BLASTX 7.6.2
Query= UN77320 /QuerySize=702
(701 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 212 2e-055
TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2... 170 8e-043
TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A... 150 8e-037
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 142 3e-034
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 141 7e-034
TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDI... 122 2e-028
TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDI... 112 3e-025
TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDI... 101 6e-022
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 212 bits (538), Expect = 2e-055
Identities = 101/111 (90%), Positives = 108/111 (97%)
Frame = -1
Query: 701 KVATDHMGQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEERESAADKMK 522
KVATDHMGQS+GYGFVQF++EDSAK+AIEKLNGK+LNDKQIFVGPFL+KEERESAADKMK
Sbjct: 164 KVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMK 223
Query: 521 FTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANFEN 369
FTNVYVKNLSE TTDDELKTTFGQYG ISSAVVMRDGDG+SRCFGF NFEN
Sbjct: 224 FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFEN 274
Score = 114 bits (285), Expect = 5e-026
Identities = 60/72 (83%), Positives = 64/72 (88%), Gaps = 5/72 (6%)
Frame = -1
Query: 374 ENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQPSE-----GKSGSPSD 210
E+AAKVTGMLLEMDQTEVLHL+ESPEALNAKVSEALDVLRNVNQPS KSGSPSD
Sbjct: 592 EHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSSQGSEGNKSGSPSD 651
Query: 209 MMASLSINDHL* 174
++ASLSINDHL*
Sbjct: 652 LLASLSINDHL* 663
Score = 96 bits (236), Expect = 2e-020
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Frame = -1
Query: 698 VATDHMGQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEERE-------- 543
V D G+S+ +GFV FE+ + A A+E LNGK +DK+ +VG KK ERE
Sbjct: 256 VMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYE 315
Query: 542 ----SAADKMKFTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANF 375
+K N+YVKNL +T TD++L+ F ++G I+S VMRD G S+ GF F
Sbjct: 316 QGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAF 375
Query: 374 ENAAKVTGMLLEMDQTEV------LHLIESPEALNAKVSEALDVLRNVNQPSEG 231
A++ + +L EM+ V + L + E AK+ +R P G
Sbjct: 376 SAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVG 429
>TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A)
BINDING 2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 630
Score = 170 bits (430), Expect = 8e-043
Identities = 78/112 (69%), Positives = 99/112 (88%)
Frame = -1
Query: 701 KVATDHMGQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEERESAADKMK 522
KVA D GQSKGYGFVQ+ +E+SA+ AIEKLNG +LNDKQ++VGPFL+++ER+S A+K K
Sbjct: 154 KVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTK 213
Query: 521 FTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANFENA 366
FTNVYVKNL+E+TTDD+LK FG+YG I+SAVVM+DG+G+S+ FGF NFENA
Sbjct: 214 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENA 265
Score = 74 bits (179), Expect = 1e-013
Identities = 39/59 (66%), Positives = 48/59 (81%), Gaps = 6/59 (10%)
Frame = -1
Query: 374 ENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQPSEGKSGSPSDMMAS 198
E+AAKVTGMLLEMDQTEVLHL+ESPEAL AKV+EA+DVLR+V +G ++ +AS
Sbjct: 573 ESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSV------AAGGATEQLAS 625
Score = 56 bits (134), Expect = 2e-008
Identities = 26/74 (35%), Positives = 46/74 (62%)
Frame = -1
Query: 557 KEERESAADKMKFTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFAN 378
++ + AADK + +N+YVKNL + +D++LK F +G ++S+ VMRD +G S+ GF
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVA 364
Query: 377 FENAAKVTGMLLEM 336
F + T + ++
Sbjct: 365 FATPEEATEAMSQL 378
>TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING
PROTEIN 8); RNA binding / translation initiation factor |
chr1:18416740-18419753 FORWARD
Length = 672
Score = 150 bits (378), Expect = 8e-037
Identities = 66/112 (58%), Positives = 94/112 (83%)
Frame = -1
Query: 701 KVATDHMGQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEERESAADKMK 522
KVA D GQSKGYGFVQ++++++A+ AI+KLNG +LNDKQ++VGPF+ K +R+ + +K+K
Sbjct: 163 KVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 521 FTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANFENA 366
FTNVYVKNLSE+ +D+EL FG++G +S V+MRDG+G+S+ FGF NFEN+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENS 274
Score = 85 bits (209), Expect = 3e-017
Identities = 44/66 (66%), Positives = 56/66 (84%), Gaps = 3/66 (4%)
Frame = -1
Query: 374 ENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQPSEGKSGSPSDMMASL 195
E+AAKVTGMLLEMDQTEVLHL+ESPEAL AKV+EA+DVLR+V Q ++G +D +ASL
Sbjct: 607 ESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQ---QAGGAADQLASL 663
Query: 194 SINDHL 177
S+ D++
Sbjct: 664 SLGDNI 669
Score = 67 bits (161), Expect = 1e-011
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Frame = -1
Query: 557 KEERESAADKMKFTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFAN 378
++ + AADK + +N+YVKNL E+ TDD+L+ F +G I+S VMRD G SR GF
Sbjct: 314 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVA 373
Query: 377 FENAAKVTGMLLEMDQTEV------LHLIESPEALNAKVSEALDVLRNVNQP 240
F + T + EM+ + + L + E A++ +R VN P
Sbjct: 374 FSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMP 425
Score = 59 bits (142), Expect = 2e-009
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = -1
