Library    |     Search    |     Batch query    |     SNP    |     SSR  

GenBank blast output of UN78084


BLASTX 7.6.2

Query= UN78084 /QuerySize=715
        (714 letters)

Database: GenBank nr;
          15,229,318 sequences; 5,219,829,378 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

gi|51968556|dbj|BAD42970.1| unnamed protein product [Arabidopsis...    104   2e-020
gi|79461446|ref|NP_192183.2| F-box protein SKIP17 [Arabidopsis t...    104   2e-020
gi|297809865|ref|XP_002872816.1| hypothetical protein ARALYDRAFT...    102   5e-020
gi|297787872|ref|XP_002862153.1| predicted protein [Arabidopsis ...    102   6e-020
gi|334186327|ref|NP_001190662.1| F-box protein [Arabidopsis thal...    101   1e-019
gi|240255723|ref|NP_192185.4| F-box protein [Arabidopsis thaliana]      92   6e-017
gi|225437030|ref|XP_002272905.1| PREDICTED: hypothetical protein...     90   2e-016
gi|4263524|gb|AAD15350.1| hypothetical protein [Arabidopsis thal...     90   3e-016
gi|147783780|emb|CAN61447.1| hypothetical protein VITISV_024140 ...     88   9e-016
gi|297809869|ref|XP_002872818.1| hypothetical protein ARALYDRAFT...     81   1e-013
gi|297809861|ref|XP_002872814.1| hypothetical protein ARALYDRAFT...     66   4e-009

>gi|51968556|dbj|BAD42970.1| unnamed protein product [Arabidopsis thaliana]

          Length = 479

 Score =  104 bits (258), Expect = 2e-020
 Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 4/110 (3%)
 Frame = -2

Query: 626 KLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKTVCNFLDSLHMSKTNF 447
           KLKYLN+SR+ +I GRFLR      + +LL+TLILR C  L++K V  F +SL     NF
Sbjct: 311 KLKYLNLSRSPTIKGRFLRELGLSCKENLLKTLILRSCPKLQEKEVLEFCNSLLTG--NF 368

Query: 446 RFIRHIDVSNDHGLI--NEGRRCSKPKFPLEELREERPGLTFVAYFRSPS 303
           + IR IDVS++ GL   + G+RC+KP FPLE L+EER  +TFVA F S S
Sbjct: 369 KSIRQIDVSSNSGLASSDRGKRCNKPNFPLERLKEERSDVTFVADFPSTS 418

>gi|79461446|ref|NP_192183.2| F-box protein SKIP17 [Arabidopsis thaliana]

          Length = 479

 Score =  104 bits (258), Expect = 2e-020
 Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 4/110 (3%)
 Frame = -2

Query: 626 KLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKTVCNFLDSLHMSKTNF 447
           KLKYLN+SR+ +I GRFLR      + +LL+TLILR C  L++K V  F +SL     NF
Sbjct: 311 KLKYLNLSRSPTIKGRFLRELGLSCKENLLKTLILRSCPKLQEKEVLEFCNSLLTG--NF 368

Query: 446 RFIRHIDVSNDHGLI--NEGRRCSKPKFPLEELREERPGLTFVAYFRSPS 303
           + IR IDVS++ GL   + G+RC+KP FPLE L+EER  +TFVA F S S
Sbjct: 369 KSIRQIDVSSNSGLASSDRGKRCNKPNFPLERLKEERSDVTFVADFPSTS 418

>gi|297809865|ref|XP_002872816.1| hypothetical protein ARALYDRAFT_490282
        [Arabidopsis lyrata subsp. lyrata]

          Length = 480

 Score =  102 bits (254), Expect = 5e-020
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 4/106 (3%)
 Frame = -2

Query: 626 KLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKTVCNFLDSLHMSKTNF 447
           K+KYLN+SR+ +I GRFLR      + SLL+TLILR+C  L++K +  F +SL     +F
Sbjct: 314 KVKYLNLSRSPTIKGRFLREVGPSCKESLLKTLILRNCPKLQEKEMLEFCNSLLTG--SF 371

Query: 446 RFIRHIDVSNDHGLI--NEGRRCSKPKFPLEELREERPGLTFVAYF 315
           + IRHID+S++ GL   + G+RC+KP FPLE L+EER  +TFVA F
Sbjct: 372 KSIRHIDISSNRGLASSDRGKRCNKPNFPLERLKEERSDVTFVADF 417

>gi|297787872|ref|XP_002862153.1| predicted protein [Arabidopsis lyrata subsp.
        lyrata]

          Length = 136

 Score =  102 bits (253), Expect = 6e-020
 Identities = 61/118 (51%), Positives = 78/118 (66%), Gaps = 3/118 (2%)
 Frame = -2

Query: 641 FKGLAKLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKTVCNFLDSLHM 462
           FKG  KLKY+N+S T    G FLR   +    S LETLILR+C SL++  V  FL+SL  
Sbjct:   6 FKGFHKLKYINLSNTVGFDGSFLRVLGHRCNDSPLETLILRNCFSLQESEVLKFLNSLIA 65

