BLASTX 7.6.2
Query= UN76635 /QuerySize=714
(713 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | SKP2B; u... 386 9e-108
TAIR9_protein||AT1G21410.1 | Symbols: SKP2A | SKP2A | chr1:74974... 371 3e-103
TAIR9_protein||AT5G23340.1 | Symbols: | INVOLVED IN: biological... 94 6e-020
TAIR9_protein||AT5G25350.1 | Symbols: EBF2 | EBF2 (EIN3-BINDING ... 70 9e-013
TAIR9_protein||AT3G58530.1 | Symbols: | F-box family protein-re... 62 2e-010
TAIR9_protein||AT4G15475.1 | Symbols: | F-box family protein (F... 62 2e-010
TAIR9_protein||AT3G07550.1 | Symbols: | F-box family protein (F... 56 2e-008
TAIR9_protein||AT3G07550.2 | Symbols: | F-box family protein (F... 56 2e-008
TAIR9_protein||AT5G67140.1 | Symbols: | F-box family protein | ... 56 2e-008
>TAIR9_protein||AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | SKP2B;
ubiquitin-protein ligase | chr1:28940888-28942401 FORWARD
Length = 361
Score = 386 bits (990), Expect = 9e-108
Identities = 183/201 (91%), Positives = 192/201 (95%), Gaps = 2/201 (0%)
Frame = -2
Query: 712 LAYLTRFCRKLKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADG 533
LA+LTRFCRKLK+LNLCGCVEAVSDN LQAIGENC+Q+QSLNLGWCE ISDDGVMSLA G
Sbjct: 161 LAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYG 220
Query: 532 CPDLRSLDLCGCVLITDESVVALANRCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEL 353
CPDLR+LDLC CVLITDESVVALANRC+HLRSLGLYYCRNITDRAMYSLAQSGVKNKHE+
Sbjct: 221 CPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEM 280
Query: 352 WRSVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLTSV 173
WR+VKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNL SV
Sbjct: 281 WRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSV 340
Query: 172 HCACILQAHRAHTHSALPHPA 110
HCACILQAHR TH+ PHPA
Sbjct: 341 HCACILQAHR--THTVYPHPA 359
Score = 70 bits (169), Expect = 1e-012
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Frame = -2
Query: 703 LTRFCRKLKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADGCPD 524
+ C +L+ L+L ++D++L ++ C+ + LNL C SD + L C
Sbjct: 112 IANHCHELQDLDLSKS-SKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFCRK 170
Query: 523 LRSLDLCGCV-LITDESVVALANRCVHLRSLGLYYCRNITDRAMYSLA 383
L+ L+LCGCV ++D ++ A+ C L+SL L +C NI+D + SLA
Sbjct: 171 LKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLA 218
>TAIR9_protein||AT1G21410.1 | Symbols: SKP2A | SKP2A | chr1:7497479-7499386
FORWARD
Length = 361
Score = 371 bits (951), Expect = 3e-103
Identities = 178/201 (88%), Positives = 191/201 (95%), Gaps = 2/201 (0%)
Frame = -2
Query: 712 LAYLTRFCRKLKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADG 533
+AYLTRFCRKLKVLNLCGCV+AV+DNAL+AIG NC+QMQSLNLGWCE ISDDGVMSLA G
Sbjct: 161 IAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYG 220
Query: 532 CPDLRSLDLCGCVLITDESVVALANRCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEL 353
CPDLR+LDLCGCVLITDESVVALA+ CVHLRSLGLYYCRNITDRAMYSLAQSGVKNK
Sbjct: 221 CPDLRTLDLCGCVLITDESVVALADWCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGS 280
Query: 352 WRSVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLTSV 173
W+SVKKGK+DEEGLRSLNISQCT LTPSAVQAVCD+FPALHTCSGRHSLVMSGCLNLT+V
Sbjct: 281 WKSVKKGKYDEEGLRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTV 340
Query: 172 HCACILQAHRAHTHSALPHPA 110
HCACILQAHRA H+A+PHPA
Sbjct: 341 HCACILQAHRA--HNAVPHPA 359
