BLASTX 7.6.2
Query= UN72771 /QuerySize=695
(694 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G02400.1 | Symbols: | FUNCTIONS IN: molecular... 185 3e-047
TAIR9_protein||AT5G08600.1 | Symbols: | U3 ribonucleoprotein (U... 160 8e-040
>TAIR9_protein||AT4G02400.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit
processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome,
Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is:
U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.1); Has 7412
Blast hits to 4272 proteins in 301 species: Archae - 10; Bacteria -
517; Metazoa - 2926; Fungi - 722; Plants - 242; Viruses - 149; Other
Eukaryotes - 2846 (source: NCBI BLink). | chr4:1054243-1057884 FORWARD
Length = 856
Score = 185 bits (468), Expect = 3e-047
Identities = 88/120 (73%), Positives = 104/120 (86%)
Frame = +1
Query: 334 ESKKTRAPISQSQDKKGSRDEESEDSESEAEEMVDGVLASASKETFEIPSQAELINRAFA 513
++ KTR PIS+ QDKK SRDEESEDSESEAE+MVDG+L SASKET+EIPSQAELI RAFA
Sbjct: 612 KAPKTRVPISKGQDKKESRDEESEDSESEAEQMVDGILTSASKETYEIPSQAELIQRAFA 671
Query: 514 GDDVLDEFEKDKEEVLNQEVPKPEKPVLLPDWGDWCNVQRKRGISKRMVMEHEAEERERE 693
GDDV++EFEKDK+EVLNQEVP+PEKPVL+P WG W NVQ+KRG+ MV EHE ++R+
Sbjct: 672 GDDVVEEFEKDKQEVLNQEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHEDANKKRK 731
Score = 155 bits (391), Expect = 3e-038
Identities = 83/127 (65%), Positives = 94/127 (74%), Gaps = 6/127 (4%)
Frame = +2
Query: 29 KPVSVSGRRVFGATAKVEAPKESKKDSDNFYDNSDSDNDMAGVEDNDMQDVRDNASPARN 208
K VSGRRVFGAT+KVEAPKESKKDSDNFYDNSDSDNDM G+E+ND+ V D ASPARN
Sbjct: 507 KSADVSGRRVFGATSKVEAPKESKKDSDNFYDNSDSDNDMEGIENNDLGAVGDTASPARN 566
Query: 209 TGTITETEK----FDDVAPKTTFDVAMFASGSWKKMASCKNTESKMSQRRHVHPS--HSL 370
TG ITETEK ++ A KTTFDVA+FASGSWKKM +N ESK + + V S
Sbjct: 567 TGAITETEKCCGDVENPASKTTFDVALFASGSWKKMKGSQNAESKKAPKTRVPISKGQDK 626
Query: 371 KIKRDQE 391
K RD+E
Sbjct: 627 KESRDEE 633
>TAIR9_protein||AT5G08600.1 | Symbols: | U3 ribonucleoprotein (Utp) family
protein | chr5:2786298-2789736 FORWARD
Length = 823
Score = 160 bits (404), Expect = 8e-040
Identities = 80/131 (61%), Positives = 97/131 (74%), Gaps = 5/131 (3%)
Frame = +1
Query: 316 KHRIQNESKKTRAPISQSQDKKGSR-----DEESEDSESEAEEMVDGVLASASKETFEIP 480
K+ ++ KT PISQSQDKK S D ES+DSESEAE+MVDG+L SKET+EIP
Sbjct: 587 KNAESKKASKTHVPISQSQDKKESSDSESDDSESDDSESEAEQMVDGILTCGSKETYEIP 646
Query: 481 SQAELINRAFAGDDVLDEFEKDKEEVLNQEVPKPEKPVLLPDWGDWCNVQRKRGISKRMV 660
QAEL++RAFAGDDV +FEKDK+EVLNQEVP+PEKPV + WG W N Q KRG+ R+V
Sbjct: 647 CQAELVSRAFAGDDVEGDFEKDKQEVLNQEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIV 706
Query: 661 MEHEAEERERE 693
EHE ++ RE
Sbjct: 707 REHEEAKKTRE 717
Score = 136 bits (341), Expect = 2e-032
Identities = 75/126 (59%), Positives = 89/126 (70%), Gaps = 12/126 (9%)
Frame = +2
Query: 29 KPVSVSGRRVFGATAKVEAPKESKKDSDNFYDNSD-SDNDMAGVEDNDMQDVRDNASPAR 205
K +V GRRVFGA EAPKES+K+SDN +DNSD SDNDM EDN+++ V+DNASPAR
Sbjct: 494 KSTNVVGRRVFGA----EAPKESEKESDNLFDNSDSSDNDM---EDNELEAVKDNASPAR 546
Query: 206 NTGTITETEKFDDV----APKTTFDVAMFASGSWKKMASCKNTESKMSQRRHVHPSHSLK 373
NT TI E EK DD+ A KTTFDVA++ASGSWKKM CKN ESK + + HV S S
Sbjct: 547 NTETIMEAEKLDDIAGNPASKTTFDVALYASGSWKKMTGCKNAESKKASKTHVPISQSQD 606
Query: 374 IKRDQE 391
K +
Sbjct: 607 KKESSD 612
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,698,405,169
Number of Sequences: 33410
Number of Extensions: 31698405169
Number of Successful Extensions: 1060557863
Number of sequences better than 0.0: 0
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