Library    |     Search    |     Batch query    |     SNP    |     SSR  

TAIR blast output of UN72003


BLASTX 7.6.2

Query= UN72003 /QuerySize=523
        (522 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT1G70200.1 | Symbols:  | RNA recognition motif (...    141   4e-034

>TAIR9_protein||AT1G70200.1 | Symbols:  | RNA recognition motif (RRM)-containing
        protein | chr1:26432514-26434351 REVERSE

          Length = 539

 Score =  141 bits (353), Expect = 4e-034
 Identities = 80/134 (59%), Positives = 96/134 (71%), Gaps = 14/134 (10%)
 Frame = +2

Query:  44 LCNSLLLHSRFKSP-RSIPSSSSPSLISPCFTTSAHISLP-------RAVVVKRSDGFRS 199
           LCNS+LLHS   S  +S  SS S  LIS   TTS +IS+        R V+ KRS+GF S
Sbjct:   6 LCNSVLLHSHSLSRFQSSSSSCSVYLISSARTTSKYISISHRIRQSFREVIEKRSNGFCS 65

Query: 200 LAVNKRRSSTE---EDVEEEEEDDEDWGEFEGD---EDEDEYEGEFLPMDKMKRWLEKKP 361
            AVNKRRS      E  +++EEDDEDWGEF+G+   E+E+E EGEFLPMDKMK+WLEKKP
Sbjct:  66 FAVNKRRSGDSVIVESDDDDEEDDEDWGEFDGEDEGEEEEEDEGEFLPMDKMKKWLEKKP 125

Query: 362 RGFGVGKKYETLIK 403
           RGFG+GKKYETLI+
Sbjct: 126 RGFGLGKKYETLIE 139


 Score =  56 bits (134), Expect = 1e-008
 Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
 Frame = +1

Query: 379 QKVRDFDKDKLLEEIEQSWKAQAANLNNLKTNDPLKRYHNNNNNNLIK 522
           +K     +DKLL+EIEQSWKAQAANLN LK NDPLK      ++NL+K
Sbjct: 132 KKYETLIEDKLLDEIEQSWKAQAANLNKLK-NDPLKSQQLKRDDNLLK 178

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,524,294,436
Number of Sequences: 33410
Number of Extensions: 31524294436
Number of Successful Extensions: 1060456713
Number of sequences better than 0.0: 0