Library    |     Search    |     Batch query    |     SNP    |     SSR  

TrEMBL blast output of UN74272


BLASTX 7.6.2

Query= UN74272 /QuerySize=565
        (564 letters)

Database: UniProt/TrEMBL;
          11,397,958 sequences; 3,661,877,547 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

tr|Q9LQ02|Q9LQ02_ARATH DNA-directed RNA polymerase OS=Arabidopsi...    115   3e-024
tr|B9GKP9|B9GKP9_POPTR DNA-directed RNA polymerase OS=Populus tr...     79   2e-013
tr|B9RC12|B9RC12_RICCO DNA-directed RNA polymerase OS=Ricinus co...     74   9e-012
tr|C5YE51|C5YE51_SORBI DNA-directed RNA polymerase OS=Sorghum bi...     68   5e-010
tr|C0JR65|C0JR65_MAIZE DNA-directed RNA polymerase OS=Zea mays P...     66   1e-009
tr|C0JR68|C0JR68_MAIZE DNA-directed RNA polymerase OS=Zea mays P...     66   1e-009
tr|C4J993|C4J993_MAIZE Putative uncharacterized protein OS=Zea m...     66   1e-009
tr|Q01JX0|Q01JX0_ORYSA DNA-directed RNA polymerase OS=Oryza sati...     63   1e-008
tr|Q0JAW4|Q0JAW4_ORYSJ Os04g0572600 protein OS=Oryza sativa subs...     63   1e-008
tr|B7ETZ2|B7ETZ2_ORYSJ cDNA clone:J033116N09, full insert sequen...     63   2e-008
tr|B8BED0|B8BED0_ORYSI DNA-directed RNA polymerase OS=Oryza sati...     63   2e-008
tr|B9G500|B9G500_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...     63   2e-008
tr|Q0IZR2|Q0IZR2_ORYSJ Os09g0555200 protein (Fragment) OS=Oryza ...     63   2e-008
tr|A9RW73|A9RW73_PHYPA Predicted protein (Fragment) OS=Physcomit...     61   5e-008
tr|C1MQR3|C1MQR3_9CHLO Predicted protein OS=Micromonas pusilla C...     57   9e-007
tr|Q1L5X6|Q1L5X6_SOLLC DNA-directed RNA polymerase (Fragment) OS...     56   2e-006
tr|B6T6D8|B6T6D8_MAIZE DCL protein OS=Zea mays PE=2 SV=1                55   3e-006
tr|C1DYA3|C1DYA3_9CHLO Predicted protein OS=Micromonas sp. RCC29...     54   6e-006

>tr|Q9LQ02|Q9LQ02_ARATH DNA-directed RNA polymerase OS=Arabidopsis thaliana
        GN=RPD1 PE=2 SV=1

          Length = 1453

 Score =  115 bits (287), Expect = 3e-024
 Identities = 52/74 (70%), Positives = 63/74 (85%)
 Frame = -3

Query:  556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 377
            HPN   KIGPG +GI+VA SKHG++ CFEVVR DGT EDFSYHKCVLGAT+IIAPK++NF
Sbjct: 1374 HPNSVEKIGPGVKGIRVAKSKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNF 1433

Query:  376 YKAKYLRKGAGQAG 335
            YK+KYL+ G  ++G
Sbjct: 1434 YKSKYLKNGTLESG 1447

>tr|B9GKP9|B9GKP9_POPTR DNA-directed RNA polymerase OS=Populus trichocarpa
        GN=NRPD901 PE=3 SV=1

          Length = 1517

 Score =  79 bits (193), Expect = 2e-013
 Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = -3

Query:  559 FHPNRDGKIGPGFQGIKVAN-SKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
            FHP RD KIG G + IKV N  ++ + RCF +VRTDGT EDFSY KC+  A EIIAP+R 
Sbjct: 1431 FHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEIIAPQRA 1490

Query:  382 NFYKAKYL 359
              Y  KYL
Sbjct: 1491 KRYCEKYL 1498

>tr|B9RC12|B9RC12_RICCO DNA-directed RNA polymerase OS=Ricinus communis
        GN=RCOM_1683300 PE=3 SV=1

          Length = 1475

 Score =  74 bits (179), Expect = 9e-012
 Identities = 34/59 (57%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
 Frame = -3

