BLASTX 7.6.2
Query= UN78476 /QuerySize=541
(540 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297829042|ref|XP_002882403.1| hypothetical protein ARALYDRAFT... 281 5e-074
gi|15229933|ref|NP_187172.1| DNA excision repair protein ERCC-1 ... 276 1e-072
gi|225451021|ref|XP_002281063.1| PREDICTED: hypothetical protein... 186 1e-045
gi|296088298|emb|CBI36743.3| unnamed protein product [Vitis vini... 186 2e-045
gi|255542562|ref|XP_002512344.1| excision repair cross-complemen... 173 1e-041
gi|168034367|ref|XP_001769684.1| predicted protein [Physcomitrel... 141 4e-032
gi|168034363|ref|XP_001769682.1| predicted protein [Physcomitrel... 139 3e-031
gi|115482968|ref|NP_001065077.1| Os10g0518900 [Oryza sativa Japo... 126 2e-027
gi|10122039|gb|AAG13428.1|AC051634_9 putative nucleotide repair ... 126 2e-027
gi|195657333|gb|ACG48134.1| mating-type switching protein swi10 ... 126 2e-027
gi|222613143|gb|EEE51275.1| hypothetical protein OsJ_32175 [Oryz... 126 2e-027
gi|212721946|ref|NP_001131279.1| hypothetical protein LOC1001925... 125 4e-027
gi|218184890|gb|EEC67317.1| hypothetical protein OsI_34337 [Oryz... 123 2e-026
gi|242033937|ref|XP_002464363.1| hypothetical protein SORBIDRAFT... 121 8e-026
gi|3297891|emb|CAA05781.1| nucleotide repair protein [Lilium lon... 119 2e-025
gi|224130994|ref|XP_002328427.1| predicted protein [Populus tric... 119 3e-025
gi|326512966|dbj|BAK03390.1| predicted protein [Hordeum vulgare ... 116 2e-024
gi|302782932|ref|XP_002973239.1| hypothetical protein SELMODRAFT... 111 5e-023
gi|126329589|ref|XP_001365997.1| PREDICTED: DNA excision repair ... 97 7e-019
gi|260593725|ref|NP_001159521.1| DNA excision repair protein ERC... 96 3e-018
>gi|297829042|ref|XP_002882403.1| hypothetical protein ARALYDRAFT_477808
[Arabidopsis lyrata subsp. lyrata]
Length = 407
Score = 281 bits (717), Expect = 5e-074
Identities = 145/179 (81%), Positives = 157/179 (87%), Gaps = 6/179 (3%)
Frame = +3
Query: 15 EDDDGEKSRGTPQQIGNKPKTQIVIGVPSYQEALESSQTKSTPPSLFKPSQTFSQAFAFV 194
EDDDGEKSR QQI KPKTQI+IGVPSYQE +ESSQTKSTPPSLFKPSQ+FSQAFAFV
Sbjct: 4 EDDDGEKSRSLHQQIAKKPKTQIIIGVPSYQEVIESSQTKSTPPSLFKPSQSFSQAFAFV 63
Query: 195 KSSDVYSPPPPPPL----SQQPNASQVPSTSQTLQTDVASSSSSAPVATTGSLSSNTTQP 362
KSSDVYSPPP SQ P ASQVP++SQ LQTD ASSSS+ PVA TGSL SNTTQ
Sbjct: 64 KSSDVYSPPPSSSAASSSSQPPGASQVPNSSQPLQTDGASSSST-PVA-TGSLPSNTTQT 121
Query: 363 RNAILVSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
RNAILVS+RQKGNPLLKHIRNVKWV+SDI+PDY+LGQ++CALYLSLRYHLLHPDYLYFR
Sbjct: 122 RNAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQSSCALYLSLRYHLLHPDYLYFR 180
>gi|15229933|ref|NP_187172.1| DNA excision repair protein ERCC-1 [Arabidopsis