Score = 75 bits (182), Expect = 5e-014
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Frame = -2
Query: 703 LTRFCRKLKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADGCPD 524
+ C +L+ L+L ++ ++D +L A+ C + LNL C SD + L C
Sbjct: 112 IANHCHELQELDLSKSLK-ITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRK 170
Query: 523 LRSLDLCGCV-LITDESVVALANRCVHLRSLGLYYCRNITDRAMYSLA 383
L+ L+LCGCV +TD ++ A+ N C ++SL L +C NI+D + SLA
Sbjct: 171 LKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLA 218
Score = 72 bits (174), Expect = 4e-013
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -2
Query: 685 KLKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADGCPDLRSLDL 506
KL+ LNL + DNA++AI +C ++Q L+L KI+D + +LA GCPDL L+L
Sbjct: 91 KLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNL 150
Query: 505 CGCVLITDESVVALANRCVHLRSLGLYYC-RNITDRAMYSLAQS 377
GC +D ++ L C L+ L L C + +TD A+ ++ +
Sbjct: 151 SGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNN 194
>TAIR9_protein||AT5G23340.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype
(InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box
family protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits to 3545
proteins in 210 species: Archae - 0; Bacteria - 454; Metazoa - 4575;
Fungi - 774; Plants - 2118; Viruses - 15; Other Eukaryotes - 1159
(source: NCBI BLink). | chr5:7856314-7857983 FORWARD
Length = 406
Score = 94 bits (233), Expect = 6e-020
Identities = 50/117 (42%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Frame = -2
Query: 712 LAYLTRFCRKLKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADG 533
LA ++ + L+VLNL C + ++D L +IG S +Q L++ +C K+SD G+ ++A+G
Sbjct: 90 LAVISEGFKFLRVLNLHNC-KGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEG 148
Query: 532 CPDLRSLDLCGCVLITDESVVALANRCVHLRSLGLYYCRNITDRAMYSLAQSGVKNK 362
C DLR+L L GC ITDES+ +L+ RC L +LGL C NITD + L + K K
Sbjct: 149 CHDLRALHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIK 205
>TAIR9_protein||AT5G25350.1 | Symbols: EBF2 | EBF2 (EIN3-BINDING F BOX PROTEIN
2); protein binding | chr5:8794842-8796882 REVERSE
Length = 624
Score = 70 bits (171), Expect = 9e-013
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Frame = -2
Query: 691 CRKLKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADGCPDLRSL 512
C L++++L + AVSD L I +C ++ L+L C I+D G++++A+ C +L L
Sbjct: 166 CPSLRIVSLWN-LPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDL 224
Query: 511 DLCGCVLITDESVVALANRCVHLRSLGLYYCRNITDRAM-YSLAQSG 374
+ C + +E + A+A RCV+LRS+ + C I D+ + + LAQ+G
Sbjct: 225 TIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLLAQAG 271
Score = 51 bits (120), Expect = 7e-007
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = -2
Query: 655 VEAVSDNALQAIG--ENCSQMQSLNLGWCEKISDDGVMSLADGCPDLRSLDLCGCVLITD 482
++ V++ +G + +++SL++ C ++D G+ ++ +GCPDL+ + L C+L++
Sbjct: 307 LQGVNEKGFWVMGNAKGLKKLKSLSVMSCRGMTDVGLEAVGNGCPDLKHVSLNKCLLVSG 366
Query: 481 ESVVALANRCVHLRSLGLYYCRNI 410
+ +VALA + L SL L C I
Sbjct: 367 KGLVALAKSALSLESLKLEECHRI 390
>TAIR9_protein||AT3G58530.1 | Symbols: | F-box family protein-related |
chr3:21645759-21648219 FORWARD
Length = 354
Score = 62 bits (150), Expect = 2e-010
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Frame = -2
Query: 682 LKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADGCPDLRSLDLC 503
