BLASTX 7.6.2
Query= UN74272 /QuerySize=565
(564 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297837119|ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subs... 120 2e-025
gi|30696792|ref|NP_176490.2| nuclear RNA polymerase D1A [Arabido... 115 4e-024
gi|225426759|ref|XP_002275898.1| PREDICTED: hypothetical protein... 92 3e-017
gi|297742608|emb|CBI34757.3| unnamed protein product [Vitis vini... 92 3e-017
gi|224053985|ref|XP_002298071.1| RNA polymerase IV subunit [Popu... 79 3e-013
gi|255537259|ref|XP_002509696.1| DNA-directed RNA polymerase, pu... 74 1e-011
gi|242074052|ref|XP_002446962.1| hypothetical protein SORBIDRAFT... 68 7e-010
gi|308080362|ref|NP_001182824.1| DNA dependent RNA polymerase D ... 66 2e-009
gi|219662986|gb|ACL30982.1| mutant DNA dependent RNA polymerase ... 66 2e-009
gi|238013416|gb|ACR37743.1| unknown [Zea mays] 66 2e-009
gi|115460018|ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japo... 63 2e-008
gi|116309922|emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indic... 63 2e-008
gi|115480591|ref|NP_001063889.1| Os09g0555200 [Oryza sativa Japo... 63 2e-008
gi|215736910|dbj|BAG95839.1| unnamed protein product [Oryza sati... 63 2e-008
gi|218202606|gb|EEC85033.1| hypothetical protein OsI_32338 [Oryz... 63 2e-008
gi|222642066|gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryz... 63 2e-008
gi|302781186|ref|XP_002972367.1| hypothetical protein SELMODRAFT... 63 2e-008
gi|168011278|ref|XP_001758330.1| predicted protein [Physcomitrel... 61 7e-008
gi|302780129|ref|XP_002971839.1| hypothetical protein SELMODRAFT... 61 7e-008
gi|303277021|ref|XP_003057804.1| predicted protein [Micromonas p... 57 1e-006
>gi|297837119|ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata]
Length = 1456
Score = 120 bits (299), Expect = 2e-025
Identities = 54/76 (71%), Positives = 63/76 (82%)
Frame = -3
Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 377
HPN KIGPG +GI+VA SKHG++RCFEVVR DGT EDFSYHKCVLGAT+IIAPK+VN
Sbjct: 1373 HPNSADKIGPGLKGIRVAKSKHGDSRCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKVNL 1432
Query: 376 YKAKYLRKGAGQAGTI 329
YK+KYL+ G Q G +
Sbjct: 1433 YKSKYLKNGTHQPGRL 1448
>gi|30696792|ref|NP_176490.2| nuclear RNA polymerase D1A [Arabidopsis thaliana]
Length = 1453
Score = 115 bits (287), Expect = 4e-024
Identities = 52/74 (70%), Positives = 63/74 (85%)
Frame = -3
Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 377
HPN KIGPG +GI+VA SKHG++ CFEVVR DGT EDFSYHKCVLGAT+IIAPK++NF
Sbjct: 1374 HPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNF 1433
Query: 376 YKAKYLRKGAGQAG 335
YK+KYL+ G ++G
Sbjct: 1434 YKSKYLKNGTLESG 1447
>gi|225426759|ref|XP_002275898.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 1391
Score = 92 bits (228), Expect = 3e-017
Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FHP RD KIGPG Q IKV +SK+ N RCF +VRTDGT EDFSYHKCV GA EII P+R
Sbjct: 1319 FHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRA 1378
Query: 382 NFYKAKYL 359
Y++++L
Sbjct: 1379 RSYQSRWL 1386
>gi|297742608|emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 92 bits (228), Expect = 3e-017
Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FHP RD KIGPG Q IKV +SK+ N RCF +VRTDGT EDFSYHKCV GA EII P+R
Sbjct: 1277 FHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRA 1336
Query: 382 NFYKAKYL 359
Y++++L
Sbjct: 1337 RSYQSRWL 1344
>gi|224053985|ref|XP_002298071.1| RNA polymerase IV subunit [Populus
trichocarpa]
Length = 1517
Score = 79 bits (193), Expect = 3e-013
Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVAN-SKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FHP RD KIG G + IKV N ++ + RCF +VRTDGT EDFSY KC+ A EIIAP+R
Sbjct: 1431 FHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEIIAPQRA 1490
Query: 382 NFYKAKYL 359
Y KYL
Sbjct: 1491 KRYCEKYL 1498
>gi|255537259|ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus
communis]
Length = 1475
Score = 74 bits (179), Expect = 1e-011
Identities = 34/59 (57%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKR 386
FHP ++ KIG GF+ IKV + ++ ++RCF +VR+DGT EDFSY KCV GA EIIAP +
Sbjct: 1333 FHPRKEEKIGSGFKDIKVVKHPEYQDSRCFSLVRSDGTIEDFSYRKCVYGALEIIAPHK 1391
>gi|242074052|ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933
[Sorghum bicolor]
Length = 1203
Score = 68 bits (164), Expect = 7e-010
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FHP KIG G + IKV N H RCF ++R D TTEDFSYHKCV GA I+P+
Sbjct: 1134 FHPRGAEKIGVGVREIKVGLNPNHPGTRCFILLRNDDTTEDFSYHKCVHGAANSISPQLG 1193
Query: 382 NFYKAKYLR 356
++ K Y R
Sbjct: 1194 SYLKKLYHR 1202