thaliana]
Length = 410
Score = 276 bits (705), Expect = 1e-072
Identities = 147/180 (81%), Positives = 156/180 (86%), Gaps = 7/180 (3%)
Frame = +3
Query: 15 EDDDGEKSRGTPQQIGNKPKTQIVIGVPSYQEALESSQTKSTPPSLFKPSQTFSQAFAFV 194
EDDDGEKSR QQI KPKTQIVIGVPSYQE LESSQTKSTPPSLFKPSQ+FSQAFAFV
Sbjct: 4 EDDDGEKSRSLHQQIARKPKTQIVIGVPSYQEVLESSQTKSTPPSLFKPSQSFSQAFAFV 63
Query: 195 KSSDVYSPPPPPPL----SQQPNASQVP-STSQTLQTDVASSSSSAPVATTGSLSSNTTQ 359
KSSDVYSPPPP SQ ASQVP S+SQT QTD ASSSS+ PVA TGS+ SNTTQ
Sbjct: 64 KSSDVYSPPPPSSAAASSSQPSGASQVPHSSSQTHQTDGASSSST-PVA-TGSVPSNTTQ 121
Query: 360 PRNAILVSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
RNAILVS+RQKGNPLLKHIRNVKWV+SDI+PDY+LGQ +CALYLSLRYHLLHPDYLYFR
Sbjct: 122 NRNAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFR 181
>gi|225451021|ref|XP_002281063.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 452
Score = 186 bits (472), Expect = 1e-045
Identities = 104/181 (57%), Positives = 129/181 (71%), Gaps = 15/181 (8%)
Frame = +3
Query: 9 NEEDDDGEKSRGTPQQIGNKPKTQIVIGVPSYQEALESSQTKSTPPSLFKPSQTFSQAFA 188
N+E+++ ++ R + K K+ IVI +PSYQE LESSQ+K+T SLF PS +FSQAF+
Sbjct: 48 NKEEEEKQRERDDEK----KNKSSIVIKIPSYQEVLESSQSKTT-SSLFTPSPSFSQAFS 102
Query: 189 FVKSSDVYSPPPP-PPLSQQPNASQVP---STSQTLQTDVASSSSSAPVATTGSLSSNTT 356
FVKSS Y+PPPP P P +S+ P Q Q + SSSSS+P S +
Sbjct: 103 FVKSSQSYTPPPPATPPPPPPPSSRSPFHRLLGQVEQLEAPSSSSSSPSL------SRSA 156
Query: 357 QPRNAILVSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYF 536
Q RNAILVS+RQKGNPLLKHIRNV+W ++DIV DYLLGQ +CALYLSLRYHLLHPDYLY+
Sbjct: 157 QSRNAILVSHRQKGNPLLKHIRNVRWDFADIVCDYLLGQNSCALYLSLRYHLLHPDYLYY 216
Query: 537 R 539
R
Sbjct: 217 R 217
>gi|296088298|emb|CBI36743.3| unnamed protein product [Vitis vinifera]
Length = 398
Score = 186 bits (471), Expect = 2e-045
Identities = 100/158 (63%), Positives = 117/158 (74%), Gaps = 11/158 (6%)
Frame = +3
Query: 66 KPKTQIVIGVPSYQEALESSQTKSTPPSLFKPSQTFSQAFAFVKSSDVYSPPPPPPLSQQ 245
K K+ IVI +PSYQE LESSQ+K+T SLF PS +FSQAF+FVKSS Y+PPPP
Sbjct: 17 KNKSSIVIKIPSYQEVLESSQSKTT-SSLFTPSPSFSQAFSFVKSSQSYTPPPP----AT 71
Query: 246 PNASQVPSTSQTLQTDVASSSSSAPVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRN 425
P PS+ Q Q + SSSSS+P S + Q RNAILVS+RQKGNPLLKHIRN
Sbjct: 72 PPPPPPPSSRQVEQLEAPSSSSSSPSL------SRSAQSRNAILVSHRQKGNPLLKHIRN 125
Query: 426 VKWVYSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
V+W ++DIV DYLLGQ +CALYLSLRYHLLHPDYLY+R
Sbjct: 126 VRWDFADIVCDYLLGQNSCALYLSLRYHLLHPDYLYYR 163
>gi|255542562|ref|XP_002512344.1| excision repair cross-complementing 1 ercc1,
putative [Ricinus communis]
Length = 392
Score = 173 bits (438), Expect = 1e-041
