BLASTX 7.6.2
Query= UN73019 /QuerySize=759
(758 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll... 420 6e-118
TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll... 386 1e-107
TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll... 297 5e-081
TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll... 292 2e-079
TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVE... 127 7e-030
TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; ... 123 2e-028
TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; ... 123 2e-028
TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll... 122 3e-028
TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB... 121 6e-028
TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB... 121 6e-028
TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1... 121 6e-028
TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light h... 121 6e-028
TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; ... 119 2e-027
TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; ... 119 2e-027
TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | ... 117 7e-027
TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment bin... 116 2e-026
TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment bin... 116 2e-026
TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT... 106 2e-023
TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; ch... 90 2e-018
TAIR9_protein||AT1G15820.1 | Symbols: LHCB6, CP24 | LHCB6 (LIGHT... 76 2e-014
>TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 242
Score = 420 bits (1078), Expect = 6e-118
Identities = 203/214 (94%), Positives = 206/214 (96%)
Frame = +2
Query: 83 MASNSLMSCGIAAVYPSLLSSSKSKFASSGFALPNAGNVCRIRMAAHWMPGEPRPAYLDG 262
MASNSLMSCGIAAVYPSLLSSSKSKF S+G LPNAGNV RIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 263 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 442
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 443 VPGGQATYLGNPVPWCTLPTILAIEFLAIAFVEHQRNMEKDPEKKKYPGGAFDPLGYSKD 622
+PGGQATYLGNPVPW TLPTILAIEFLAIAFVEHQR+MEKDPEKKKYPGGAFDPLGYSKD
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 180
Query: 623 PKKFEELKVKEIKNGRLALLAFVGFCVQQSAYQG 724
PKK EELKVKEIKNGRLALLAFVGFCVQQSAY G
Sbjct: 181 PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPG 214
>TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339881-20340922 REVERSE
Length = 214
Score = 386 bits (990), Expect = 1e-107
Identities = 185/196 (94%), Positives = 189/196 (96%)
Frame = +2
Query: 83 MASNSLMSCGIAAVYPSLLSSSKSKFASSGFALPNAGNVCRIRMAAHWMPGEPRPAYLDG 262
MASNSLMSCGIAAVYPSLLSSSKSKF S+G LPNAGNV RIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 263 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 442
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 443 VPGGQATYLGNPVPWCTLPTILAIEFLAIAFVEHQRNMEKDPEKKKYPGGAFDPLGYSKD 622
+PGGQATYLGNPVPW TLPTILAIEFLAIAFVEHQR+MEKDPEKKKYPGGAFDPLGYSKD
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 180
Query: 623 PKKFEELKVKEIKNGR 670
PKK EELKVKEIKNG+
Sbjct: 181 PKKLEELKVKEIKNGK 196
>TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 208
Score = 297 bits (760), Expect = 5e-081
Identities = 143/151 (94%), Positives = 145/151 (96%)
Frame = +2
Query: 83 MASNSLMSCGIAAVYPSLLSSSKSKFASSGFALPNAGNVCRIRMAAHWMPGEPRPAYLDG 262
MASNSLMSCGIAAVYPSLLSSSKSKF S+G LPNAGNV RIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 263 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 442
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 443 VPGGQATYLGNPVPWCTLPTILAIEFLAIAF 535
+PGGQATYLGNPVPW TLPTILAIEFLAIAF
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAF 151
>TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339961-20340922 REVERSE
Length = 165
Score = 292 bits (746), Expect = 2e-079
Identities = 140/148 (94%), Positives = 142/148 (95%)
Frame = +2
Query: 83 MASNSLMSCGIAAVYPSLLSSSKSKFASSGFALPNAGNVCRIRMAAHWMPGEPRPAYLDG 262
MASNSLMSCGIAAVYPSLLSSSKSKF S+G LPNAGNV RIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 263 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 442
