BLASTX 7.6.2
Query= UN74272 /QuerySize=565
(564 letters)
Database: UniProt/TrEMBL;
11,397,958 sequences; 3,661,877,547 total letters
Score E
Sequences producing significant alignments: (bits) Value
tr|Q9LQ02|Q9LQ02_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 115 3e-024
tr|B9GKP9|B9GKP9_POPTR DNA-directed RNA polymerase OS=Populus tr... 79 2e-013
tr|B9RC12|B9RC12_RICCO DNA-directed RNA polymerase OS=Ricinus co... 74 9e-012
tr|C5YE51|C5YE51_SORBI DNA-directed RNA polymerase OS=Sorghum bi... 68 5e-010
tr|C0JR65|C0JR65_MAIZE DNA-directed RNA polymerase OS=Zea mays P... 66 1e-009
tr|C0JR68|C0JR68_MAIZE DNA-directed RNA polymerase OS=Zea mays P... 66 1e-009
tr|C4J993|C4J993_MAIZE Putative uncharacterized protein OS=Zea m... 66 1e-009
tr|Q01JX0|Q01JX0_ORYSA DNA-directed RNA polymerase OS=Oryza sati... 63 1e-008
tr|Q0JAW4|Q0JAW4_ORYSJ Os04g0572600 protein OS=Oryza sativa subs... 63 1e-008
tr|B7ETZ2|B7ETZ2_ORYSJ cDNA clone:J033116N09, full insert sequen... 63 2e-008
tr|B8BED0|B8BED0_ORYSI DNA-directed RNA polymerase OS=Oryza sati... 63 2e-008
tr|B9G500|B9G500_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 63 2e-008
tr|Q0IZR2|Q0IZR2_ORYSJ Os09g0555200 protein (Fragment) OS=Oryza ... 63 2e-008
tr|A9RW73|A9RW73_PHYPA Predicted protein (Fragment) OS=Physcomit... 61 5e-008
tr|C1MQR3|C1MQR3_9CHLO Predicted protein OS=Micromonas pusilla C... 57 9e-007
tr|Q1L5X6|Q1L5X6_SOLLC DNA-directed RNA polymerase (Fragment) OS... 56 2e-006
tr|B6T6D8|B6T6D8_MAIZE DCL protein OS=Zea mays PE=2 SV=1 55 3e-006
tr|C1DYA3|C1DYA3_9CHLO Predicted protein OS=Micromonas sp. RCC29... 54 6e-006
>tr|Q9LQ02|Q9LQ02_ARATH DNA-directed RNA polymerase OS=Arabidopsis thaliana
GN=RPD1 PE=2 SV=1
Length = 1453
Score = 115 bits (287), Expect = 3e-024
Identities = 52/74 (70%), Positives = 63/74 (85%)
Frame = -3
Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 377
HPN KIGPG +GI+VA SKHG++ CFEVVR DGT EDFSYHKCVLGAT+IIAPK++NF
Sbjct: 1374 HPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNF 1433
Query: 376 YKAKYLRKGAGQAG 335
YK+KYL+ G ++G
Sbjct: 1434 YKSKYLKNGTLESG 1447
>tr|B9GKP9|B9GKP9_POPTR DNA-directed RNA polymerase OS=Populus trichocarpa
GN=NRPD901 PE=3 SV=1
Length = 1517
Score = 79 bits (193), Expect = 2e-013
Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVAN-SKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FHP RD KIG G + IKV N ++ + RCF +VRTDGT EDFSY KC+ A EIIAP+R
Sbjct: 1431 FHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEIIAPQRA 1490
Query: 382 NFYKAKYL 359
Y KYL
Sbjct: 1491 KRYCEKYL 1498
>tr|B9RC12|B9RC12_RICCO DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1683300 PE=3 SV=1
Length = 1475
Score = 74 bits (179), Expect = 9e-012
Identities = 34/59 (57%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKR 386
FHP ++ KIG GF+ IKV + ++ ++RCF +VR+DGT EDFSY KCV GA EIIAP +
Sbjct: 1333 FHPRKEEKIGSGFKDIKVVKHPEYQDSRCFSLVRSDGTIEDFSYRKCVYGALEIIAPHK 1391
>tr|C5YE51|C5YE51_SORBI DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb06g025933 PE=3 SV=1
Length = 1203
Score = 68 bits (164), Expect = 5e-010
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FHP KIG G + IKV N H RCF ++R D TTEDFSYHKCV GA I+P+
Sbjct: 1134 FHPRGAEKIGVGVREIKVGLNPNHPGTRCFILLRNDDTTEDFSYHKCVHGAANSISPQLG 1193
Query: 382 NFYKAKYLR 356
++ K Y R
Sbjct: 1194 SYLKKLYHR 1202
>tr|C0JR65|C0JR65_MAIZE DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 66 bits (160), Expect = 1e-009
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FH KIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434
Query: 382 NFYKAKYLR 356
++ K Y R
Sbjct: 1435 SYLKKLYYR 1443
>tr|C0JR68|C0JR68_MAIZE DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 1444
Score = 66 bits (160), Expect = 1e-009
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FH KIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434
Query: 382 NFYKAKYLR 356
++ K Y R
Sbjct: 1435 SYLKKLYYR 1443
>tr|C4J993|C4J993_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1
Length = 101
Score = 66 bits (160), Expect = 1e-009
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
FH KIG G + IK+ N H RCF ++R D TTEDFSYHKCV GA + I+P+
Sbjct: 32 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 91
Query: 382 NFYKAKYLR 356
++ K Y R
Sbjct: 92 SYLKKLYYR 100
>tr|Q01JX0|Q01JX0_ORYSA DNA-directed RNA polymerase OS=Oryza sativa
