BLASTX 7.6.2
Query= UN78597 /QuerySize=586
(585 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G16610.1 | Symbols: SR45 | SR45; RNA binding /... 198 2e-051
TAIR9_protein||AT1G16610.2 | Symbols: SR45 | SR45; RNA binding /... 198 2e-051
TAIR9_protein||AT1G79100.1 | Symbols: | arginine/serine-rich pr... 63 1e-010
TAIR9_protein||AT2G27330.1 | Symbols: | RNA recognition motif (... 60 1e-009
TAIR9_protein||AT4G20030.1 | Symbols: | RNA recognition motif (... 59 2e-009
TAIR9_protein||AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine... 57 9e-009
TAIR9_protein||AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-bin... 56 2e-008
TAIR9_protein||AT2G37510.1 | Symbols: | RNA-binding protein, pu... 54 8e-008
TAIR9_protein||AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1-70K (... 51 4e-007
TAIR9_protein||AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / p... 51 5e-007
TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine... 51 5e-007
TAIR9_protein||AT4G00830.1 | Symbols: | RNA recognition motif (... 50 1e-006
TAIR9_protein||AT4G00830.2 | Symbols: | RNA recognition motif (... 50 1e-006
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 48 3e-006
TAIR9_protein||AT3G20930.1 | Symbols: | RNA recognition motif (... 48 3e-006
TAIR9_protein||AT1G71800.1 | Symbols: | cleavage stimulation fa... 47 7e-006
>TAIR9_protein||AT1G16610.1 | Symbols: SR45 | SR45; RNA binding / protein
binding | chr1:5675925-5678686 REVERSE
Length = 415
Score = 198 bits (503), Expect = 2e-051
Identities = 98/130 (75%), Positives = 110/130 (84%), Gaps = 5/130 (3%)
Frame = +1
Query: 208 PPPPPPRG-----KRKATESLVLHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNL 372
PPPPP +G K+ ESLVLHV SLSRNVNE HLKEIFGN+GEV+HVE+A+DRAVNL
Sbjct: 78 PPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNL 137
Query: 373 PKGYAYVEFKARADAEKALLFMDGDQIDGNVVKAKFTLPARQKVSSPPKPVSSEPKREAP 552
P+G+ YVEFKARADAEKA L+MDG QIDG VVKA FTLP RQKVSSPPKPVS+ PKR+AP
Sbjct: 138 PRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKPVSAAPKRDAP 197
Query: 553 KPDNAAADVD 582
K DNAAAD +
Sbjct: 198 KSDNAAADAE 207
Score = 49 bits (114), Expect = 3e-006
Identities = 33/45 (73%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Frame = +2
Query: 59 MAKASRGRRSPSVSGSSSRSSS-SRS-RSRSRSLSSSSSFLRGAS 187
MAK SRGRRSPSVSGSSSRSSS SRS S SRS+S S S R S
Sbjct: 1 MAKPSRGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLS 45
>TAIR9_protein||AT1G16610.2 | Symbols: SR45 | SR45; RNA binding / protein
binding | chr1:5675925-5678686 REVERSE
Length = 408
Score = 198 bits (503), Expect = 2e-051
Identities = 98/130 (75%), Positives = 110/130 (84%), Gaps = 5/130 (3%)
Frame = +1
Query: 208 PPPPPPRG-----KRKATESLVLHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNL 372
PPPPP +G K+ ESLVLHV SLSRNVNE HLKEIFGN+GEV+HVE+A+DRAVNL
Sbjct: 78 PPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNL 137
Query: 373 PKGYAYVEFKARADAEKALLFMDGDQIDGNVVKAKFTLPARQKVSSPPKPVSSEPKREAP 552
P+G+ YVEFKARADAEKA L+MDG QIDG VVKA FTLP RQKVSSPPKPVS+ PKR+AP
Sbjct: 138 PRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKPVSAAPKRDAP 197
Query: 553 KPDNAAADVD 582
K DNAAAD +
Sbjct: 198 KSDNAAADAE 207
Score = 49 bits (114), Expect = 3e-006
Identities = 33/45 (73%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Frame = +2
Query: 59 MAKASRGRRSPSVSGSSSRSSS-SRS-RSRSRSLSSSSSFLRGAS 187
MAK SRGRRSPSVSGSSSRSSS SRS S SRS+S S S R S
Sbjct: 1 MAKPSRGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLS 45
>TAIR9_protein||AT1G79100.1 | Symbols: | arginine/serine-rich protein-related |
chr1:29753648-29754388 FORWARD
Length = 71
Score = 63 bits (152), Expect = 1e-010
Identities = 30/44 (68%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Frame = +1
