: 178 G 178
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120
[Sorghum bicolor]
Length = 262
Score = 170 bits (429), Expect = 2e-040
Identities = 98/178 (55%), Positives = 121/178 (67%), Gaps = 16/178 (8%)
Frame = +1
Query: 100 TTFNPNSLPFSV----SKPSSSLLPPSLSFKLNSVFSSSSSAKCNSPASRFLRNVAVTED 267
T+ +P L SV + PS++ PS +L++V ++++ + P R AVTE+
Sbjct: 8 TSLSPQFLSLSVKPTPAAPSAAAFFPSGLPQLHAVSAAAAGFRPLEPV-RAAATAAVTEE 66
Query: 268 FSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIY 447
E + GG E+ FS DL++FVGNLPF VDSAQLA LFE AG+VEMVEVIY
Sbjct: 67 LEAEGQPGG----------EEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIY 116
Query: 448 DKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSFSRGPR 621
DK+TGRSRGFGFVTMSSV EVEAA +QFNGY LDGR LRVN+GPPPP R+ S RGPR
Sbjct: 117 DKLTGRSRGFGFVTMSSVQEVEAAVEQFNGYVLDGRSLRVNSGPPPP-RDPSSQRGPR 173
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B,
chloroplastic; AltName: Full=CP29B; Flags: Precursor
Length = 291
Score = 169 bits (428), Expect = 3e-040
Identities = 109/192 (56%), Positives = 128/192 (66%), Gaps = 19/192 (9%)
Frame = +1
Query: 91 LALTTFNPNSLPFSVSKPSSSLLPPSL-SFKLNSVFSSSSSAKCNSP--ASRFLRNVAVT 261
L +T P+SL KP+S+L SL S LN SSSS+ C+ S F VA++
Sbjct: 12 LFVTPQTPSSL-----KPNSTLSFFSLPSSSLNLSLSSSSTGLCSIKPFESSFSTRVALS 66
Query: 262 EDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEV 441
+E++ +VA P+ FS DLKLFVGNLPF VDSA LA LFE AGNVEMVEV
Sbjct: 67 GFDQLEDD-----VEVAEQPR---FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEV 118
Query: 442 IYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSF---SR 612
IYDK+TGRSRGFGFVTMS+ EVEAA QQFNGYE+DGR +RVNAGP P KRE+S R
Sbjct: 119 IYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGR 178
Query: 613 GPRSSFGGGGGG 648
G SS+GGG G
Sbjct: 179 GGNSSYGGGRDG 190
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP31; Flags: Precursor
Length = 292
Score = 168 bits (424), Expect = 7e-040
Identities = 111/193 (57%), Positives = 129/193 (66%), Gaps = 20/193 (10%)
Frame = +1
Query: 91 LALTTFNPNSLPFSVSKPSSSLLPPSL-SFKLNSVFSSSS---SAKCNSPASRFLRNVAV 258
L +T+ P+SL KP+S+L SL S LN SSSS SA S F VA+
Sbjct: 12 LFVTSQTPSSL-----KPNSTLSFFSLPSSSLNLSLSSSSIGHSASIKPFESSFSTRVAL 66
Query: 259 TEDFSVEEEDGGFADDVAPPPQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVE 438
+ DF E+D +VA P+ FS DLKLFVGNLPF VDSA LA LFE AGNVE+VE
Sbjct: 67 S-DFDQLEDD----VEVAEQPR---FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVE 118
Query: 439 VIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRQLRVNAGPPPPKREDSF---S 609
VIYDK++GRSRGFGFVTMS+ EVEAA QQFNGYE+DGR +RVNAGP P KRE+S
Sbjct: 119 VIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGG 178
Query: 610 RGPRSSFGGGGGG 648
RG SS+GGG G
Sbjct: 179 RGGNSSYGGGRDG 191
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,700,182,581
Number of Sequences: 15229318
Number of Extensions: 555700182581
Number of Successful Extensions: 174766259
Number of sequences better than 0.0: 0
|