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 443 VPGGQATYLGNPVPWCTLPTILAIEFLA 526
+PGGQATYLGNPVPW TLPTILAIEFLA
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLA 148
>TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX
OF PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408200-6409496
FORWARD
Length = 281
Score = 127 bits (319), Expect = 7e-030
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Frame = +2
Query: 245 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 415
P YL+G GD+G+DP GLG+ PEN +Y+ ELIH RWAML G ++PEAL YG
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 416 -----WVKAQEWAAVPGGQATYLGNPVPWCTLPTILAIEFLAIAFVEHQR-NMEKDPEKK 577
W K + G Y G +P L + E + + E+ R D E K
Sbjct: 142 GPEAVWFKTGA-LLLDGNTLNYFGKNIP-INLVLAVVAEVVLLGGAEYYRITNGLDFEDK 199
Query: 578 KYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 706
+PGG FDPLG +KDP++ LKVKEIKNGRLA+ A +GF +Q
Sbjct: 200 LHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQ 242
>TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll
binding | chr2:14524818-14525618 FORWARD
Length = 267
Score = 123 bits (307), Expect = 2e-028
Identities = 77/171 (45%), Positives = 94/171 (54%), Gaps = 15/171 (8%)
Frame = +2
Query: 233 GEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 403
GEP P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 404 ----GYGNWVKAQEWAAVPGGQATYLGNP--VPWCTLPTILAIEFLAIAFVEHQRNMEKD 565
G W KA GG YLGNP V ++ I A + + + VE R
Sbjct: 122 GVKFGEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180
Query: 566 P----EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 706
P E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF VQ
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQ 231
>TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll
binding | chr2:14522716-14523513 REVERSE
Length = 266
Score = 123 bits (307), Expect = 2e-028
Identities = 77/171 (45%), Positives = 94/171 (54%), Gaps = 15/171 (8%)
Frame = +2
Query: 233 GEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL--- 403
GEP P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 404 ----GYGNWVKAQEWAAVPGGQATYLGNP--VPWCTLPTILAIEFLAIAFVEHQRNMEKD 565
G W KA GG YLGNP V ++ I A + + + VE R
Sbjct: 121 GVKFGEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 179
Query: 566 P----EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 706
P E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF VQ
Sbjct: 180 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQ 230
>TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll binding |
chr3:22745736-22747032 FORWARD
Length = 258
Score = 122 bits (305), Expect = 3e-028
Identities = 86/234 (36%), Positives = 115/234 (49%), Gaps = 42/234 (17%)
Frame = +2
Query: 83 MASNSLMSCGIAAV-YPSLLSSS----KSKFASSGFALPNAGNVCRIRMAAH------WM 229
MAS+ S IAA+ PS L K K + P+A +R A W
Sbjct: 1 MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDAS----VRAVAADPDRPIWF 56
Query: 230 PGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGY 409
PG P +LDGS PGDFGFDPLGL P++L+ ++E++HCRWAML GI +PE L
Sbjct: 57 PGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTK 116
Query: 410 GNWVKAQEWAAVPGGQATYLGNPVPWCTLPTILAIEFLAIAFVEHQR--------NMEKD 565
+ W G+ Y + T+ +E + I + E +R ++ D
Sbjct: 117 IGILNTPSW--YTAGEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTD 168
Query: 566 P---------EKKKYPGGA-FDPLGY-SKDPKKFEELKVKEIKNGRLALLAFVG 694
P YPGG FDPLG+ S P K +EL+ KEIKNGRLA+LA +G
Sbjct: 169 PVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMG 222
>TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL
A/B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-10473246
REVERSE
Length = 268
Score = 121 bits (302), Expect = 6e-028
Identities = 74/167 (44%), Positives = 91/167 (54%), Gaps = 14/167 (8%)
Frame = +2
Query: 245 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 403
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 404 GYGNWVKAQEWAAVPGGQATYLGNP--VPWCTLPTILAIEFLAIAFVEHQRNMEKDP--- 568
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 569 -EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 706
E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF VQ