Identities = 89/154 (57%), Positives = 112/154 (72%), Gaps = 16/154 (10%)
Frame = +3
Query: 78 QIVIGVPSYQEALESSQTKSTPPSLFKPSQTFSQAFAFVKSSDVYSPPPPPPLSQQPNAS 257
++VI +PSYQE +ESSQ T SLFKPSQTFSQAF+F+K S+ Y+PP P +S
Sbjct: 21 KVVIQIPSYQEVIESSQNPKT-ESLFKPSQTFSQAFSFIKDSEFYTPP--------PQSS 71
Query: 258 QVPSTSQTLQTDVASSSSSAPVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRNVKWV 437
V + + ++QT + S S VA TG+ RN+ILVS+RQKGNPLLKHIRNV+W
Sbjct: 72 AVSNNANSIQTTQSVPSPSQSVALTGNY-------RNSILVSHRQKGNPLLKHIRNVRWA 124
Query: 438 YSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
++D+V DYLLGQ C+LYLSLRYHLLHPDYLY+R
Sbjct: 125 FADVVCDYLLGQNCCSLYLSLRYHLLHPDYLYYR 158
>gi|168034367|ref|XP_001769684.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 285
Score = 141 bits (355), Expect = 4e-032
Identities = 76/145 (52%), Positives = 98/145 (67%), Gaps = 13/145 (8%)
Frame = +3
Query: 108 EALESSQTKSTPPSLFKPSQTFS-QAFAFVKSSDVYSPPPPPPLSQQPNASQVPSTSQTL 284
E LE S+ ++ PPS F+PS + + AF+FV+ ++ Y+PPP P P A S+ +
Sbjct: 12 EVLERSRPQA-PPSFFRPSSSAAPPAFSFVRQTEFYTPPPAAPTPTVPVA-----PSEGV 65
Query: 285 QTDVASSSSSAPVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRNVKWVYSDIVPDYL 464
+ S S + T S Q RNAILV+ RQ GNP+LK+IRNV+WV+ DIVPDYL
Sbjct: 66 PGNGVGSRSQEALPTVNS------QARNAILVNRRQTGNPVLKYIRNVRWVFGDIVPDYL 119
Query: 465 LGQTTCALYLSLRYHLLHPDYLYFR 539
LGQ+TCALY+SLRYHLLHPDYLYFR
Sbjct: 120 LGQSTCALYISLRYHLLHPDYLYFR 144
>gi|168034363|ref|XP_001769682.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 279
Score = 139 bits (348), Expect = 3e-031
Identities = 72/134 (53%), Positives = 91/134 (67%), Gaps = 12/134 (8%)
Frame = +3
Query: 141 PPSLFKPSQTFS-QAFAFVKSSDVYSPPPPPPLSQQPNASQVPSTSQTLQTDVASSSSSA 317
PPS F+PS + + AF+FV+ ++ Y+PPP P P A S+ + + S S
Sbjct: 16 PPSFFRPSSSAAPPAFSFVRQTEFYTPPPAAPTPTVPVA-----PSEGVPGNGVGSRSQE 70
Query: 318 PVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCALYLS 497
+ T S Q RNAILV+ RQ GNP+LK+IRNV+WV+ DIVPDYLLGQ+TCALY+S
Sbjct: 71 ALPTVNS------QARNAILVNRRQTGNPVLKYIRNVRWVFGDIVPDYLLGQSTCALYIS 124
Query: 498 LRYHLLHPDYLYFR 539
LRYHLLHPDYLYFR
Sbjct: 125 LRYHLLHPDYLYFR 138
>gi|115482968|ref|NP_001065077.1| Os10g0518900 [Oryza sativa Japonica Group]
Length = 387
Score = 126 bits (315), Expect = 2e-027
Identities = 62/114 (54%), Positives = 76/114 (66%), Gaps = 4/114 (3%)
Frame = +3
Query: 210 YSPPPPPPLSQQPNASQVPSTSQTLQTDVASSSSSAPVATT----GSLSSNTTQPRNAIL 377
Y+PPP S ++S L++ S P TT SS P+NAIL
Sbjct: 47 YNPPPTTAASSSSSSSSFSQAFSFLKSTEFYSPPPPPPQTTTPRPPQASSAAQAPKNAIL 106
Query: 378 VSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
VS+RQKGNPLLKHIRN +W Y+DIVPDY+LGQ++CALY+SLRYHLLHPDYLY+R