Query: 461 SKTNFRFIRHIDVSNDHGLINEG-RRCSKPKFPLEELREERPGLTFVAYFRSPSLSLS 291
              NF  I++IDVS++ GL  +G RR SKP FPLE+L+EER  +TFVA F S + SL+
Sbjct:  66 G--NFISIQYIDVSSNKGLACDGERRTSKPNFPLEKLKEERSDVTFVAEFPSETKSLT 121

>gi|334186327|ref|NP_001190662.1| F-box protein [Arabidopsis thaliana]

          Length = 551

 Score =  101 bits (250), Expect = 1e-019
 Identities = 66/147 (44%), Positives = 94/147 (63%), Gaps = 7/147 (4%)
 Frame = -2

Query: 638 KGLAKLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKTVCNFLDSLHMS 459
           KG  +LK++N+S +  I+G F R      + S LETLILRDC  L++  V  FL+SL   
Sbjct: 327 KGFRRLKHINLSSSPEISGCFFRGLELCGKDSPLETLILRDCYILKESEVLLFLNSLLAG 386

Query: 458 KTNFRFIRHIDVSNDHGLI-NEGRRCSKPKFPLEELREERPGLTFVAYFRSPSLSLSSSF 282
             +F++IR IDVSN  GL+ + G R  +P+FP+EEL+++R  +TFVA F S S SLSSS 
Sbjct: 387 --DFKYIRLIDVSNVDGLVCDGGNRTFEPRFPIEELKKQRSNVTFVAIFESQS-SLSSSS 443

Query: 281 STSSFSSSTTLSPSSSSSSSSSESEDD 201
           S   +S  T+   S +S+ +S+E E D
Sbjct: 444 SGEVYSDGTS---SWTSNYNSAEEEHD 467


 Score =  80 bits (197), Expect = 2e-013
 Identities = 48/74 (64%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = -2

Query: 419 NDHGLINEGRRCSKPKFPLEELREERPGLTFVAYFRSPSLSLSSSFSTSSFSSSTTLSPS 240
           ND      G+RCSKPKFPLEEL +ERPGLTFVA FRSPS S S   S S  SSS + S S
Sbjct: 468 NDLDSHPSGKRCSKPKFPLEELNKERPGLTFVAEFRSPSPSESDVRSPSPSSSSDSSSSS 527

Query: 239 -SSSSSSSSESEDD 201
            SSSSSSS ES D+
Sbjct: 528 DSSSSSSSGESSDE 541

>gi|240255723|ref|NP_192185.4| F-box protein [Arabidopsis thaliana]

          Length = 506

 Score =  92 bits (227), Expect = 6e-017
 Identities = 57/119 (47%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
 Frame = -2

Query: 638 KGLAKLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKTVCNFLDSLHMS 459
           KG  +LK++N+S +  I+G F R      + S LETLILRDC  L++  V  FL+SL   
Sbjct: 322 KGFRRLKHINLSSSPEISGCFFRGLELCGKDSPLETLILRDCYILKESEVLLFLNSLLAG 381

Query: 458 KTNFRFIRHIDVSNDHGLI-NEGRRCSKPKFPLEELREERPGLTFVAYFRSPSLSLSSS 285
             +F++IR IDVSN  GL+ + G R  +P+FP+EEL+++R  +TFVA F S S SLSSS
Sbjct: 382 --DFKYIRLIDVSNVDGLVCDGGNRTFEPRFPIEELKKQRSNVTFVAIFESQS-SLSSS 437


 Score =  65 bits (158), Expect = 6e-009
 Identities = 40/62 (64%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = -2

Query: 383 SKPKFPLEELREERPGLTFVAYFRSPSLSLSSSFSTSSFSSSTTLSPS-SSSSSSSSESE 207
           S  +FPLEEL +ERPGLTFVA FRSPS S S   S S  SSS + S S SSSSSSS ES 
Sbjct: 435 SSSRFPLEELNKERPGLTFVAEFRSPSPSESDVRSPSPSSSSDSSSSSDSSSSSSSGESS 494

Query: 206 DD 201
           D+
Sbjct: 495 DE 496

>gi|225437030|ref|XP_002272905.1| PREDICTED: hypothetical protein [Vitis
        vinifera]

          Length = 532

 Score =  90 bits (222), Expect = 2e-016
 Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
 Frame = -2

Query: 638 KGLAKLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKTVCNFLDSLHMS 459
           KG  KLKY++ S ++SITG FLR+  +   G+LLE L+LRDC  L++  V  FL ++   
Sbjct: 348 KGFHKLKYVDFSTSYSITGTFLRNLGSSTGGNLLEVLLLRDCMHLKEVEVAKFLSAIIAG 407

Query: 458 KTNFRFIRHIDVSNDHGLINEG---RRC-SKPKFPLEELREERPGLTFVAYFRSPSLSLS 291
             +FR +R +D+SN  GL +EG    RC +    P++++ EERP +  +A F S    + 
Sbjct: 408 --DFRLLRLLDISNREGLASEGDWYYRCYNSSMIPIKQVSEERPDICLLAEFPSEGSIIE 465

