BLASTX 7.6.2
Query= UN74558 /QuerySize=486
(485 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O48626|ZW10_ARATH Centromere/kinetochore protein zw10 homolog... 218 2e-056
sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1... 55 2e-007
sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1... 53 9e-007
sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II subunit RPB1... 51 3e-006
sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1... 51 3e-006
sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1... 50 6e-006
sp|P98088|MUC5A_HUMAN Mucin-5AC (Fragments) OS=Homo sapiens GN=M... 49 1e-005
>sp|O48626|ZW10_ARATH Centromere/kinetochore protein zw10 homolog OS=Arabidopsis
thaliana GN=ZW10 PE=2 SV=1
Length = 742
Score = 218 bits (554), Expect = 2e-056
Identities = 111/137 (81%), Positives = 126/137 (91%), Gaps = 1/137 (0%)
Frame = +2
Query: 74 MSEIDALFESINVRDLLSGHDLNDPTTPLSAPDLRLLINRLDSHSLRIKSKVQSYLISHR 253
M EIDALFESINVRDLL+GHDLNDPTTPLSAPDLRLLINRL+SHSLRIKSKVQSYL++H
Sbjct: 1 MPEIDALFESINVRDLLAGHDLNDPTTPLSAPDLRLLINRLESHSLRIKSKVQSYLVAHH 60
Query: 254 SEFSHLFSTCQDAVSRTRLISDDVSDVVKLVSDGSVDVVEIREVVDEIREKTREVRVKRE 433
S+FS LFS CQD VSRTRLISDDVSDV++LVSD +D VEIR VVDEI EKT+EV++KRE
Sbjct: 61 SDFSELFSLCQDTVSRTRLISDDVSDVLQLVSDRPID-VEIRSVVDEITEKTKEVKLKRE 119
Query: 434 SLGLVSAVVGVCEALRE 484
SL LV+A+VG+CEAL+E
Sbjct: 120 SLDLVNAIVGICEALQE 136
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1
OS=Caenorhabditis elegans GN=ama-1 PE=1 SV=2
Length = 1852
Score = 55 bits (130), Expect = 2e-007
Identities = 46/117 (39%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Frame = +3
Query: 18 SETAIAAPTSSSSSTVPP--PCRRSTRYSNRSTSETFSPDTISTIRRLHYQLPISVSS*T 191
S T+ AA S S + P P T S TS ++SP + S P S S +
Sbjct: 1597 SPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-S 1655
Query: 192 V*TPTPSGSSPKSSPTSSPTAPSSPTFSPPAKTPSPGPA*SPTTSPMS*NWSPTVPS 362
+P+ S SSP SP+S +P+SPT+SP + T SP SPT SP S +SPT PS
Sbjct: 1656 PSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPT---SPTYSPTSPTYSPTSPS 1709
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1
OS=Caenorhabditis briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 53 bits (125), Expect = 9e-007
Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Frame = +3
Query: 36 APTSSSSSTVPP---------PCRRSTRYSNRSTSETFSPDTISTIRRLHYQLPISVSS* 188
+PTS S S P P T S TS ++SP + S P S S
Sbjct: 1593 SPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1651
Query: 189 TV*TPTPSGSSPKSSPTSSPTAPSSPTFSPPAKTPSPGPA*SPTTSPMS*NWSPTVPS 362
+ +P+ S +SP SPTS +PSSP +SP + T SP SPT SP S +SPT P+
Sbjct: 1652 SPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPT---SPTYSPTSPTYSPTSPT 1706
>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II subunit RPB1 (Fragment)
OS=Cricetulus griseus GN=POLR2A PE=3 SV=1
Length = 467
Score = 51 bits (121), Expect = 3e-006
Identities = 44/109 (40%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Frame = +3
Query: 39 PTSSS-SSTVPPPCRRSTRYSNRSTSETFSPDTISTIRRLHYQLPISVSS*TV*TPTPSG 215
PTS S T P S +YS TS T+SP T P S V TPT
Sbjct: 352 PTSPKYSPTSPKYSPTSPKYS--PTSPTYSPTTPKYSPTSPTYSPTS----PVYTPT--- 402
Query: 216 SSPKSSPTSSPTAPSSPTFSPPAKTPSPGPA*SPTTSPMS*NWSPTVPS 362
SPK SPTS +P+SP +SP + T SP T SP S +SPT P+
Sbjct: 403 -SPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPT 450
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo
sapiens GN=POLR2A PE=1 SV=2
Length = 1970
Score = 51 bits (121), Expect = 3e-006
Identities = 44/109 (40%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Frame = +3
Query: 39 PTSSS-SSTVPPPCRRSTRYSNRSTSETFSPDTISTIRRLHYQLPISVSS*TV*TPTPSG 215
PTS S T P S +YS TS T+SP T P S V TPT
Sbjct: 1855 PTSPKYSPTSPKYSPTSPKYS--PTSPTYSPTTPKYSPTSPTYSPTS----PVYTPT--- 1905
Query: 216 SSPKSSPTSSPTAPSSPTFSPPAKTPSPGPA*SPTTSPMS*NWSPTVPS 362
SPK SPTS +P+SP +SP + T SP T SP S +SPT P+
Sbjct: 1906 -SPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPT 1953
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus
musculus GN=Polr2a PE=1 SV=3
Length = 1970
Score = 50 bits (118), Expect = 6e-006
Identities = 41/103 (39%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Frame = +3
Query: 54 SSTVPPPCRRSTRYSNRSTSETFSPDTISTIRRLHYQLPISVSS*TV*TPTPSGSSPKSS 233
S T P S +YS TS T+SP T P S V TPT SPK S
Sbjct: 1861 SPTSPKYSPTSPKYS--PTSPTYSPTTPKYSPTSPTYSPTS----PVYTPT----SPKYS 1910
Query: 234 PTSSPTAPSSPTFSPPAKTPSPGPA*SPTTSPMS*NWSPTVPS 362
PTS +P+SP +SP + T SP T SP S +SPT P+
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPT 1953
>sp|P98088|MUC5A_HUMAN Mucin-5AC (Fragments) OS=Homo sapiens GN=MUC5AC PE=1
SV=3
Length = 5030
Score = 49 bits (116), Expect = 1e-005
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Frame = +3
Query: 24 TAIAAPTSSSSSTVPPPCRRSTRYSNRSTSETFSPDTISTIRRLHYQLPISVSS*TV*TP 203
+A + T+S T P P ++ S +TS T +P T +T +S T
Sbjct: 2398 SAPTSSTTSGPGTTPSPVPTTSITSAPTTSTTSAPTTSTTSAPTTSTTSAPTTSTTSAPT 2457
Query: 204 TPSGSSPKSSPTSSP-----TAPSSPTFSPPAKTPSPGPA*SPTTSPMS*NWSPTVPSTL 368
T + S+P SS TS+P +A ++ S P TPSP P S T++P + S ST+
Sbjct: 2458 TSTTSTPTSSTTSTPQTSTTSASTTSITSGPGTTPSPVPTTSTTSAPTTSTTSAATTSTI 2517
Query: 369 S 371
S
Sbjct: 2518 S 2518
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,066,761,093
Number of Sequences: 518415
Number of Extensions: 246066761093
Number of Successful Extensions: 1592770963
Number of sequences better than 0.0: 0
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