Sbjct: 107 VSHRQKGNPLLKHIRNARWTYADIVPDYVLGQSSCALYISLRYHLLHPDYLYYR 160
>gi|10122039|gb|AAG13428.1|AC051634_9 putative nucleotide repair protein [Oryza
sativa Japonica Group]
Length = 395
Score = 126 bits (315), Expect = 2e-027
Identities = 62/114 (54%), Positives = 76/114 (66%), Gaps = 4/114 (3%)
Frame = +3
Query: 210 YSPPPPPPLSQQPNASQVPSTSQTLQTDVASSSSSAPVATT----GSLSSNTTQPRNAIL 377
Y+PPP S ++S L++ S P TT SS P+NAIL
Sbjct: 47 YNPPPTTAASSSSSSSSFSQAFSFLKSTEFYSPPPPPPQTTTPRPPQASSAAQAPKNAIL 106
Query: 378 VSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
VS+RQKGNPLLKHIRN +W Y+DIVPDY+LGQ++CALY+SLRYHLLHPDYLY+R
Sbjct: 107 VSHRQKGNPLLKHIRNARWTYADIVPDYVLGQSSCALYISLRYHLLHPDYLYYR 160
>gi|195657333|gb|ACG48134.1| mating-type switching protein swi10 [Zea mays]
Length = 396
Score = 126 bits (315), Expect = 2e-027
Identities = 72/154 (46%), Positives = 95/154 (61%), Gaps = 10/154 (6%)
Frame = +3
Query: 84 VIGVPSYQEAL--ESSQTKSTPPSLFKPSQTFSQAFAFVKSSDVYSPPPPPPLSQQPNAS 257
+I +PSYQE +S + S PPS P T + A A SS S SQ S
Sbjct: 19 LIKIPSYQEVFGTGASSSSSKPPSYNPPVATSAAAAASSSSSSSGS------FSQA--FS 70
Query: 258 QVPSTSQTLQTDVASSSSSAPVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRNVKWV 437
+ S+ ++ P T S S+ T Q +N+ILVS+RQ+GNPLLKHIRN +W
Sbjct: 71 FLKSSEFYSPPPPPPQPTTTPRPTQASPSAPTPQSKNSILVSHRQRGNPLLKHIRNARWT 130
Query: 438 YSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
++D+VPDY+LGQ++CALYLS+RYHLLHPDYLY+R
Sbjct: 131 FADVVPDYVLGQSSCALYLSIRYHLLHPDYLYYR 164
>gi|222613143|gb|EEE51275.1| hypothetical protein OsJ_32175 [Oryza sativa
Japonica Group]
Length = 430
Score = 126 bits (315), Expect = 2e-027
Identities = 62/114 (54%), Positives = 76/114 (66%), Gaps = 4/114 (3%)
Frame = +3
Query: 210 YSPPPPPPLSQQPNASQVPSTSQTLQTDVASSSSSAPVATT----GSLSSNTTQPRNAIL 377
Y+PPP S ++S L++ S P TT SS P+NAIL
Sbjct: 90 YNPPPTTAASSSSSSSSFSQAFSFLKSTEFYSPPPPPPQTTTPRPPQASSAAQAPKNAIL 149
Query: 378 VSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
VS+RQKGNPLLKHIRN +W Y+DIVPDY+LGQ++CALY+SLRYHLLHPDYLY+R
Sbjct: 150 VSHRQKGNPLLKHIRNARWTYADIVPDYVLGQSSCALYISLRYHLLHPDYLYYR 203
>gi|212721946|ref|NP_001131279.1| hypothetical protein LOC100192592 [Zea mays]
Length = 397
Score = 125 bits (312), Expect = 4e-027
Identities = 70/154 (45%), Positives = 93/154 (60%), Gaps = 9/154 (5%)
Frame = +3
Query: 84 VIGVPSYQEAL--ESSQTKSTPPSLFKPSQTFSQAFAFVKSSDVYSPPPPPPLSQQPNAS 257
+I +PSYQE +S + S PPS P T + A A SS S Q +
Sbjct: 19 LIKIPSYQEVFGTGASTSSSKPPSYNPPVATSAAAAASSSSSSSGS-------FSQAFSF 71
Query: 258 QVPSTSQTLQTDVASSSSSAPVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRNVKWV 437
S + ++ P T S S+ T Q +N+ILVS+RQ+GNPLLKHIRN +W
Sbjct: 72 LKSSEFYSPPPPPPPQPTTTPRPTQASPSAPTPQSKNSILVSHRQRGNPLLKHIRNARWT 131