L+ L++CG + +SD + I + C++++SLNL WC +I+D GV ++A+ C L L L
Sbjct: 242 LRFLDICG-AQNISDEGIGHIAK-CNKLESLNLTWCVRITDAGVNTIANSCTSLEFLSLF 299
Query: 502 GCVLITDESVVALANRC-VHLRSLGLYYCRNITDRAMYSLAQ 380
G V +TD + L+ C L +L + C I R+ L Q
Sbjct: 300 GIVGVTDRCLETLSQTCSTTLTTLDVNGCTGIKRRSREELLQ 341
Score = 62 bits (150), Expect = 2e-010
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Frame = -2
Query: 688 RKLKVLNLCGCVEAVSDNALQAIGENCS----QMQSLNLGWCEKISDDGVMSLADGCPDL 521
R++K +NL + V D+ L+ + C ++ LNL C+KISD+G+ ++ CP L
Sbjct: 81 RQVKHINL-EFAQGVVDSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPKL 139
Query: 520 RSLDLCGCVLITDESVVALANRCVHLRSLGLYYCRNITDRAMYSLAQS 377
+ + V +TD + L C H+ L L C+++TD++M +A+S
Sbjct: 140 KVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAES 187
>TAIR9_protein||AT4G15475.1 | Symbols: | F-box family protein (FBL4) |
chr4:8845927-8848701 FORWARD
Length = 611
Score = 62 bits (150), Expect = 2e-010
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = -2
Query: 649 AVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADGCPDLRSLDLCGCVLITDESVV 470
+++D L A+ ++++L+L WC +S G+ SLA C L+SLDL GC + D+ +
Sbjct: 126 SLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGC-YVGDQGLA 184
Query: 469 ALANRCVHLRSLGLYYCRNITDRAMYSL 386
A+ C L L L +C +TD + L
Sbjct: 185 AVGKFCKQLEELNLRFCEGLTDVGVIDL 212
>TAIR9_protein||AT3G07550.1 | Symbols: | F-box family protein (FBL12) |
chr3:2409946-2411133 FORWARD
Length = 396
Score = 56 bits (134), Expect = 2e-008
Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Frame = -2
Query: 703 LTRFCRKLKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADGCPD 524
LTRF + L+ L+L GC ++D++L ++ +++ +L L C ISDDG+ ++A CP+
Sbjct: 87 LTRF-QWLEHLSLSGCT-VLNDSSLDSLRYPGARLHTLYLDCCFGISDDGISTIASFCPN 144
Query: 523 LRSLDLCGCVLITDESVVALANRCVHLRSLGLYYCRNITDRAMYSLAQS 377
L + L C I+D + LA + L+ + L YC ++D + +L+Q+
Sbjct: 145 LSVVSLYRC-NISDIGLETLARASLSLKCVNLSYCPLVSDFGIKALSQA 192
>TAIR9_protein||AT3G07550.2 | Symbols: | F-box family protein (FBL12) |
chr3:2409946-2411133 FORWARD
Length = 396
Score = 56 bits (134), Expect = 2e-008
Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Frame = -2
Query: 703 LTRFCRKLKVLNLCGCVEAVSDNALQAIGENCSQMQSLNLGWCEKISDDGVMSLADGCPD 524
LTRF + L+ L+L GC ++D++L ++ +++ +L L C ISDDG+ ++A CP+
Sbjct: 87 LTRF-QWLEHLSLSGCT-VLNDSSLDSLRYPGARLHTLYLDCCFGISDDGISTIASFCPN 144
Query: 523 LRSLDLCGCVLITDESVVALANRCVHLRSLGLYYCRNITDRAMYSLAQS 377
L + L C I+D + LA + L+ + L YC ++D + +L+Q+
Sbjct: 145 LSVVSLYRC-NISDIGLETLARASLSLKCVNLSYCPLVSDFGIKALSQA 192
>TAIR9_protein||AT5G67140.1 | Symbols: | F-box family protein |
chr5:26794009-26795213 REVERSE
Length = 229
Score = 56 bits (134), Expect = 2e-008
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = -2
Query: 646 VSDNAL-QAIGENC-SQMQSLNLGWCEKISDDGVMSLADGCPDLRSLDLCGCVLITDESV 473
++DN L Q C S + S++L I+D GV+ L L+ L++ G ITDES+
Sbjct: 88 ITDNGLYQIASARCVSNLNSVSLWGMTAITDSGVVQLISRTSSLQHLNI-GGTFITDESL 146
Query: 472 VALANRCVHLRSLGLYYCRNITDRAMYSL 386
A+A RC L+++G++ CR++T+R + L
Sbjct: 147 FAIAERCHQLKTIGMWCCRHVTERGLLVL 175
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,036,922,200
Number of Sequences: 33410
Number of Extensions: 33036922200
Number of Successful Extensions: 1114053961
Number of sequences better than 0.0: 0
|