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQ 232
>TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL
A/B-BINDING PROTEIN 2); chlorophyll binding | chr1:10475089-10475892
REVERSE
Length = 268
Score = 121 bits (302), Expect = 6e-028
Identities = 74/167 (44%), Positives = 91/167 (54%), Gaps = 14/167 (8%)
Frame = +2
Query: 245 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 403
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 404 GYGNWVKAQEWAAVPGGQATYLGNP--VPWCTLPTILAIEFLAIAFVEHQRNMEKDP--- 568
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 569 -EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 706
E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF VQ
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQ 232
>TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1
(CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding |
chr1:10478071-10478874 FORWARD
Length = 268
Score = 121 bits (302), Expect = 6e-028
Identities = 74/167 (44%), Positives = 91/167 (54%), Gaps = 14/167 (8%)
Frame = +2
Query: 245 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 403
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 404 GYGNWVKAQEWAAVPGGQATYLGNP--VPWCTLPTILAIEFLAIAFVEHQRNMEKDP--- 568
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 569 -EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 706
E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF VQ
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQ 232
>TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light harvesting
complex PSII); chlorophyll binding | chr2:16745884-16747190 FORWARD
Length = 277
Score = 121 bits (302), Expect = 6e-028
Identities = 64/136 (47%), Positives = 93/136 (68%), Gaps = 4/136 (2%)
Frame = +2
Query: 320 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNPVPWCTLP 499
++R++E ELIH RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 134 IQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG--SSYLGQPLPF-SLT 190
Query: 500 TILAIEFLAIAFVEHQRNMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLAL 679
T++ IE L + ++E QRN E DPEK+ YPGG FDPLG + DP+K + LK+ EIK+ RLA+
Sbjct: 191 TLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAM 250
Query: 680 LAFVGFCVQQSAYQGQ 727
+AF+ F + Q+A+ G+
Sbjct: 251 VAFLIFAL-QAAFTGK 265
>TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll
binding | chr2:1823449-1824331 REVERSE
Length = 266
Score = 119 bits (297), Expect = 2e-027
Identities = 73/172 (42%), Positives = 93/172 (54%), Gaps = 19/172 (11%)
Frame = +2
Query: 236 EPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 403
E P+YL G PGD+G+D GL PE + +E E+IH RWAML G PE L
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 404 ---GYGNWVKAQEWAAVPGGQATYLGNP--VPWCTLPTILAIEFLAIAFVEHQR------ 550
G W KA GG YLGNP + ++ I A++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 551 NMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 706
DP YPGGAFDPL ++DP+ F ELKVKE+KNGRLA+ + GF VQ
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQ 230
>TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll
binding | chr2:1799436-1800329 REVERSE
Length = 266
Score = 119 bits (297), Expect = 2e-027
Identities = 73/172 (42%), Positives = 93/172 (54%), Gaps = 19/172 (11%)
Frame = +2
Query: 236 EPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 403
E P+YL G PGD+G+D GL PE + +E E+IH RWAML G PE L
Sbjct: 63 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 122
Query: 404 ---GYGNWVKAQEWAAVPGGQATYLGNP--VPWCTLPTILAIEFLAIAFVEHQR------ 550
G W KA GG YLGNP + ++ I A++ + + F+E R
Sbjct: 123 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPL 181
Query: 551 NMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 706
DP YPGGAFDPL ++DP+ F ELKVKE+KNGRLA+ + GF VQ
Sbjct: 182 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQ 230
>TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3;
chlorophyll binding | chr3:10256002-10256921 FORWARD
Length = 267
Score = 117 bits (293), Expect = 7e-027
Identities = 73/172 (42%), Positives = 92/172 (53%), Gaps = 19/172 (11%)
Frame = +2
