BLASTX 7.6.2
Query= UN77823 /QuerySize=746
(745 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|217426791|gb|ACK44499.1| AT5G09920-like protein [Arabidopsis ... 159 5e-037
gi|297807017|ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata sub... 152 6e-035
gi|15242547|ref|NP_196554.1| DNA-directed RNA polymerase II subu... 152 7e-035
gi|255632071|gb|ACU16388.1| unknown [Glycine max] 151 1e-034
gi|255625623|gb|ACU13156.1| unknown [Glycine max] 151 2e-034
gi|255632992|gb|ACU16850.1| unknown [Glycine max] 150 3e-034
gi|224083811|ref|XP_002307132.1| predicted protein [Populus tric... 149 5e-034
gi|255562011|ref|XP_002522014.1| DNA-directed RNA polymerase II,... 148 8e-034
gi|225446712|ref|XP_002282413.1| PREDICTED: hypothetical protein... 148 1e-033
gi|146403790|gb|ABQ32301.1| putative 15.9 kDa subunit of RNA pol... 143 4e-032
gi|192910802|gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [... 138 1e-030
gi|242063790|ref|XP_002453184.1| hypothetical protein SORBIDRAFT... 136 5e-030
gi|226497040|ref|NP_001148722.1| DNA-directed RNA polymerase II ... 134 2e-029
gi|168028875|ref|XP_001766952.1| predicted protein [Physcomitrel... 123 4e-026
gi|302768831|ref|XP_002967835.1| hypothetical protein SELMODRAFT... 114 2e-023
>gi|217426791|gb|ACK44499.1| AT5G09920-like protein [Arabidopsis arenosa]
Length = 321
Score = 159 bits (401), Expect = 5e-037
Identities = 83/97 (85%), Positives = 88/97 (90%), Gaps = 1/97 (1%)
Frame = +2
Query: 20 AVRRRK*KLRVQSPSLAMSGEEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ 199
A ++R + R S +AMSG EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ
Sbjct: 131 AEQKRTFRFRFPSLVIAMSG-EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQ 189
Query: 200 VSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE 310
VSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE
Sbjct: 190 VSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE 226
>gi|297807017|ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 152 bits (383), Expect = 6e-035
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQVSEDPMNQVSQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKNPDAVRQVRE
Sbjct: 64 RFSRYKNPDAVRQVRE 79
Score = 109 bits (270), Expect = 7e-022
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +2
Query: 485 ILSRHQLTEFELCVLGNLCPETAEEAVAMVPSLKTKGRAHSDEAIEKMLNDLSLVR 652
ILSRHQLTEFELCVLGNLCPET EEAVAMVPSLKTKGRAH DEAIEKMLNDLSLV+
Sbjct: 80 ILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIEKMLNDLSLVK 135
>gi|15242547|ref|NP_196554.1| DNA-directed RNA polymerase II subunit D
[Arabidopsis thaliana]
Length = 138
Score = 152 bits (382), Expect = 7e-035
Identities = 74/76 (97%), Positives = 76/76 (100%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENAAELKIGDEFLKAKCLMNCEVSLILEHK+EQLQQ+SEDPMNQVSQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKNPDAVRQVRE
Sbjct: 64 RFSRYKNPDAVRQVRE 79
Score = 109 bits (270), Expect = 7e-022
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +2
Query: 485 ILSRHQLTEFELCVLGNLCPETAEEAVAMVPSLKTKGRAHSDEAIEKMLNDLSLVR 652
ILSRHQLTEFELCVLGNLCPET EEAVAMVPSLKTKGRAH DEAIEKMLNDLSLV+
Sbjct: 80 ILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIEKMLNDLSLVK 135
>gi|255632071|gb|ACU16388.1| unknown [Glycine max]
Length = 138
Score = 151 bits (380), Expect = 1e-034
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ S+DPMNQVSQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKNPDAVRQVRE
Sbjct: 64 RFSRYKNPDAVRQVRE 79
>gi|255625623|gb|ACU13156.1| unknown [Glycine max]
Length = 138
Score = 151 bits (379), Expect = 2e-034
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ S+DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKNPDAVRQVRE
Sbjct: 64 RFSRYKNPDAVRQVRE 79
>gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 150 bits (377), Expect = 3e-034
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENAAELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ S+DPMNQVSQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKNPDAVRQVRE
Sbjct: 64 RFSRYKNPDAVRQVRE 79
>gi|224083811|ref|XP_002307132.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 149 bits (375), Expect = 5e-034
Identities = 72/76 (94%), Positives = 76/76 (100%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENAAELKIGD+FLKAKCLMNCEV+LILEHKYEQLQQ+S+DPMNQVSQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKNPDAVRQVRE
Sbjct: 64 RFSRYKNPDAVRQVRE 79
Score = 103 bits (255), Expect = 4e-020
Identities = 48/56 (85%), Positives = 53/56 (94%)
Frame = +2
Query: 485 ILSRHQLTEFELCVLGNLCPETAEEAVAMVPSLKTKGRAHSDEAIEKMLNDLSLVR 652
ILSR+QL EFELCVLGNLCPET EEA+AMVPS+KTKGRAH DEAIEKMLNDLSL++