Query: 290 SSFSTSSFSSSTTLSPSSSSSSSSS 216
                   +S  +LS   SS SS S
Sbjct: 466 IEQMIDILNSDASLSSQLSSHSSDS 490

>gi|4263524|gb|AAD15350.1| hypothetical protein [Arabidopsis thaliana]

          Length = 419

 Score =  90 bits (221), Expect = 3e-016
 Identities = 66/163 (40%), Positives = 86/163 (52%), Gaps = 26/163 (15%)
 Frame = -2

Query: 638 KGLAKLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKT------VCNF- 480
           KG  +LK++N+S +  I+G F R      + S LETLILRDC  L++        VC+  
Sbjct: 256 KGFRRLKHINLSSSPEISGCFFRGLELCGKDSPLETLILRDCYILKEDVSNVDGLVCDGG 315

Query: 479 ---------LDSLHMSKTNFRFIRHIDVSNDHGLINEGRRCSKPKFPLEELREERPGLTF 327
                    ++ L   ++N  F+          +       S  +FPLEEL +ERPGLTF
Sbjct: 316 NRTFEPRFPIEELKKQRSNVTFV---------AIFESQSSLSSSRFPLEELNKERPGLTF 366

Query: 326 VAYFRSPSLSLSSSFSTSSFSSSTTLSPS-SSSSSSSSESEDD 201
           VA FRSPS S S   S S  SSS + S S SSSSSSS ES D+
Sbjct: 367 VAEFRSPSPSESDVRSPSPSSSSDSSSSSDSSSSSSSGESSDE 409

>gi|147783780|emb|CAN61447.1| hypothetical protein VITISV_024140 [Vitis
        vinifera]

          Length = 603

 Score =  88 bits (217), Expect = 9e-016
 Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 6/144 (4%)
 Frame = -2

Query: 635 GLAKLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKTVCNFLDSLHMSK 456
           G  KLKY++ S ++SITG FLR+  +   G+LLE L+LRDC  L++  V  FL ++    
Sbjct: 378 GFHKLKYVDFSTSYSITGTFLRNLGSSTGGNLLEVLLLRDCMHLKEVEVAKFLSAIIAG- 436

Query: 455 TNFRFIRHIDVSNDHGLINEG---RRC-SKPKFPLEELREERPGLTFVAYFRSPSLSLSS 288
            +FR +R +D+SN  GL +EG    RC +    P++++ EERP +  +A F S    +  
Sbjct: 437 -DFRLLRLLDISNREGLASEGDWYYRCYNSSMIPIKQVSEERPDICLLAEFPSEGSIIEI 495

Query: 287 SFSTSSFSSSTTLSPSSSSSSSSS 216
                  +S  +LS   SS SS S
Sbjct: 496 EQMIDILNSDASLSSQLSSHSSDS 519

>gi|297809869|ref|XP_002872818.1| hypothetical protein ARALYDRAFT_352555
        [Arabidopsis lyrata subsp. lyrata]

          Length = 426

 Score =  81 bits (198), Expect = 1e-013
 Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
 Frame = -2

Query: 638 KGLAKLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEKKTVCNFLDSLHMS 459
           +G  KL Y+N+S+T  I+GRFLR      R S ++TLILRDC SLE++ +  FLDSL   
Sbjct: 319 EGFPKLTYMNLSKTPGISGRFLRDLRISCRDSTIKTLILRDCPSLERREIGYFLDSL--L 376

Query: 458 KTNFRFIRHIDVSNDHGLINEGRRCSKPKFPLEELREERPGLTFVA 321
             +F+FIR IDV+++  + + G+     K+ L +L+E+R  +T VA
Sbjct: 377 NGHFKFIRQIDVTSE-VIADGGKEIIVGKYILSKLKEQRSDVTVVA 421

>gi|297809861|ref|XP_002872814.1| hypothetical protein ARALYDRAFT_911926
        [Arabidopsis lyrata subsp. lyrata]

          Length = 176

 Score =  66 bits (160), Expect = 4e-009
 Identities = 33/49 (67%), Positives = 39/49 (79%)
 Frame = -2

Query: 644 SFKGLAKLKYLNISRTHSITGRFLRHFSNDFRGSLLETLILRDCDSLEK 498
           + KGL KLKYLN+SR   I GRFLR  S+D + SLLETLILRDC+SLE+
Sbjct: 109 TIKGLRKLKYLNLSRNSIIKGRFLRDVSHDCKDSLLETLILRDCNSLEE 157

  Database: GenBank nr
    Posted date:  Thu Sep 08 23:06:31 2011
  Number of letters in database: 5,219,829,378
  Number of sequences in database:  15,229,318

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 993,394,655,336
Number of Sequences: 15229318
Number of Extensions: 993394655336
Number of Successful Extensions: 279802528
Number of sequences better than 0.0: 0