GN=OSIGBa0147H17.3 PE=3 SV=1
Length = 1407
Score = 63 bits (152), Expect = 1e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H ++RCF V+R D TT DFSY+KCVLGA I+P+
Sbjct: 1331 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE 1388
>tr|Q0JAW4|Q0JAW4_ORYSJ Os04g0572600 protein OS=Oryza sativa subsp. japonica
GN=Os04g0572600 PE=4 SV=1
Length = 449
Score = 63 bits (152), Expect = 1e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H ++RCF V+R D TT DFSY+KCVLGA I+P+
Sbjct: 373 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE 430
>tr|B7ETZ2|B7ETZ2_ORYSJ cDNA clone:J033116N09, full insert sequence OS=Oryza
sativa subsp. japonica PE=2 SV=1
Length = 158
Score = 63 bits (151), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H N+RCF V R+D T+ DFSY+KCVLGA I+P+
Sbjct: 82 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 139
>tr|B8BED0|B8BED0_ORYSI DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_32338 PE=3 SV=1
Length = 1384
Score = 63 bits (151), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H N+RCF V R+D T+ DFSY+KCVLGA I+P+
Sbjct: 1308 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 1365
>tr|B9G500|B9G500_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_30285 PE=3 SV=1
Length = 1384
Score = 63 bits (151), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H N+RCF V R+D T+ DFSY+KCVLGA I+P+
Sbjct: 1308 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 1365
>tr|Q0IZR2|Q0IZR2_ORYSJ Os09g0555200 protein (Fragment) OS=Oryza sativa subsp.
japonica GN=Os09g0555200 PE=4 SV=1
Length = 318
Score = 63 bits (151), Expect = 2e-008
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -3
Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
FHP KIG G + IK+ N H N+RCF V R+D T+ DFSY+KCVLGA I+P+
Sbjct: 242 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 299
>tr|A9RW73|A9RW73_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_120267 PE=4 SV=1
Length = 96
Score = 61 bits (147), Expect = 5e-008
Identities = 34/74 (45%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = -3
Query: 556 HPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVN 380
HP + KIG G IK+ +S RCF +VRTDGT DFSYHKCV I P V+
Sbjct: 23 HPKSEEKIGCGIDYIKINRHSTFNKVRCFWIVRTDGTETDFSYHKCVKAKIAIEYPNFVD 82
Query: 379 FYKAKYLRKGAGQA 338
Y A + K QA
Sbjct: 83 SYDAVHRGKSIHQA 96
>tr|C1MQR3|C1MQR3_9CHLO Predicted protein OS=Micromonas pusilla CCMP1545
GN=MICPUCDRAFT_16484 PE=4 SV=1
Length = 156
Score = 57 bits (136), Expect = 9e-007
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -3
Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCV 419
HP+ + KIG G + ++ RC+ V+RTDGTTEDFSY KCV
Sbjct: 34 HPDAEKKIGSGIKAFQIRTHPEHETRCYTVIRTDGTTEDFSYRKCV 79
>tr|Q1L5X6|Q1L5X6_SOLLC DNA-directed RNA polymerase (Fragment) OS=Solanum
lycopersicum GN=RPD1 PE=2 SV=1
Length = 1138
Score = 56 bits (133), Expect = 2e-006
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = -3
Query: 556 HPNRDGKIGPGF-QGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKR 386
HP R+ KIG G + IK+ + + +RCF VVR+D T EDFSY KC+ A E+IAP++
Sbjct: 1068 HPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQK 1126
>tr|B6T6D8|B6T6D8_MAIZE DCL protein OS=Zea mays PE=2 SV=1
Length = 191
Score = 55 bits (131), Expect = 3e-006
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -3
Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 377
HP + KIG G GI V +RC VVRT+G EDFSYHKC+ + K+
Sbjct: 103 HPRAEEKIGCGLDGIMVDRHPEFKSRCLFVVRTNGDWEDFSYHKCLRAYLQ----KKYPS 158
Query: 376 YKAKYLRK 353
Y K+L+K
Sbjct: 159 YSDKFLKK 166
>tr|C1DYA3|C1DYA3_9CHLO Predicted protein OS=Micromonas sp. RCC299
GN=MICPUN_56008 PE=4 SV=1
Length = 218
Score = 54 bits (129), Expect = 6e-006
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -3
Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCV 419
HP + KIG G + ++ ++RC+ VVRTDGT EDFSY KCV
Sbjct: 100 HPEAEKKIGCGIKSFQIRTHPEHDSRCYMVVRTDGTCEDFSYRKCV 145
Database: UniProt/TrEMBL
Posted date: Sat Aug 07 14:51:12 2010
Number of letters in database: 3,661,877,547
Number of sequences in database: 11,397,958
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,808,665,924,693
Number of Sequences: 11397958
Number of Extensions: 4808665924693
Number of Successful Extensions: 1806772657
Number of sequences better than 0.0: 0
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