Library    |     Search    |     Batch query    |     SNP    |     SSR  

GenBank blast output of UN74362


BLASTX 7.6.2

Query= UN74362 /QuerySize=783
        (782 letters)

Database: GenBank nr;
          15,229,318 sequences; 5,219,829,378 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

gi|297814588|ref|XP_002875177.1| kelch repeat-containing F-box f...     72   8e-011
gi|15227057|ref|NP_178390.1| F-box/kelch-repeat protein SKIP11 [...     71   1e-010
gi|22655058|gb|AAM98120.1| predicted protein [Arabidopsis thaliana]     71   1e-010

>gi|297814588|ref|XP_002875177.1| kelch repeat-containing F-box family protein
        [Arabidopsis lyrata subsp. lyrata]

          Length = 464

 Score =  72 bits (175), Expect = 8e-011
 Identities = 46/80 (57%), Positives = 48/80 (60%), Gaps = 19/80 (23%)
 Frame = +3

Query: 402 MLENRSPDSCLSSRVFSEEE------------EEDDDKLINGKGALEVVVVGGGGSEMIR 545
           MLE+RSPDSCL +RVFS                EDDDKL NGK  LEVV         IR
Sbjct:   1 MLEDRSPDSCLITRVFSSSRLSESNWSKSYMYPEDDDKLGNGKRPLEVV-------GEIR 53

Query: 546 PTKSLKLMGFSITYHSDSPD 605
            TKSLKLMGFSITY SDS D
Sbjct:  54 QTKSLKLMGFSITYDSDSSD 73


 Score =  62 bits (148), Expect = 1e-007
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +3

Query: 594 DSPDSHSLFNEIGRDTSIDCLLRCSSLTTPPLLP-**DFRSLVKSGDIYKLR 746
           DS DSHSL NEIGRD SIDCL+RCS      +     +FRSLVKSG+IY+LR
Sbjct: 108 DSTDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLR 159

>gi|15227057|ref|NP_178390.1| F-box/kelch-repeat protein SKIP11 [Arabidopsis
        thaliana]

          Length = 467

 Score =  71 bits (173), Expect = 1e-010
 Identities = 46/81 (56%), Positives = 50/81 (61%), Gaps = 20/81 (24%)
 Frame = +3

Query: 402 MLENRSPDSCLSSRVFSEEE------------EEDDDKLI-NGKGALEVVVVGGGGSEMI 542
           MLE+RSPDSCLS+RVFS                EDDDKL+ NGK ALEVV         +
Sbjct:   1 MLEDRSPDSCLSTRVFSSSRLSESNWSNSYMYPEDDDKLLGNGKRALEVV-------GEV 53

Query: 543 RPTKSLKLMGFSITYHSDSPD 605
           R TKSLKLMGFSI Y SDS D
Sbjct:  54 RQTKSLKLMGFSIIYDSDSSD 74


 Score =  62 bits (148), Expect = 1e-007
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +3

Query: 594 DSPDSHSLFNEIGRDTSIDCLLRCSSLTTPPLLP-**DFRSLVKSGDIYKLR 746
           DS DSHSL NEIGRD SIDCL+RCS      +     +FRSLVKSG+IY+LR
Sbjct: 110 DSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLR 161

>gi|22655058|gb|AAM98120.1| predicted protein [Arabidopsis thaliana]

          Length = 467

 Score =  71 bits (173), Expect = 1e-010
 Identities = 46/81 (56%), Positives = 50/81 (61%), Gaps = 20/81 (24%)
 Frame = +3

Query: 402 MLENRSPDSCLSSRVFSEEE------------EEDDDKLI-NGKGALEVVVVGGGGSEMI 542
           MLE+RSPDSCLS+RVFS                EDDDKL+ NGK ALEVV         +
Sbjct:   1 MLEDRSPDSCLSTRVFSSSRLSESNWSNSYMYPEDDDKLLGNGKRALEVV-------GEV 53

Query: 543 RPTKSLKLMGFSITYHSDSPD 605
           R TKSLKLMGFSI Y SDS D
Sbjct:  54 RQTKSLKLMGFSIIYDSDSSD 74


 Score =  62 bits (148), Expect = 1e-007
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +3

Query: 594 DSPDSHSLFNEIGRDTSIDCLLRCSSLTTPPLLP-**DFRSLVKSGDIYKLR 746
           DS DSHSL NEIGRD SIDCL+RCS      +     +FRSLVKSG+IY+LR
Sbjct: 110 DSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLR 161

  Database: GenBank nr
    Posted date:  Thu Sep 08 23:06:31 2011
  Number of letters in database: 5,219,829,378
  Number of sequences in database:  15,229,318

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,366,029,682
Number of Sequences: 15229318
Number of Extensions: 798366029682
Number of Successful Extensions: 240520672
Number of sequences better than 0.0: 0