Query: 438 YSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
++D+VPDY+LGQ++CALYLS+RYHLLHPDYLY+R
Sbjct: 132 FADVVPDYVLGQSSCALYLSIRYHLLHPDYLYYR 165
>gi|218184890|gb|EEC67317.1| hypothetical protein OsI_34337 [Oryza sativa Indica
Group]
Length = 430
Score = 123 bits (307), Expect = 2e-026
Identities = 61/114 (53%), Positives = 75/114 (65%), Gaps = 4/114 (3%)
Frame = +3
Query: 210 YSPPPPPPLSQQPNASQVPSTSQTLQTDVASSSSSAPVATT----GSLSSNTTQPRNAIL 377
Y+P P S ++S L++ S P TT SS P+NAIL
Sbjct: 90 YNPAPTTAASSSSSSSSFSQAFSFLKSTEFYSPPPPPPQTTTPRPPQASSAAQAPKNAIL 149
Query: 378 VSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
VS+RQKGNPLLKHIRN +W Y+DIVPDY+LGQ++CALY+SLRYHLLHPDYLY+R
Sbjct: 150 VSHRQKGNPLLKHIRNARWTYADIVPDYVLGQSSCALYISLRYHLLHPDYLYYR 203
>gi|242033937|ref|XP_002464363.1| hypothetical protein SORBIDRAFT_01g016980
[Sorghum bicolor]
Length = 397
Score = 121 bits (301), Expect = 8e-026
Identities = 65/153 (42%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Frame = +3
Query: 84 VIGVPSYQEAL-ESSQTKSTPPSLFKPSQTFSQAFAFVKSSDVYSPPPPPPLSQQPNASQ 260
+I +PSYQE + + S+ P+ + P S A +S S SQ + +
Sbjct: 19 LIKIPSYQEVFGTGASSSSSKPASYNPPLASSGGTAAAAASS--SSSSSGSFSQAFSFLK 76
Query: 261 VPSTSQTLQTDVASSSSSAPVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRNVKWVY 440
+++ P S S+ T Q +NAILVS+RQ+GNPLLKHIRN +W +
Sbjct: 77 SSEFYSPPPPPPPQPTTTTPRPPQASPSAPTRQSKNAILVSHRQRGNPLLKHIRNARWTF 136
Query: 441 SDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
+D+VPDY+LGQ++CALYLS+RYHLLHPDYLY+R
Sbjct: 137 ADVVPDYVLGQSSCALYLSIRYHLLHPDYLYYR 169
>gi|3297891|emb|CAA05781.1| nucleotide repair protein [Lilium longiflorum]
Length = 278
Score = 119 bits (297), Expect = 2e-025
Identities = 57/85 (67%), Positives = 69/85 (81%), Gaps = 7/85 (8%)
Frame = +3
Query: 285 QTDVASSSSSAPVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRNVKWVYSDIVPDYL 464
Q+ +S+ ++AP G Q RNAILVS+RQKGNPLLKHIRNVKWV++DIV DYL
Sbjct: 11 QSSSSSTGAAAPAVAAG-------QNRNAILVSHRQKGNPLLKHIRNVKWVFADIVCDYL 63
Query: 465 LGQTTCALYLSLRYHLLHPDYLYFR 539
+GQ++CALYLSLRYHLLHPDYLY+R
Sbjct: 64 VGQSSCALYLSLRYHLLHPDYLYYR 88
>gi|224130994|ref|XP_002328427.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 119 bits (296), Expect = 3e-025
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 2/80 (2%)
Frame = +3
Query: 300 SSSSSAPVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTT 479
S S P + S+ +N Q RNAILVS+RQKGNPLLKHIRNVKW ++D+V DYLLGQ++
Sbjct: 75 SKSEHGPSMASSSVQNN--QSRNAILVSHRQKGNPLLKHIRNVKWAFADVVCDYLLGQSS 132
Query: 480 CALYLSLRYHLLHPDYLYFR 539
CALYLSLRYHLLHPDYLY+R
Sbjct: 133 CALYLSLRYHLLHPDYLYYR 152
