BLASTX 7.6.2
Query= UN80645 /QuerySize=724
(723 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297850016|ref|XP_002892889.1| methyladenine glycosylase famil... 159 3e-037
gi|15218379|ref|NP_173049.1| DNA glycosylase-like protein [Arabi... 158 1e-036
gi|15220860|ref|NP_178200.1| methyladenine glycosylase-like prot... 120 2e-025
gi|297839853|ref|XP_002887808.1| hypothetical protein ARALYDRAFT... 79 6e-013
>gi|297850016|ref|XP_002892889.1| methyladenine glycosylase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 354
Score = 159 bits (402), Expect = 3e-037
Identities = 104/161 (64%), Positives = 115/161 (71%), Gaps = 31/161 (19%)
Frame = +2
Query: 239 SDPPRFRSVLGPTGNKPQRKPPGMM-------KKT-VESKDEKKTKKPPDTTPDSPTTTL 394
SD FRSVLGPTGNK QRKPPGM KKT +ESKDE +TKKP TTP SP TTL
Sbjct: 12 SDEREFRSVLGPTGNKLQRKPPGMKLEKPMIEKKTIIESKDE-ETKKP--TTPASPRTTL 68
Query: 395 KQ----CSSILRRNTASSMTASYSSDASSSCDSLPLSVASSSSTCKKKPVSRRGGSVSSS 562
KQ CSSILR+N+A SMTASYSSDASSSC+S PLSVASSSS CKK V RR GSVSS+
Sbjct: 69 KQCSSLCSSILRKNSA-SMTASYSSDASSSCESSPLSVASSSS-CKK--VMRRSGSVSST 124
Query: 563 ASGALMRRKQVDEKEDKAAAAAAGNADCFADGRKRCAWITP 685
R+ + ++EDK A DCFADGR+RCAWITP
Sbjct: 125 ------RKLSIGKEEDKVA------GDCFADGRRRCAWITP 153
>gi|15218379|ref|NP_173049.1| DNA glycosylase-like protein [Arabidopsis
thaliana]
Length = 352
Score = 158 bits (398), Expect = 1e-036
Identities = 99/159 (62%), Positives = 112/159 (70%), Gaps = 28/159 (17%)
Frame = +2
Query: 239 SDPPRFRSVLGPTGNKPQRKPPG------MMKKTVESKDEKKTKKPPDTTPDSPTTTLKQ 400
SD FRSVLGPTGNK QRKPPG MM+KT+ ++K KKP TTP SP TTLKQ
Sbjct: 12 SDEREFRSVLGPTGNKLQRKPPGMKLEKPMMEKTIIDSKDEKAKKP--TTPASPRTTLKQ 69
Query: 401 ----CSSILRRNTASSMTASYSSDASSSCDSLPLSVASSSSTCKKKPVSRRGGSVSSSAS 568
CSSILR+N+A SMTASYSSDASSSC+S PLSVASSSS CKK V RR GSVSS+
Sbjct: 70 CSSLCSSILRKNSA-SMTASYSSDASSSCESSPLSVASSSS-CKK--VVRRSGSVSST-- 123
Query: 569 GALMRRKQVDEKEDKAAAAAAGNADCFADGRKRCAWITP 685
R+ V ++E+K + DCFADGRKRCAWITP
Sbjct: 124 ----RKLSVGKEEEKV------SGDCFADGRKRCAWITP 152
>gi|15220860|ref|NP_178200.1| methyladenine glycosylase-like protein
[Arabidopsis thaliana]
Length = 327
Score = 120 bits (300), Expect = 2e-025
Identities = 84/163 (51%), Positives = 99/163 (60%), Gaps = 35/163 (21%)
Frame = +2
Query: 236 MSDPPR----------FRSVLGPTGNKPQRKPPGM-MKKTVESKDEKK--TKKPPDTTPD 376
MS PPR FRSVLGP GNK Q+KP +KK V K + T+K P +P
Sbjct: 1 MSAPPRVRSVDSSDREFRSVLGPAGNKLQQKPLSKPVKKPVAEKTKNLTFTEKMPQCSPL 60
Query: 377 SPTTTLKQCSSILRRNTASSMTASYSSDASSSCDSLPLSVASSSSTCKKKPVSRRGGSVS 556
SP ILRRN SMTASYSSDASSSC+S PLS+ S+SS K V RR GSVS
Sbjct: 61 SP--------PILRRN-GISMTASYSSDASSSCESSPLSMTSTSS---GKRVLRRSGSVS 108
Query: 557 SSASGALMRRKQVDEKEDKAAAAAAGNADCFADGRKRCAWITP 685
SS+S +RR +E+++KA +DCF DGRKRCAWITP
Sbjct: 109 SSSS---LRRNLTEERDEKA-------SDCFCDGRKRCAWITP 141
>gi|297839853|ref|XP_002887808.1| hypothetical protein ARALYDRAFT_477160
[Arabidopsis lyrata subsp. lyrata]
Length = 323
Score = 79 bits (193), Expect = 6e-013
Identities = 62/134 (46%), Positives = 80/134 (59%), Gaps = 18/134 (13%)
Frame = +2
Query: 236 MSDPPRFRSVLGPTGNKPQRKPPGMMKKTVESKDEKKTKKP-PDTTPD-SPTTTLKQCS- 406
MS PPR RSV + R+ ++ +K KKP D T + + T + QCS
Sbjct: 1 MSAPPRVRSV-----DSSDREFRSVLGPAGNKLQQKPLKKPVADKTKNLTFTKNMPQCSP 55
Query: 407 ---SILRRNTASSMTASYSSDASSSCDSLPLSVASSSSTCKKKPVSRRGGSVSSSASGAL 577
SILRRN SMTASYSSDASSSC+S PLSVAS+SS K RR GS+SSS+S
Sbjct: 56 LSPSILRRN-GISMTASYSSDASSSCESSPLSVASTSS---GKRALRRSGSLSSSSS--- 108
Query: 578 MRRKQVDEKEDKAA 619
+RR +E+++KA+
Sbjct: 109 LRRNLTEERDEKAS 122
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,178,980,611,991
Number of Sequences: 15229318
Number of Extensions: 1178980611991
Number of Successful Extensions: 310660920
Number of sequences better than 0.0: 0
|