Query:  559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKR 386
            FHP ++ KIG GF+ IKV  + ++ ++RCF +VR+DGT EDFSY KCV GA EIIAP +
Sbjct: 1333 FHPRKEEKIGSGFKDIKVVKHPEYQDSRCFSLVRSDGTIEDFSYRKCVYGALEIIAPHK 1391

>tr|C5YE51|C5YE51_SORBI DNA-directed RNA polymerase OS=Sorghum bicolor
        GN=Sb06g025933 PE=3 SV=1

          Length = 1203

 Score =  68 bits (164), Expect = 5e-010
 Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = -3

Query:  559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
            FHP    KIG G + IKV  N  H   RCF ++R D TTEDFSYHKCV GA   I+P+  
Sbjct: 1134 FHPRGAEKIGVGVREIKVGLNPNHPGTRCFILLRNDDTTEDFSYHKCVHGAANSISPQLG 1193

Query:  382 NFYKAKYLR 356
            ++ K  Y R
Sbjct: 1194 SYLKKLYHR 1202

>tr|C0JR65|C0JR65_MAIZE DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1

          Length = 1444

 Score =  66 bits (160), Expect = 1e-009
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = -3

Query:  559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
            FH     KIG G + IK+  N  H   RCF ++R D TTEDFSYHKCV GA + I+P+  
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434

Query:  382 NFYKAKYLR 356
            ++ K  Y R
Sbjct: 1435 SYLKKLYYR 1443

>tr|C0JR68|C0JR68_MAIZE DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1

          Length = 1444

 Score =  66 bits (160), Expect = 1e-009
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = -3

Query:  559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
            FH     KIG G + IK+  N  H   RCF ++R D TTEDFSYHKCV GA + I+P+  
Sbjct: 1375 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 1434

Query:  382 NFYKAKYLR 356
            ++ K  Y R
Sbjct: 1435 SYLKKLYYR 1443

>tr|C4J993|C4J993_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1

          Length = 101

 Score =  66 bits (160), Expect = 1e-009
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = -3

Query: 559 FHPNRDGKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRV 383
           FH     KIG G + IK+  N  H   RCF ++R D TTEDFSYHKCV GA + I+P+  
Sbjct:  32 FHSRGAEKIGVGVREIKIGLNPSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLG 91

Query: 382 NFYKAKYLR 356
           ++ K  Y R
Sbjct:  92 SYLKKLYYR 100

>tr|Q01JX0|Q01JX0_ORYSA DNA-directed RNA polymerase OS=Oryza sativa
        GN=OSIGBa0147H17.3 PE=3 SV=1

          Length = 1407

 Score =  63 bits (152), Expect = 1e-008
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = -3

Query:  559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
            FHP    KIG G + IK+  N  H ++RCF V+R D TT DFSY+KCVLGA   I+P+
Sbjct: 1331 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE 1388

>tr|Q0JAW4|Q0JAW4_ORYSJ Os04g0572600 protein OS=Oryza sativa subsp. japonica
        GN=Os04g0572600 PE=4 SV=1

          Length = 449

 Score =  63 bits (152), Expect = 1e-008
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = -3

Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
           FHP    KIG G + IK+  N  H ++RCF V+R D TT DFSY+KCVLGA   I+P+
Sbjct: 373 FHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYNKCVLGAANSISPE 430

>tr|B7ETZ2|B7ETZ2_ORYSJ cDNA clone:J033116N09, full insert sequence OS=Oryza
        sativa subsp. japonica PE=2 SV=1

          Length = 158

 Score =  63 bits (151), Expect = 2e-008
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = -3

Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
           FHP    KIG G + IK+  N  H N+RCF V R+D T+ DFSY+KCVLGA   I+P+
Sbjct:  82 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 139

>tr|B8BED0|B8BED0_ORYSI DNA-directed RNA polymerase OS=Oryza sativa subsp.
        indica GN=OsI_32338 PE=3 SV=1

          Length = 1384

 Score =  63 bits (151), Expect = 2e-008
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = -3

Query:  559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
            FHP    KIG G + IK+  N  H N+RCF V R+D T+ DFSY+KCVLGA   I+P+
Sbjct: 1308 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 1365