>gi|326512966|dbj|BAK03390.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 388
Score = 116 bits (289), Expect = 2e-024
Identities = 49/77 (63%), Positives = 65/77 (84%)
Frame = +3
Query: 309 SSAPVATTGSLSSNTTQPRNAILVSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCAL 488
S++P ++ +Q +N+ILVSNRQKGNPLLKHIRN +W ++DIVPDY++GQ++CAL
Sbjct: 85 STSPRPPLAGATTTPSQSKNSILVSNRQKGNPLLKHIRNARWTFADIVPDYVIGQSSCAL 144
Query: 489 YLSLRYHLLHPDYLYFR 539
Y+SLRYHLLHPDYLY+R
Sbjct: 145 YISLRYHLLHPDYLYYR 161
>gi|302782932|ref|XP_002973239.1| hypothetical protein SELMODRAFT_98787
[Selaginella moellendorffii]
Length = 232
Score = 111 bits (277), Expect = 5e-023
Identities = 51/73 (69%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Frame = +3
Query: 324 ATTGSLS-SNTTQPRNAILVSNRQKGNPLLKHIRNVKWVYSDIVPDYLLGQTTCALYLSL 500
A G+ S ++ +Q RNAILVS RQ+GNP+LK IRNV+W + DIVPDY+LGQ++CALYLS+
Sbjct: 2 APAGAASGASNSQSRNAILVSRRQQGNPVLKFIRNVRWTFDDIVPDYVLGQSSCALYLSI 61
Query: 501 RYHLLHPDYLYFR 539
RYHLLHPDYLYFR
Sbjct: 62 RYHLLHPDYLYFR 74
>gi|126329589|ref|XP_001365997.1| PREDICTED: DNA excision repair protein
ERCC-1-like [Monodelphis domestica]
Length = 326
Score = 97 bits (241), Expect = 7e-019
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Frame = +3
Query: 228 PPLSQQPNASQVPSTSQTLQTDVASSSSSAPVATTGSLSSNTTQPRNAILVSNRQKGNPL 407
PPL QP P + + + A G T N+ILVS RQ+GNP+
Sbjct: 83 PPLGAQPGVP--PQRALPEEAAPSLGPPGGDTANQGPQGPKPTTKSNSILVSPRQRGNPV 140
Query: 408 LKHIRNVKWVYSDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
LK IRNV W + +IVPDY+LGQ+TCAL+LSLRYH LHP+Y++ R
Sbjct: 141 LKFIRNVPWEFGEIVPDYVLGQSTCALFLSLRYHNLHPNYIHER 184
>gi|260593725|ref|NP_001159521.1| DNA excision repair protein ERCC-1 isoform 3
[Homo sapiens]
Length = 273
Score = 96 bits (236), Expect = 3e-018
Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 14/153 (9%)
Frame = +3
Query: 90 GVPSYQEALESSQTKSTPPSLFKPSQTFSQAFAFVKSSDVYSPPPPPPLSQQPNASQVPS 269
G P+ ++ + PP + KP +Q+ V D + P ++ + +
Sbjct: 15 GPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTV---DTSAQAAPQTYAEYAISQPLEG 71
Query: 270 TSQTLQTDVASSSSSAPVATTGSLSSNTTQP---RNAILVSNRQKGNPLLKHIRNVKWVY 440
T T S P+A G + +P N+I+VS RQ+GNP+LK +RNV W +
Sbjct: 72 AGATCPT------GSEPLA--GETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVPWEF 123
Query: 441 SDIVPDYLLGQTTCALYLSLRYHLLHPDYLYFR 539
D++PDY+LGQ+TCAL+LSLRYH LHPDY++ R
Sbjct: 124 GDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGR 156
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,093,974,624,356
Number of Sequences: 15229318
Number of Extensions: 1093974624356
Number of Successful Extensions: 299540451
Number of sequences better than 0.0: 0
|
