BLASTX 7.6.2
Query= UN71295 /QuerySize=638
(637 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q0P5J9|RPR1A_BOVIN Regulation of nuclear pre-mRNA domain-cont... 98 3e-020
sp|Q96P16|RPR1A_HUMAN Regulation of nuclear pre-mRNA domain-cont... 98 3e-020
sp|Q5R8Y3|RPR1A_PONAB Regulation of nuclear pre-mRNA domain-cont... 98 3e-020
sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-cont... 98 3e-020
sp|Q9CSU0|RPR1B_MOUSE Regulation of nuclear pre-mRNA domain-cont... 98 3e-020
sp|Q8VDS4|RPR1A_MOUSE Regulation of nuclear pre-mRNA domain-cont... 98 4e-020
sp|Q5ZM30|RPR1A_CHICK Regulation of nuclear pre-mRNA domain-cont... 97 8e-020
sp|Q5VT52|RPRD2_HUMAN Regulation of nuclear pre-mRNA domain-cont... 70 1e-011
sp|Q6NXI6|RPRD2_MOUSE Regulation of nuclear pre-mRNA domain-cont... 70 1e-011
sp|O74814|YJ03_SCHPO UPF0400 protein C337.03 OS=Schizosaccharomy... 56 2e-007
>sp|Q0P5J9|RPR1A_BOVIN Regulation of nuclear pre-mRNA domain-containing protein
1A OS=Bos taurus GN=RPRD1A PE=2 SV=2
Length = 312
Score = 98 bits (243), Expect = 3e-020
Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Frame = +2
Query: 119 SVFSEEILIDKLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLY 298
S FSE L KL++L++++QS++TLS W I +R + IVT WE++ + +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 299 LANDILQNSKRQGNEFVDEFWNVLPKAVKDIAVSQGDDRGKGVVSRLVKIWEERKMF-GS 475
LAND++QNSKR+G EF +F V+ +A K ++ S+ D+ K + R++ IWEER ++
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVS-SETDESCKKHLGRVLSIWEERSVYEND 120
Query: 476 RSKNLRDLMLGEDCP 520
+ L+ + G+ P
Sbjct: 121 VLEQLKQALYGDKKP 135
>sp|Q96P16|RPR1A_HUMAN Regulation of nuclear pre-mRNA domain-containing protein
1A OS=Homo sapiens GN=RPRD1A PE=1 SV=1
Length = 312
Score = 98 bits (243), Expect = 3e-020
Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Frame = +2
Query: 119 SVFSEEILIDKLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLY 298
S FSE L KL++L++++QS++TLS W I +R + IVT WE++ + +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 299 LANDILQNSKRQGNEFVDEFWNVLPKAVKDIAVSQGDDRGKGVVSRLVKIWEERKMF-GS 475
LAND++QNSKR+G EF +F V+ +A K ++ S+ D+ K + R++ IWEER ++
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVS-SETDESCKKHLGRVLSIWEERSVYEND 120
Query: 476 RSKNLRDLMLGEDCP 520
+ L+ + G+ P
Sbjct: 121 VLEQLKQALYGDKKP 135
>sp|Q5R8Y3|RPR1A_PONAB Regulation of nuclear pre-mRNA domain-containing protein
1A OS=Pongo abelii GN=RPRD1A PE=2 SV=1
Length = 312
Score = 98 bits (243), Expect = 3e-020
Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Frame = +2
Query: 119 SVFSEEILIDKLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLY 298
S FSE L KL++L++++QS++TLS W I +R + IVT WE++ + +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 299 LANDILQNSKRQGNEFVDEFWNVLPKAVKDIAVSQGDDRGKGVVSRLVKIWEERKMF-GS 475
LAND++QNSKR+G EF +F V+ +A K ++ S+ D+ K + R++ IWEER ++
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVS-SETDESCKKHLGRVLSIWEERSVYEND 120
Query: 476 RSKNLRDLMLGEDCP 520
+ L+ + G+ P
Sbjct: 121 VLEQLKQALYGDKKP 135
>sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein
1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1
Length = 326
Score = 98 bits (243), Expect = 3e-020
Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Frame = +2
Query: 119 SVFSEEILIDKLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLY 298
S FSE L KL++L++++QS++TLS W I +R A IV+ W ++ + +K+ LY
Sbjct: 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61
Query: 299 LANDILQNSKRQGNEFVDEFWNVLPKAVKDIAVSQGDDRGKGVVSRLVKIWEERKMFGSR 478
LAND++QNSKR+G EF EF +VL A +A + D+ K + RL+ IW+ER ++G
Sbjct: 62 LANDVIQNSKRKGPEFTREFESVLVDAFSHVA-READEGCKKPLERLLNIWQERSVYGGE 120
Query: 479 -SKNLRDLMLGEDCPLPLDVTNKRS 550
+ L+ M P P K+S
Sbjct: 121 FIQQLKLSMEDSKSPPPKATEEKKS 145
>sp|Q9CSU0|RPR1B_MOUSE Regulation of nuclear pre-mRNA domain-containing protein
1B OS=Mus musculus GN=Rprd1b PE=2 SV=2
Length = 326
Score = 98 bits (243), Expect = 3e-020
Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Frame = +2
Query: 119 SVFSEEILIDKLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLY 298