Sbjct: 80 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLNDLSLIK 135
>gi|255562011|ref|XP_002522014.1| DNA-directed RNA polymerase II, putative
[Ricinus communis]
Length = 138
Score = 148 bits (373), Expect = 8e-034
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENA+ELKIGDEFLKAKCLMNCEV+LILEHKYEQLQQ+S DPMNQVSQVFEKSLQYVK
Sbjct: 4 EEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKNPDAVRQVRE
Sbjct: 64 RFSRYKNPDAVRQVRE 79
Score = 100 bits (247), Expect = 3e-019
Identities = 46/56 (82%), Positives = 52/56 (92%)
Frame = +2
Query: 485 ILSRHQLTEFELCVLGNLCPETAEEAVAMVPSLKTKGRAHSDEAIEKMLNDLSLVR 652
ILSR+QL EFELCVLGNLCPET EEA+AMVPS+KTKGRAH DEAIEKML DLS+++
Sbjct: 80 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLTDLSMIK 135
>gi|225446712|ref|XP_002282413.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 138
Score = 148 bits (372), Expect = 1e-033
Identities = 71/76 (93%), Positives = 76/76 (100%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENAAELKIGDEFLKAKCLMNCEV++ILEHKYEQLQQ+S+DP+NQVSQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKNPDAVRQVRE
Sbjct: 64 RFSRYKNPDAVRQVRE 79
Score = 103 bits (255), Expect = 4e-020
Identities = 48/56 (85%), Positives = 53/56 (94%)
Frame = +2
Query: 485 ILSRHQLTEFELCVLGNLCPETAEEAVAMVPSLKTKGRAHSDEAIEKMLNDLSLVR 652
ILSR+QL EFELCVLGNLCPET EEA+AMVPS+KTKGRAH DEAIEKMLNDLSL++
Sbjct: 80 ILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLNDLSLIK 135
>gi|146403790|gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II
[Artemisia annua]
Length = 138
Score = 143 bits (358), Expect = 4e-032
Identities = 70/76 (92%), Positives = 73/76 (96%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ +S+DP NQVSQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKNPDAVRQVRE
Sbjct: 64 RFSRYKNPDAVRQVRE 79
>gi|192910802|gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis
guineensis]
Length = 138
Score = 138 bits (346), Expect = 1e-030
Identities = 66/76 (86%), Positives = 73/76 (96%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 262
EEEENAAELKIG+EFLKAKCLMNCEV+LIL+ KYEQLQQ+S+DP NQ+SQVFEKS+QYVK
Sbjct: 4 EEEENAAELKIGEEFLKAKCLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSMQYVK 63
Query: 263 RFSRYKNPDAVRQVRE 310
RFSRYKN DAVRQVRE
Sbjct: 64 RFSRYKNQDAVRQVRE 79
>gi|242063790|ref|XP_002453184.1| hypothetical protein SORBIDRAFT_04g001250
[Sorghum bicolor]
Length = 143
Score = 136 bits (340), Expect = 5e-030
Identities = 68/78 (87%), Positives = 73/78 (93%), Gaps = 2/78 (2%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVS--EDPMNQVSQVFEKSLQY 256
EEEENAAELKIG+EFLKAKCLMNCEV++ILEHKYEQ+QQ S DP +QVSQVFEKSLQY
Sbjct: 4 EEEENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQQHSSESDPSSQVSQVFEKSLQY 63
Query: 257 VKRFSRYKNPDAVRQVRE 310
VKRFSRYKNPDAVRQVRE
Sbjct: 64 VKRFSRYKNPDAVRQVRE 81
>gi|226497040|ref|NP_001148722.1| DNA-directed RNA polymerase II 16 kDa
polypeptide [Zea mays]
Length = 144
Score = 134 bits (336), Expect = 2e-029
Identities = 67/79 (84%), Positives = 72/79 (91%), Gaps = 3/79 (3%)
Frame = +2
Query: 83 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQ---VSEDPMNQVSQVFEKSLQ 253
EEEENAAELKIG+EFLKAKCLMNCEV++ILEHKYEQ+QQ DP +QVSQVFEKSLQ
Sbjct: 4 EEEENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQQHASSESDPSSQVSQVFEKSLQ 63
Query: 254 YVKRFSRYKNPDAVRQVRE 310
YVKRFSRYKNPDAVRQVRE
Sbjct: 64 YVKRFSRYKNPDAVRQVRE 82
>gi|168028875|ref|XP_001766952.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 142
Score = 123 bits (307), Expect = 4e-026
Identities = 56/82 (68%), Positives = 74/82 (90%)
Frame = +2
Query: 86 EEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVKR 265
EEE+A+ELK+G++F+KAKCLMN EV+L+L+ KYEQLQQ+++DP +Q+SQVFE+SLQYV+R
Sbjct: 10 EEEDASELKLGEDFVKAKCLMNAEVALVLQRKYEQLQQLADDPSSQISQVFERSLQYVRR 69
Query: 266 FSRYKNPDAVRQVREYPLLNDL 331
FSRY+NPDAV+QVRE N L
Sbjct: 70 FSRYQNPDAVKQVREVLTRNQL 91
>gi|302768831|ref|XP_002967835.1| hypothetical protein SELMODRAFT_144908
[Selaginella moellendorffii]
Length = 136
Score = 114 bits (284), Expect = 2e-023
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = +2
Query: 86 EEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVKR 265
EEE+A+ELK+G++FLK KCLMN EV+ IL+HKY+ Q+S+DP +Q+SQVFEKS YVKR
Sbjct: 4 EEEDASELKLGEDFLKEKCLMNAEVAKILQHKYDTANQMSDDPSSQLSQVFEKSFAYVKR 63
Query: 266 FSRYKNPDAVRQVREYPLLNDL 331
FSRYKNP+AV+QVRE N L
Sbjct: 64 FSRYKNPEAVQQVREVLSRNQL 85
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 993,394,655,336
Number of Sequences: 15229318
Number of Extensions: 993394655336
Number of Successful Extensions: 279802528
Number of sequences better than 0.0: 0
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