>gi|308080362|ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit
[Zea mays]
Length = 1444
Score = 66 bits (160), Expect = 2e-009
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FH KIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434
Query: 382 NFYKAKYLR 356
++ K Y R
Sbjct: 1435 SYLKKLYYR 1443
>gi|219662986|gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest
subunit rpd1-8 [Zea mays]
Length = 1444
Score = 66 bits (160), Expect = 2e-009
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FH KIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434
Query: 382 NFYKAKYLR 356
++ K Y R
Sbjct: 1435 SYLKKLYYR 1443
>gi|238013416|gb|ACR37743.1| unknown [Zea mays]
Length = 101
Score = 66 bits (160), Expect = 2e-009
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FH KIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 32 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 91
Query: 382 NFYKAKYLR 356
++ K Y R
Sbjct: 92 SYLKKLYYR 100
>gi|115460018|ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japonica Group]
Length = 449
Score = 63 bits (152), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H ++RCF V+R D TT DFSY+KCVLGA I+P+
Sbjct: 373 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE 430
>gi|116309922|emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
Length = 1407
Score = 63 bits (152), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H ++RCF V+R D TT DFSY+KCVLGA I+P+
Sbjct: 1331 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE 1388
>gi|115480591|ref|NP_001063889.1| Os09g0555200 [Oryza sativa Japonica Group]
Length = 318
Score = 63 bits (151), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H N+RCF V R+D T+ DFSY+KCVLGA I+P+
Sbjct: 242 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 299
>gi|215736910|dbj|BAG95839.1| unnamed protein product [Oryza sativa Japonica
Group]
Length = 158
Score = 63 bits (151), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H N+RCF V R+D T+ DFSY+KCVLGA I+P+
Sbjct: 82 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 139
>gi|218202606|gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica
Group]
Length = 1384
Score = 63 bits (151), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H N+RCF V R+D T+ DFSY+KCVLGA I+P+
Sbjct: 1308 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 1365
>gi|222642066|gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa
Japonica Group]
Length = 1384
Score = 63 bits (151), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H N+RCF V R+D T+ DFSY+KCVLGA I+P+
Sbjct: 1308 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 1365
>gi|302781186|ref|XP_002972367.1| hypothetical protein SELMODRAFT_413061
[Selaginella moellendorffii]
Length = 1444
Score = 63 bits (151), Expect = 2e-008
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVL----GATEIIAP 392
+HP D K+G G + I+V N RCF +VR DG+ EDFSYH+C+L G T +
Sbjct: 1328 YHPMMDSKVGCGVRHIRVDNHHSFGGRCFHIVRLDGSVEDFSYHRCLLERIKGNTVL--- 1384
Query: 391 KRVNFYKAKYLRKGAGQA 338
V YK KY++ G+A
Sbjct: 1385 --VQRYKKKYMKGKNGRA 1400
>gi|168011278|ref|XP_001758330.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 96
Score = 61 bits (147), Expect = 7e-008
Identities = 34/74 (45%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = -3
Query: 556 HPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVN 380
HP + KIG G IK+ +S RCF +VRTDGT DFSYHKCV I P V+
Sbjct: 23 HPKSEEKIGCGIDYIKINRHSTFNKVRCFWIVRTDGTETDFSYHKCVKAKIAIEYPNFVD 82
Query: 379 FYKAKYLRKGAGQA 338
Y A + K QA
Sbjct: 83 SYDAVHRGKSIHQA 96
>gi|302780129|ref|XP_002971839.1| hypothetical protein SELMODRAFT_441655
[Selaginella moellendorffii]
Length = 1438
Score = 61 bits (147), Expect = 7e-008
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVL----GATEIIAP 392
+HP D K+G G + I+V N RCF +VR DG+ EDFSYHKC+L G T ++
Sbjct: 1325 YHPMMDSKVGCGVRHIRVDNHHSFGGRCFHIVRLDGSVEDFSYHKCLLERIKGNTVLVQR 1384
Query: 391 KRVNFYKAKYLRK 353
+ F K RK
Sbjct: 1385 YKKKFMGGKNGRK 1397
>gi|303277021|ref|XP_003057804.1| predicted protein [Micromonas pusilla
CCMP1545]
Length = 156
Score = 57 bits (136), Expect = 1e-006
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -3
Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCV 419
HP+ + KIG G + ++ RC+ V+RTDGTTEDFSY KCV
Sbjct: 34 HPDAEKKIGSGIKAFQIRTHPEHETRCYTVIRTDGTTEDFSYRKCV 79
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,366,029,682
Number of Sequences: 15229318
Number of Extensions: 798366029682
Number of Successful Extensions: 240520672
Number of sequences better than 0.0: 0
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