BLASTX 7.6.2
Query= UN74592 /QuerySize=649
(648 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabid... 182 4e-044
gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsi... 151 1e-034
gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis ... 63 3e-008
gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsi... 63 3e-008
gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabid... 60 2e-007
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 356
Score = 182 bits (461), Expect = 4e-044
Identities = 119/206 (57%), Positives = 135/206 (65%), Gaps = 29/206 (14%)
Frame = +3
Query: 12 KVVARVLSRFRPKEVRRREQHHSRR---RAIRQD--TTTTRDFLCEKLRLISPYTEEASS 176
+VVARVLSRFRPKEV+RRE + SRR + IRQ+ TTTTRD LCE LR I+ YT EASS
Sbjct: 170 EVVARVLSRFRPKEVKRREPNQSRRTVIKTIRQNTTTTTTRDLLCENLRSINLYTNEASS 229
Query: 177 SSSSAKHNQTLPPRFWSSTTDLQQQQECKVKSLLEKSKEHAGLKQRSPDDDAKPEMIVKS 356
SS P RF S T+L QQQ KVKSLLEK +E+A KQ DD KPE+I+K
Sbjct: 230 SSPP-------PQRFLPSRTNLPQQQS-KVKSLLEKCQEYAEKKQSL--DDPKPELIIK- 278
Query: 357 FPLSFNPPSSSSMERRSCYSKLLPFPEMFAGGLGLNHQKLAPAVHMRSVIPVCSAPPPKP 536
+ +P SSSS R+CYSKLLPF GLN+QKLAPAVH+RSVIPVCSAPPPKP
Sbjct: 279 ---TSSPSSSSSSVERNCYSKLLPF-----SSFGLNNQKLAPAVHIRSVIPVCSAPPPKP 330
Query: 537 PSMQFNEPNTSSCSAPSSLGIKGQEK 614
N S S LG GQEK
Sbjct: 331 -----NPNPNPSPSTTRELGNGGQEK 351
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 151 bits (379), Expect = 1e-034
Identities = 102/202 (50%), Positives = 120/202 (59%), Gaps = 18/202 (8%)
Frame = +3
Query: 12 KVVARVLSRFRPKEVRRREQHHSRRR-AIRQDTTTTRDFLCEKLRLISPYTEEASSSSSS 188
++VARVLSRFRPKEV+RRE + SRRR IR T L+ + ++
Sbjct: 170 EIVARVLSRFRPKEVKRREPNQSRRRTVIRTIRQNTTTTTTTTGDLLCEKLRSINLYTNE 229
Query: 189 AKHNQTLPPRFWSSTTDLQQQQECKVKSLLEKSKEHAGLKQRSPDDDAKPEMIVKSFPLS 368
A + P RFW S T+L Q+Q KVKSLLEK +E+A KQ DD KPEM +K+ S
Sbjct: 230 ASSSSPPPQRFWPSRTNLTQEQS-KVKSLLEKCQEYAEKKQSL--DDPKPEMRIKT---S 283
Query: 369 FNPPSSSSMERRSCYSKLLPFPEMFAGGLGLNHQKLAPAVHMRSVIPVCSAPPPKPPSMQ 548
P SSS+E R+CYSKLLPFP LNHQKLAPAVH+RSVIPVCSAPPPKP
Sbjct: 284 SPSPLSSSVE-RNCYSKLLPFPSFV-----LNHQKLAPAVHIRSVIPVCSAPPPKP---- 333
Query: 549 FNEPNTSSCSAPSSLGIKGQEK 614
N SS LG QEK
Sbjct: 334 -NPNPNSSPFITRELGNGSQEK 354
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 63 bits (152), Expect = 3e-008
Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 14/83 (16%)
Frame = +3
Query: 414 SKLLPFPEM----FAGGLGLNHQKLAPAVHMRSVIPVCSAPPPKPP--------SMQFNE 557
SK +PF +M F GG +N LAPAV MRSVIPV +APPPKP S NE
Sbjct: 281 SKQMPFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAAPPPKPNPNLNPSSLSSSVNE 340
Query: 558 --PNTSSCSAPSSLGIKGQEKKS 620