Query: 698 VATDHMGQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEERESAADKMKF 519
+ D G+SKG+GFV FE+ D A A++ LNGK +DK+ FVG KK ERE+ K KF
Sbjct: 255 IMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETEL-KQKF 313
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 142 bits (356), Expect = 3e-034
Identities = 69/112 (61%), Positives = 88/112 (78%), Gaps = 2/112 (1%)
Frame = -1
Query: 701 KVATDHMGQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEE--RESAADK 528
KVA D G+SKGYGFVQFE E+SA++AI+KLNG ++NDKQ+FVG F++++E R+
Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPT 225
Query: 527 MKFTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANFE 372
+FTNVYVKNL + +DEL+ TFG++G ISSAVVMRD G SRCFGF NFE
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFE 277
Score = 67 bits (162), Expect = 9e-012
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = -1
Query: 371 NAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQPSEGKSG 222
+ AKVTGMLLEMDQ E+LHL+ESPEAL +KVSEALDVLR P++ G
Sbjct: 606 HVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTDHDLG 655
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 141 bits (353), Expect = 7e-034
Identities = 72/112 (64%), Positives = 89/112 (79%), Gaps = 4/112 (3%)
Frame = -1
Query: 701 KVATDHMGQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEER---ESAAD 531
KVA D +G+SKGYGFVQFE E++A++AI+KLNG +LNDKQ+FVG F+++++R ES A
Sbjct: 162 KVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGA- 220
Query: 530 KMKFTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANF 375
FTNVYVKNL + TDDELK TFG+YG ISSAVVM+D G SR FGF NF
Sbjct: 221 VPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNF 272
Score = 72 bits (176), Expect = 2e-013
Identities = 36/45 (80%), Positives = 39/45 (86%)
Frame = -1
Query: 371 NAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLRNVNQPS 237
NAAKVTGMLLEMDQ E+LHL+ESPEAL AKVSEALDVLR P+
Sbjct: 609 NAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPA 653
>TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6);
RNA binding / translation initiation factor | chr3:5558676-5560993
REVERSE
Length = 538
Score = 122 bits (306), Expect = 2e-028
Identities = 65/110 (59%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Frame = -1
Query: 680 GQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEERESAADKMKFTNVYVK 501
GQSKG+GFVQF++E SA SA L+G ++ K++FV F+ K+ER + A TNVYVK
Sbjct: 148 GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVK 207
Query: 500 NLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANF---ENAAK 360
NL ET TDD L T F QYG +SS VVMRDG GRSR FGF NF ENA K
Sbjct: 208 NLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKK 257
Score = 55 bits (131), Expect = 4e-008
Identities = 28/57 (49%), Positives = 37/57 (64%)
Frame = -1
Query: 539 AADKMKFTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANFEN 369
A M+++N+YVKNLSE+ + L+ FG YG I SA VM +GRS+ FGF F N
Sbjct: 297 AKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSN 353
>TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1);
RNA binding / translation initiation factor | chr1:12433356-12434735
REVERSE
Length = 408
Score = 112 bits (278), Expect = 3e-025
Identities = 62/119 (52%), Positives = 81/119 (68%), Gaps = 4/119 (3%)
Frame = -1
Query: 701 KVATDHMGQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEERESAADKMK 522
KVA D G SKGYGFVQF S+ S +A NG ++ ++ I V PF+ + + + +
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKS---RV 117
Query: 521 FTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANFENA-AKVTGM 348
FTNVYVKNL ET TD +LK FG++G I+SAVVM+DG+G+SR FGF NFE A A VT +
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
>TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7);
RNA binding / translation initiation factor | chr2:15361476-15364398
REVERSE
Length = 610
Score = 101 bits (250), Expect = 6e-022
Identities = 50/111 (45%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
Frame = -1
Query: 701 KVATDHMGQSKGYGFVQFESEDSAKSAIEKLNGKILNDKQIFVGPFLKKEERESAADKMK 522
KVAT G+S+GYGFVQFE ED+A +AI+ LN I+ DK+I+VG F+KK +R + K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEE--K 199
Query: 521 FTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFANFEN 369
+TN+Y+KNL ++D L+ F ++G I S + +D + R + F NF+N
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDN 250
Score = 50 bits (118), Expect = 1e-006
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = -1
Query: 557 KEERESAADKMKFTNVYVKNLSETTTDDELKTTFGQYGGISSAVVMRDGDGRSRCFGFAN 378
KE+ E K +N+YVKN++ T++EL+ F Q G I+S +M D G+S+ FGF
Sbjct: 291 KEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVC 350
Query: 377 F 375
F
Sbjct: 351 F 351
Score = 50 bits (117), Expect = 2e-006
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Frame = -1
Query: 368 AAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLR----NVNQPSEGKSGSPSDMMA 201
A K+TGMLLEMD++E+L L++SPE L +V EA +VL+ N+ P+ +S + +A
Sbjct: 545 ANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKTNLTAPNTHRSDYLASGIA 604
Query: 200 SLSI 189
+SI
Sbjct: 605 GVSI 608
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,252,145,367
Number of Sequences: 33410
Number of Extensions: 33252145367
Number of Successful Extensions: 1129160757
Number of sequences better than 0.0: 0
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