>tr|B9G500|B9G500_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp.
        japonica GN=OsJ_30285 PE=3 SV=1

          Length = 1384

 Score =  63 bits (151), Expect = 2e-008
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = -3

Query:  559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
            FHP    KIG G + IK+  N  H N+RCF V R+D T+ DFSY+KCVLGA   I+P+
Sbjct: 1308 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 1365

>tr|Q0IZR2|Q0IZR2_ORYSJ Os09g0555200 protein (Fragment) OS=Oryza sativa subsp.
        japonica GN=Os09g0555200 PE=4 SV=1

          Length = 318

 Score =  63 bits (151), Expect = 2e-008
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = -3

Query: 559 FHPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPK 389
           FHP    KIG G + IK+  N  H N+RCF V R+D T+ DFSY+KCVLGA   I+P+
Sbjct: 242 FHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSISPE 299

>tr|A9RW73|A9RW73_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens
        subsp. patens GN=PHYPADRAFT_120267 PE=4 SV=1

          Length = 96

 Score =  61 bits (147), Expect = 5e-008
 Identities = 34/74 (45%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = -3

Query: 556 HPNRDGKIGPGFQGIKV-ANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVN 380
           HP  + KIG G   IK+  +S     RCF +VRTDGT  DFSYHKCV     I  P  V+
Sbjct:  23 HPKSEEKIGCGIDYIKINRHSTFNKVRCFWIVRTDGTETDFSYHKCVKAKIAIEYPNFVD 82

Query: 379 FYKAKYLRKGAGQA 338
            Y A +  K   QA
Sbjct:  83 SYDAVHRGKSIHQA 96

>tr|C1MQR3|C1MQR3_9CHLO Predicted protein OS=Micromonas pusilla CCMP1545
        GN=MICPUCDRAFT_16484 PE=4 SV=1

          Length = 156

 Score =  57 bits (136), Expect = 9e-007
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = -3

Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCV 419
           HP+ + KIG G +  ++        RC+ V+RTDGTTEDFSY KCV
Sbjct:  34 HPDAEKKIGSGIKAFQIRTHPEHETRCYTVIRTDGTTEDFSYRKCV 79

>tr|Q1L5X6|Q1L5X6_SOLLC DNA-directed RNA polymerase (Fragment) OS=Solanum
        lycopersicum GN=RPD1 PE=2 SV=1

          Length = 1138

 Score =  56 bits (133), Expect = 2e-006
 Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = -3

Query:  556 HPNRDGKIGPGF-QGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKR 386
            HP R+ KIG G  + IK+  + +   +RCF VVR+D T EDFSY KC+  A E+IAP++
Sbjct: 1068 HPRRNEKIGKGAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQK 1126

>tr|B6T6D8|B6T6D8_MAIZE DCL protein OS=Zea mays PE=2 SV=1

          Length = 191

 Score =  55 bits (131), Expect = 3e-006
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = -3

Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNF 377
           HP  + KIG G  GI V       +RC  VVRT+G  EDFSYHKC+    +    K+   
Sbjct: 103 HPRAEEKIGCGLDGIMVDRHPEFKSRCLFVVRTNGDWEDFSYHKCLRAYLQ----KKYPS 158

Query: 376 YKAKYLRK 353
           Y  K+L+K
Sbjct: 159 YSDKFLKK 166

>tr|C1DYA3|C1DYA3_9CHLO Predicted protein OS=Micromonas sp. RCC299
        GN=MICPUN_56008 PE=4 SV=1

          Length = 218

 Score =  54 bits (129), Expect = 6e-006
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = -3

Query: 556 HPNRDGKIGPGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCV 419
           HP  + KIG G +  ++      ++RC+ VVRTDGT EDFSY KCV
Sbjct: 100 HPEAEKKIGCGIKSFQIRTHPEHDSRCYMVVRTDGTCEDFSYRKCV 145

  Database: UniProt/TrEMBL
    Posted date:  Sat Aug 07 14:51:12 2010
  Number of letters in database: 3,661,877,547
  Number of sequences in database:  11,397,958

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,808,665,924,693
Number of Sequences: 11397958
Number of Extensions: 4808665924693
Number of Successful Extensions: 1806772657
Number of sequences better than 0.0: 0