+ +SCS ++ G+ GQEKK+
Sbjct: 341 FTSSNNSCSVLNTPGLGGQEKKN 363
Score = 63 bits (151), Expect = 3e-008
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Frame = +3
Query: 12 KVVARVLSRFRPKEVRRREQHHS-RRRAIRQDTTTTRDFLCEKLRLISPYTEEASSSSSS 188
+ VARVLSRF+PKEVRRRE + RRR +QD + +D L E+LR I+ T +ASSSSS+
Sbjct: 160 EAVARVLSRFKPKEVRRRETTNQWRRRTSQQD--SNKDLLIERLRWINLLTNQASSSSST 217
Query: 189 AKHNQTLPPRFWSSTTDLQQQQECKVKSLLEKSKEHAGLKQRS 317
+ NQ F S + K+ +++ K+ + + ++
Sbjct: 218 STPNQHKNSSFISLIPPPPPPKSSKILPFIQQYKDRSSQEAKT 260
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 63 bits (152), Expect = 3e-008
Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 14/83 (16%)
Frame = +3
Query: 414 SKLLPFPEM----FAGGLGLNHQKLAPAVHMRSVIPVCSAPPPKPP--------SMQFNE 557
SK +PF +M F GG +N LAPAV MRSVIPV +APPPKP S NE
Sbjct: 290 SKQMPFSDMNRYNFVGGCSVNPYSLAPAVQMRSVIPVFAAPPPKPNPNLNPSSLSSSVNE 349
Query: 558 --PNTSSCSAPSSLGIKGQEKKS 620
+ +SCS ++ G+ GQEKK+
Sbjct: 350 FTSSNNSCSVLNTPGLGGQEKKN 372
Score = 63 bits (151), Expect = 3e-008
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Frame = +3
Query: 12 KVVARVLSRFRPKEVRRREQHHS-RRRAIRQDTTTTRDFLCEKLRLISPYTEEASSSSSS 188
+ VARVLSRF+PKEVRRRE + RRR +QD + +D L E+LR I+ T +ASSSSS+
Sbjct: 169 EAVARVLSRFKPKEVRRRETTNQWRRRTSQQD--SNKDLLIERLRWINLLTNQASSSSST 226
Query: 189 AKHNQTLPPRFWSSTTDLQQQQECKVKSLLEKSKEHAGLKQRS 317
+ NQ F S + K+ +++ K+ + + ++
Sbjct: 227 STPNQHKNSSFISLIPPPPPPKSSKILPFIQQYKDRSSQEAKT 269
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata
subsp. lyrata]
Length = 394
Score = 60 bits (145), Expect = 2e-007
Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Frame = +3
Query: 12 KVVARVLSRFRPKEVRRREQHHS-RRRAIRQDTTTTRDFLCEKLRLISPYTEEASSSSSS 188
+ VARVLSRF+PKEVRRRE + RRR +QD + +D L E+LR I+ T +ASSSSSS
Sbjct: 169 EAVARVLSRFKPKEVRRRETTNQWRRRTSQQD--SNKDLLIERLRWINLLTNQASSSSSS 226
Query: 189 AKHNQ 203
+ Q
Sbjct: 227 SSSTQ 231
Score = 60 bits (144), Expect = 2e-007
Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 14/89 (15%)
Frame = +3
Query: 396 ERRSCYSKLLPFPE----MFAGGLGLNHQKLAPAVHMRSVIPVCSAPPPKPP-------- 539
E + +SK +PF + F GG +N LAPAV +RSVIPV +APP KP
Sbjct: 286 ETSNRFSKQMPFSDNGRYNFVGGCSVNPLSLAPAVQIRSVIPVFAAPPSKPNPNPNPSSL 345
Query: 540 SMQFNEPNTS--SCSAPSSLGIKGQEKKS 620
S NE TS SCS ++ G+ GQ+KKS
Sbjct: 346 SSSVNESTTSKNSCSVLNTTGLGGQKKKS 374
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,366,029,682
Number of Sequences: 15229318
Number of Extensions: 798366029682
Number of Successful Extensions: 240520672
Number of sequences better than 0.0: 0
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