Query: 316 GNYGEVVHVELAIDRAVNLPKGYAYVEFKAR-ADAEKALLFMDG 444
G++GE++HV+LAIDRA NL +G AYVEFKA+ ADAEK L+MDG
Sbjct: 9 GDFGEIIHVQLAIDRAANLSRGDAYVEFKAKIADAEKPQLYMDG 52
>TAIR9_protein||AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:11695350-11696563 REVERSE
Length = 117
Score = 60 bits (143), Expect = 1e-009
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +1
Query: 250 SLVLHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARADAEKAL 429
S L V +S + E+ L + F YG+V+ V++ +D+ PKG+AYV F ++ +AEKAL
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 430 LFMDGDQIDGNVVKAKFTLPARQKVSSPP 516
L ++ +DG VV T A+ +PP
Sbjct: 80 LELNAQLVDGRVVILDTTKAAKH---NPP 105
>TAIR9_protein||AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:10846362-10847246 FORWARD
Length = 153
Score = 59 bits (140), Expect = 2e-009
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Frame = +1
Query: 265 VGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARADAEKALLFMDG 444
V +L + +ED LK F +GE+ V+L D A+ KGYA+++F ++ DA A+ MD
Sbjct: 44 VRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDR 103
Query: 445 DQIDGNVVKAKFTLPARQKVSSPPKPVSSEPKREAPKPDNAAAD 576
+G ++ P ++ P+ +S P ++ +P+ AA D
Sbjct: 104 RMYNGRMIYIDIAKPGKRDFQGLPR--TSGPPEKSDEPEEAAND 145
>TAIR9_protein||AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich
RNA-binding protein 3); ATP binding / RNA binding |
chr5:24560870-24562152 FORWARD
Length = 310
Score = 57 bits (135), Expect = 9e-009
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +1
Query: 238 KATESLVLHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARADA 417
+ S L +G ++ +++ED L+E F YGEVV + +DR +G+ +V F + A
Sbjct: 35 RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94
Query: 418 EKALLFMDGDQIDGNVVKAKF 480
A+ +DG + G VVK +
Sbjct: 95 SSAIQALDGRDLHGRVVKVNY 115
>TAIR9_protein||AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding protein 45
(RBP45), putative | chr1:3914895-3917941 FORWARD
Length = 406
Score = 56 bits (133), Expect = 2e-008
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Frame = +1
Query: 265 VGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARADAEKALLFMDG 444
VG L +V +DHLK +F YGE+VHV++ K +V+F ++ AE+AL ++G
Sbjct: 265 VGGLDASVTDDHLKNVFSQYGEIVHVKIPAG------KRCGFVQFSEKSCAEEALRMLNG 318
Query: 445 DQIDGNVVKAKFTLPARQKVSSPP 516
Q+ G V+ + K S P
Sbjct: 319 VQLGGTTVRLSWGRSPSNKQSGDP 342
>TAIR9_protein||AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15743112-15744504 REVERSE
Length = 143
Score = 54 bits (127), Expect = 8e-008
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Frame = +1
Query: 178 RSVSSGSRSPPPPPPPRGKRKAT-ESLVLHVGSLSRNVNEDHLKEIFGNYGEVVHVELAI 354
R + +GS S P +R +T S L V LSR + L++ F ++G++V +
Sbjct: 8 RRLVAGSSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVIT 67
Query: 355 DRAVNLPKGYAYVEFKARADAEKALLFMDGDQIDGNVVKAKFTLPARQKVSSPPKPVSSE 534
DR KG+ +V + DAEKA M+ +DG V+ F PAR + P +P+ E
Sbjct: 68 DRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVI---FVDPARPR--EPRRPLQQE 122
Query: 535 PKR 543
P R
Sbjct: 123 PLR 125
>TAIR9_protein||AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1-70K (U1 SMALL
NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid binding /
nucleotide binding | chr3:18826476-18829492 REVERSE
Length = 428
Score = 51 bits (121), Expect = 4e-007
Identities = 26/70 (37%), Positives = 37/70 (52%)
Frame = +1
Query: 259 LHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARADAEKALLFM 438
L V L+ +E +K F +YG + V L D+ N PKGYA++E+ D + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 439 DGDQIDGNVV 468
DG +IDG V
Sbjct: 200 DGQKIDGRRV 209
>TAIR9_protein||AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / protein binding
| chr1:19103072-19104753 REVERSE
Length = 203
Score = 51 bits (120), Expect = 5e-007
