Library    |     Search    |     Batch query    |     SNP    |     SSR  

GenBank blast output of UN80645


BLASTX 7.6.2

Query= UN80645 /QuerySize=724
        (723 letters)

Database: GenBank nr;
          15,229,318 sequences; 5,219,829,378 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

gi|297850016|ref|XP_002892889.1| methyladenine glycosylase famil...    159   3e-037
gi|15218379|ref|NP_173049.1| DNA glycosylase-like protein [Arabi...    158   1e-036
gi|15220860|ref|NP_178200.1| methyladenine glycosylase-like prot...    120   2e-025
gi|297839853|ref|XP_002887808.1| hypothetical protein ARALYDRAFT...     79   6e-013

>gi|297850016|ref|XP_002892889.1| methyladenine glycosylase family protein
        [Arabidopsis lyrata subsp. lyrata]

          Length = 354

 Score =  159 bits (402), Expect = 3e-037
 Identities = 104/161 (64%), Positives = 115/161 (71%), Gaps = 31/161 (19%)
 Frame = +2

Query: 239 SDPPRFRSVLGPTGNKPQRKPPGMM-------KKT-VESKDEKKTKKPPDTTPDSPTTTL 394
           SD   FRSVLGPTGNK QRKPPGM        KKT +ESKDE +TKKP  TTP SP TTL
Sbjct:  12 SDEREFRSVLGPTGNKLQRKPPGMKLEKPMIEKKTIIESKDE-ETKKP--TTPASPRTTL 68

Query: 395 KQ----CSSILRRNTASSMTASYSSDASSSCDSLPLSVASSSSTCKKKPVSRRGGSVSSS 562
           KQ    CSSILR+N+A SMTASYSSDASSSC+S PLSVASSSS CKK  V RR GSVSS+
Sbjct:  69 KQCSSLCSSILRKNSA-SMTASYSSDASSSCESSPLSVASSSS-CKK--VMRRSGSVSST 124

Query: 563 ASGALMRRKQVDEKEDKAAAAAAGNADCFADGRKRCAWITP 685
                 R+  + ++EDK A       DCFADGR+RCAWITP
Sbjct: 125 ------RKLSIGKEEDKVA------GDCFADGRRRCAWITP 153

>gi|15218379|ref|NP_173049.1| DNA glycosylase-like protein [Arabidopsis
        thaliana]

          Length = 352

 Score =  158 bits (398), Expect = 1e-036
 Identities = 99/159 (62%), Positives = 112/159 (70%), Gaps = 28/159 (17%)
 Frame = +2

Query: 239 SDPPRFRSVLGPTGNKPQRKPPG------MMKKTVESKDEKKTKKPPDTTPDSPTTTLKQ 400
           SD   FRSVLGPTGNK QRKPPG      MM+KT+    ++K KKP  TTP SP TTLKQ
Sbjct:  12 SDEREFRSVLGPTGNKLQRKPPGMKLEKPMMEKTIIDSKDEKAKKP--TTPASPRTTLKQ 69

Query: 401 ----CSSILRRNTASSMTASYSSDASSSCDSLPLSVASSSSTCKKKPVSRRGGSVSSSAS 568
               CSSILR+N+A SMTASYSSDASSSC+S PLSVASSSS CKK  V RR GSVSS+  
Sbjct:  70 CSSLCSSILRKNSA-SMTASYSSDASSSCESSPLSVASSSS-CKK--VVRRSGSVSST-- 123

Query: 569 GALMRRKQVDEKEDKAAAAAAGNADCFADGRKRCAWITP 685
               R+  V ++E+K       + DCFADGRKRCAWITP
Sbjct: 124 ----RKLSVGKEEEKV------SGDCFADGRKRCAWITP 152

>gi|15220860|ref|NP_178200.1| methyladenine glycosylase-like protein
        [Arabidopsis thaliana]

          Length = 327

 Score =  120 bits (300), Expect = 2e-025
 Identities = 84/163 (51%), Positives = 99/163 (60%), Gaps = 35/163 (21%)
 Frame = +2

Query: 236 MSDPPR----------FRSVLGPTGNKPQRKPPGM-MKKTVESKDEKK--TKKPPDTTPD 376
           MS PPR          FRSVLGP GNK Q+KP    +KK V  K +    T+K P  +P 
Sbjct:   1 MSAPPRVRSVDSSDREFRSVLGPAGNKLQQKPLSKPVKKPVAEKTKNLTFTEKMPQCSPL 60

Query: 377 SPTTTLKQCSSILRRNTASSMTASYSSDASSSCDSLPLSVASSSSTCKKKPVSRRGGSVS 556
           SP         ILRRN   SMTASYSSDASSSC+S PLS+ S+SS    K V RR GSVS
Sbjct:  61 SP--------PILRRN-GISMTASYSSDASSSCESSPLSMTSTSS---GKRVLRRSGSVS 108

Query: 557 SSASGALMRRKQVDEKEDKAAAAAAGNADCFADGRKRCAWITP 685
           SS+S   +RR   +E+++KA       +DCF DGRKRCAWITP
Sbjct: 109 SSSS---LRRNLTEERDEKA-------SDCFCDGRKRCAWITP 141

>gi|297839853|ref|XP_002887808.1| hypothetical protein ARALYDRAFT_477160
        [Arabidopsis lyrata subsp. lyrata]

          Length = 323

 Score =  79 bits (193), Expect = 6e-013
 Identities = 62/134 (46%), Positives = 80/134 (59%), Gaps = 18/134 (13%)
 Frame = +2

Query: 236 MSDPPRFRSVLGPTGNKPQRKPPGMMKKTVESKDEKKTKKP-PDTTPD-SPTTTLKQCS- 406
           MS PPR RSV     +   R+   ++        +K  KKP  D T + + T  + QCS 
Sbjct:   1 MSAPPRVRSV-----DSSDREFRSVLGPAGNKLQQKPLKKPVADKTKNLTFTKNMPQCSP 55

Query: 407 ---SILRRNTASSMTASYSSDASSSCDSLPLSVASSSSTCKKKPVSRRGGSVSSSASGAL 577
              SILRRN   SMTASYSSDASSSC+S PLSVAS+SS    K   RR GS+SSS+S   
Sbjct:  56 LSPSILRRN-GISMTASYSSDASSSCESSPLSVASTSS---GKRALRRSGSLSSSSS--- 108

Query: 578 MRRKQVDEKEDKAA 619
           +RR   +E+++KA+
Sbjct: 109 LRRNLTEERDEKAS 122

  Database: GenBank nr
    Posted date:  Thu Sep 08 23:06:31 2011
  Number of letters in database: 5,219,829,378
  Number of sequences in database:  15,229,318

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,178,980,611,991
Number of Sequences: 15229318
Number of Extensions: 1178980611991
Number of Successful Extensions: 310660920
Number of sequences better than 0.0: 0