S FSE L KL++L++++QS++TLS W I +R A IV+ W ++ + +K+ LY
Sbjct: 2 SSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLY 61
Query: 299 LANDILQNSKRQGNEFVDEFWNVLPKAVKDIAVSQGDDRGKGVVSRLVKIWEERKMFGSR 478
LAND++QNSKR+G EF EF +VL A +A + D+ K + RL+ IW+ER ++G
Sbjct: 62 LANDVIQNSKRKGPEFTREFESVLVDAFSHVA-READEGCKKPLERLLNIWQERSVYGGE 120
Query: 479 -SKNLRDLMLGEDCPLPLDVTNKRS 550
+ L+ M P P K+S
Sbjct: 121 FIQQLKLSMEDSKSPPPKAAEEKKS 145
>sp|Q8VDS4|RPR1A_MOUSE Regulation of nuclear pre-mRNA domain-containing protein
1A OS=Mus musculus GN=Rprd1a PE=2 SV=1
Length = 312
Score = 98 bits (242), Expect = 4e-020
Identities = 49/117 (41%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Frame = +2
Query: 119 SVFSEEILIDKLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLY 298
S FSE L KL++L++++QS++TLS W I +R + IVT WE++ + +K+ LY
Sbjct: 2 SAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLY 61
Query: 299 LANDILQNSKRQGNEFVDEFWNVLPKAVKDIAVSQGDDRGKGVVSRLVKIWEERKMF 469
LAND++QNSKR+G EF +F V+ +A K ++ S+ D+ K + R++ IWEER ++
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVS-SETDESCKKHLGRVLSIWEERSVY 117
>sp|Q5ZM30|RPR1A_CHICK Regulation of nuclear pre-mRNA domain-containing protein
1A OS=Gallus gallus GN=RPRD1A PE=2 SV=1
Length = 268
Score = 97 bits (240), Expect = 8e-020
Identities = 51/132 (38%), Positives = 84/132 (63%), Gaps = 2/132 (1%)
Frame = +2
Query: 119 SVFSEEILIDKLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLY 298
S FSE L KL++L++++QS++TLS W I +R + IV+ WE++ + +K+ LY
Sbjct: 2 SAFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKAKPNRKLTFLY 61
Query: 299 LANDILQNSKRQGNEFVDEFWNVLPKAVKDIAVSQGDDRGKGVVSRLVKIWEERKMF-GS 475
LAND++QNSKR+G EF +F V+ +A K ++ S+ D+ K R++ IWEER ++
Sbjct: 62 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVS-SESDESCKKHPGRVLSIWEERSVYEND 120
Query: 476 RSKNLRDLMLGE 511
+ LR + G+
Sbjct: 121 VLEQLRQALYGD 132
>sp|Q5VT52|RPRD2_HUMAN Regulation of nuclear pre-mRNA domain-containing protein
2 OS=Homo sapiens GN=RPRD2 PE=1 SV=1
Length = 1461
Score = 70 bits (170), Expect = 1e-011
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Frame = +2
Query: 131 EEILIDKLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLYLAND 310
E L K + +T +SI+ LS WCI N+ IV W K + ++ L YLAND
Sbjct: 24 ESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLAND 83
Query: 311 ILQNSKRQGN-EFVDEFWNVLPKA---VKDIAVSQGDDRGKGVVSRLVKIWEERKMF 469
++QN KR+ F + F +VLP+A VKD +VS+ V R+ KIWE+R ++
Sbjct: 84 VIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKS-------VERIFKIWEDRNVY 133
>sp|Q6NXI6|RPRD2_MOUSE Regulation of nuclear pre-mRNA domain-containing protein
2 OS=Mus musculus GN=Rprd2 PE=1 SV=1
Length = 1469
Score = 70 bits (169), Expect = 1e-011
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Frame = +2
Query: 131 EEILIDKLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLYLAND 310
E L K + +T +SI+ LS WCI N+ IV W K + ++ L YLAND
Sbjct: 24 ESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLAND 83
Query: 311 ILQNSKRQGN-EFVDEFWNVLPKA---VKDIAVSQGDDRGKGVVSRLVKIWEERKMF 469
++QN KR+ F + F +VLP+A VKD +VS+ + R+ KIWE+R ++
Sbjct: 84 VIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKS-------IERIFKIWEDRNVY 133
>sp|O74814|YJ03_SCHPO UPF0400 protein C337.03 OS=Schizosaccharomyces pombe
GN=SPBC337.03 PE=1 SV=1
Length = 387
Score = 56 bits (133), Expect = 2e-007
Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Frame = +2
Query: 149 KLAKLNSTRQSIETLSHWCIFNRVKAEFIVTTWEKQFHSTEMAQKVPLLYLANDILQNSK 328
KLA LN T++SI ++HW +F++ A+ IV W + + + +K+ LLYL N+++Q S+
Sbjct: 11 KLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLNEVVQQSR 70
Query: 329 -RQGNEFVDEFWNVLPKAVKDIAVSQGDDRGKGVVSRLVKIWEERKMF 469
++ +E++D + +V D A + K + + +W +R +F
Sbjct: 71 VKKISEYIDAVSPYVVNSVAD-AYASVPASIKTKIKYVFDVWCQRGIF 117
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,032,376,884
Number of Sequences: 518415
Number of Extensions: 238032376884
Number of Successful Extensions: 1500547491
Number of sequences better than 0.0: 0
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