Identities = 20/75 (26%), Positives = 44/75 (58%)
Frame = +1
Query: 229 GKRKATESLVLHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKAR 408
G +++ E ++ V + E+ + FG++GE+ ++ L +DR KGYA +E++ +
Sbjct: 87 GPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKK 146
Query: 409 ADAEKALLFMDGDQI 453
+A+ A+ M+G ++
Sbjct: 147 EEAQSAISAMNGAEL 161
>TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich
RNA-binding protein 5); ATP binding / RNA binding |
chr1:27915346-27916857 FORWARD
Length = 290
Score = 51 bits (120), Expect = 5e-007
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 238 KATESLVLHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARADA 417
+ S + VG +S + +E L+E F YGEVV ++ +DR +G+A+V F + +A
Sbjct: 29 RCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEA 88
Query: 418 EKALLFMDGDQIDGNVVKAKF 480
A+ +DG + G ++ +
Sbjct: 89 SNAMQ-LDGQDLHGRRIRVNY 108
>TAIR9_protein||AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 496
Score = 50 bits (117), Expect = 1e-006
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Frame = +1
Query: 205 PPPPPPPRGKRKATESLVL-------HVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRA 363
PP P + K + L L +G L R+V E+ L+++ GE+ V L DR
Sbjct: 93 PPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRD 152
Query: 364 VNLPKGYAYVEFKARADAEKALLFMDGDQIDGNVVKAKFT 483
KGYA+V FK + A+KA+ + + G ++ +
Sbjct: 153 SGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS 192
>TAIR9_protein||AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 496
Score = 50 bits (117), Expect = 1e-006
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Frame = +1
Query: 205 PPPPPPPRGKRKATESLVL-------HVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRA 363
PP P + K + L L +G L R+V E+ L+++ GE+ V L DR
Sbjct: 93 PPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRD 152
Query: 364 VNLPKGYAYVEFKARADAEKALLFMDGDQIDGNVVKAKFT 483
KGYA+V FK + A+KA+ + + G ++ +
Sbjct: 153 SGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS 192
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 48 bits (113), Expect = 3e-006
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +1
Query: 259 LHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARADAEKALLFM 438
L+VG L NV + L + F +VV V + D A N GY YV + DAEKA+ +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 439 DGDQIDGNVVKAKFT 483
+ ++G +++ ++
Sbjct: 108 NYSYLNGKMIRITYS 122
>TAIR9_protein||AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331739-7333749 FORWARD
Length = 375
Score = 48 bits (113), Expect = 3e-006
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Frame = +1
Query: 217 PPPRGKRKATESLVLHVGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVE 396
PP + K+ L + LS +E L+ F +GE+V V++ +D+ KGYA++E
Sbjct: 277 PPVKTKK-------LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLE 329
Query: 397 FKARADAEKALLFMDGDQIDG--NVVKAKFTLPARQKVSSP 513
+ A AL M+G I+G VV T P RQ S P
Sbjct: 330 YTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFRQNRSQP 370
>TAIR9_protein||AT1G71800.1 | Symbols: | cleavage stimulation factor, putative
| chr1:26999606-27001850 FORWARD
Length = 462
Score = 47 bits (110), Expect = 7e-006
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +1
Query: 265 VGSLSRNVNEDHLKEIFGNYGEVVHVELAIDRAVNLPKGYAYVEFKARADAEKALLFMDG 444
VG++ + E+ L+EI G G VV L DR PKGY + E+K A A +
Sbjct: 13 VGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQS 72
Query: 445 DQIDGNVVKAKF 480
+I+G ++ F
Sbjct: 73 YEINGRQLRVDF 84
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,252,145,367
Number of Sequences: 33410
Number of Extensions: 33252145367
Number of Successful Extensions: 1129160757
Number of sequences better than 0.0: 0
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