Query: 236 EPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL---- 403
E P+YL G PGD+G+D GL PE + +E E+IH RWAML G PE L
Sbjct: 64 ENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG 123
Query: 404 ---GYGNWVKAQEWAAVPGGQATYLGNP--VPWCTLPTILAIEFLAIAFVEHQR------ 550
G W KA GG YLGNP + ++ I A + + + F+E R
Sbjct: 124 VKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPL 182
Query: 551 NMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 706
DP YPGGAFDPL ++DP+ F ELKVKE+KNGRLA+ + GF VQ
Sbjct: 183 GEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQ 231
>TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 116 bits (289), Expect = 2e-026
Identities = 73/189 (38%), Positives = 102/189 (53%), Gaps = 34/189 (17%)
Frame = +2
Query: 218 AHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPE 397
A W+PG P YLDG+ GD+GFDPLGLGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 398 AL---GYGNWVKAQEWAAVPGGQATYLGNPVPWCTLPTILAIEFLAIAFVEHQRNME--- 559
L G N E AV + + T++ ++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 560 -----------------KDPEKKKYPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALLA 685
+ + YPGG +PLG +KD + + K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMA 216
Query: 686 FVGFCVQQS 712
+GF VQ S
Sbjct: 217 MLGFFVQAS 225
>TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 116 bits (289), Expect = 2e-026
Identities = 73/189 (38%), Positives = 102/189 (53%), Gaps = 34/189 (17%)
Frame = +2
Query: 218 AHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPE 397
A W+PG P YLDG+ GD+GFDPLGLGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 398 AL---GYGNWVKAQEWAAVPGGQATYLGNPVPWCTLPTILAIEFLAIAFVEHQRNME--- 559
L G N E AV + + T++ ++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 560 -----------------KDPEKKKYPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALLA 685
+ + YPGG +PLG +KD + + K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMA 216
Query: 686 FVGFCVQQS 712
+GF VQ S
Sbjct: 217 MLGFFVQAS 225
>TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING
CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding |
chr3:17493622-17494773 REVERSE
Length = 252
Score = 106 bits (264), Expect = 2e-023
Identities = 66/170 (38%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Frame = +2
Query: 224 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 403
W+PG P YL GS GD GFDPLGL E PENL+ + ++EL++ RWAML V G+L+PE
Sbjct: 57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116
Query: 404 GYGNWVKAQEWAAVPGGQATYLGNPVPWCTLPTIL--AIEFLAIAFVEHQRNMEKDPEKK 577
+ EW G+ Y + + IL +E +++ ++ +DP K
Sbjct: 117 TKIGIINVPEW--YDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 174
Query: 578 KY--PGGAFDPLGYSKDPKKF---EELKVKEIKNGRLALLAFVGFCVQQS 712
+Y P G G +P F +E K KE+ NGRLA+LAF+GF VQ +
Sbjct: 175 QYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHN 224
>TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; chlorophyll
binding | chr1:6612806-6613799 FORWARD
Length = 271
Score = 90 bits (221), Expect = 2e-018
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = +2
Query: 224 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 403
W PG P +LDGS PGDFGFDPLGLG P+ L+ + ++ELIH RWAMLAV GI++PE L
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127
Query: 404 GYGNWVKAQEW 436
+++ W
Sbjct: 128 ERLGFIENFSW 138
>TAIR9_protein||AT1G15820.1 | Symbols: LHCB6, CP24 | LHCB6 (LIGHT HARVESTING
COMPLEX PSII SUBUNIT 6); chlorophyll binding | chr1:5446685-5447676
REVERSE
Length = 259
Score = 76 bits (186), Expect = 2e-014
Identities = 42/78 (53%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = +2
Query: 245 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVK 424
P +LDGS PGDFGFDPLGLG+ P L+ Y+E+ELIH RWAM AV GI V +A W +
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFE 129
Query: 425 --AQEWAAVPGGQATYLG 472
AQ A P + LG
Sbjct: 130 AGAQPDAIAPFSFGSLLG 147
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,885,191,315
Number of Sequences: 33410
Number of Extensions: 31885191315
Number of Successful Extensions: 1071391045
Number of sequences better than 0.0: 0
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