BLASTX 7.6.2
Query= UN81402 /QuerySize=736
(735 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba] 334 1e-089
gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT... 301 7e-080
gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arab... 292 6e-077
gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana] 292 6e-077
gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigm... 289 5e-076
gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vini... 158 1e-036
gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpo... 157 2e-036
gi|225436223|ref|XP_002273602.1| PREDICTED: similar to SIGB (SIG... 157 2e-036
gi|224126061|ref|XP_002319746.1| predicted protein [Populus tric... 147 2e-033
gi|224144900|ref|XP_002325455.1| predicted protein [Populus tric... 128 8e-028
gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea] 92 5e-017
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 334 bits (854), Expect = 1e-089
Identities = 168/193 (87%), Positives = 181/193 (93%), Gaps = 1/193 (0%)
Frame = +1
Query: 97 MSSCLLPNFKCQPDSFSIHFRTSYPVSKHNKSSVYFQPQCAVSTSPPLLTSTLDVSKLRL 276
MSSCLLPNFKCQPDSFS+HFRTSY VSKH+K S +FQPQCAVSTSPPLLTSTLDV+KLRL
Sbjct: 1 MSSCLLPNFKCQPDSFSVHFRTSYSVSKHSKGSAFFQPQCAVSTSPPLLTSTLDVAKLRL 60
Query: 277 PSFDTDSDSRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAEALALARA 456
PSFDTDSDSRISDRPW+YT T G STEAKYLEALASETLLTSDEAVVAAA AEA+ALARA
Sbjct: 61 PSFDTDSDSRISDRPWTYTRTIGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVALARA 120
Query: 457 ALKVAKDATLFKDTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLPVSDTGVVSDRVTA 636
ALKVAKDATLF ++HN+KLSVSS DKRSKWDQFTEKERAGILGHL VSDTGVVSDR+TA
Sbjct: 121 ALKVAKDATLFGNSHNTKLSVSSAADKRSKWDQFTEKERAGILGHLAVSDTGVVSDRITA 180
Query: 637 P-ALKCNKESSDD 672
P +L+CNKE+SDD
Sbjct: 181 PGSLECNKEASDD 193
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915
[Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 301 bits (770), Expect = 7e-080
Identities = 154/192 (80%), Positives = 168/192 (87%), Gaps = 2/192 (1%)
Frame = +1
Query: 97 MSSCLLPNFKCQPDSFSIHFRTSYPVSKHNKSSVYFQPQCAVSTSPPLLTSTLDVSKLRL 276
MSSCLLP FKC PDSFSIHFRTS+ KHNK SV+FQPQCAVSTSP LLTS LDV+KLRL
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCARKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 60
Query: 277 PSFDTDSDSRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAEALALARA 456
PSFDTDSDSRISDR W+YT T G STEAKYLEALASETLLTSDEAVV AA AEA+ALARA
Sbjct: 61 PSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 120
Query: 457 ALKVAKDATLFKDTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLPVSDTGVVSDRVTA 636
A+KVAKDATLFK+++N+ L +SST DKRSKWDQFTEKERAGILGHL VSD G+VSD++TA
Sbjct: 121 AVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITA 180
Query: 637 PALKCNKESSDD 672
PA NKES D
Sbjct: 181 PA--SNKESPGD 190
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis
thaliana]
Length = 572
Score = 292 bits (745), Expect = 6e-077
Identities = 151/192 (78%), Positives = 164/192 (85%), Gaps = 2/192 (1%)
Frame = +1
Query: 97 MSSCLLPNFKCQPDSFSIHFRTSYPVSKHNKSSVYFQPQCAVSTSPPLLTSTLDVSKLRL 276
MSSCLLP FKC PDSFSIHFRTS+ KHNK SV+FQPQCAVSTSP LLTS LDV+KLRL
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 60
Query: 277 PSFDTDSDSRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAEALALARA 456
PSFDTDSDS ISDR W+YT G STEAKYLEALASETLLTSDEAVV AA AEA+ALARA
Sbjct: 61 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 120
Query: 457 ALKVAKDATLFKDTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLPVSDTGVVSDRVTA 636
A+KVAKDATLFK+++N+ L SST DKRSKWDQFTEKERAGILGHL VSD G+VSD++TA
Sbjct: 121 AVKVAKDATLFKNSNNTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITA 180
Query: 637 PALKCNKESSDD 672
A NKES D
Sbjct: 181 SA--SNKESIGD 190
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 292 bits (745), Expect = 6e-077
Identities = 151/192 (78%), Positives = 164/192 (85%), Gaps = 2/192 (1%)
Frame = +1
Query: 97 MSSCLLPNFKCQPDSFSIHFRTSYPVSKHNKSSVYFQPQCAVSTSPPLLTSTLDVSKLRL 276
MSSCLLP FKC PDSFSIHFRTS+ KHNK SV+FQPQCAVSTSP LLTS LDV+KLRL
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 60
Query: 277 PSFDTDSDSRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAEALALARA 456
PSFDTDSDS ISDR W+YT G STEAKYLEALASETLLTSDEAVV AA AEA+ALARA
Sbjct: 61 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 120
Query: 457 ALKVAKDATLFKDTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLPVSDTGVVSDRVTA 636
A+KVAKDATLFK+++N+ L SST DKRSKWDQFTEKERAGILGHL VSD G+VSD++TA
Sbjct: 121 AVKVAKDATLFKNSNNTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITA 180
Query: 637 PALKCNKESSDD 672
A NKES D
Sbjct: 181 SA--SNKESIGD 190
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1
[Arabidopsis thaliana]
Length = 572
Score = 289 bits (737), Expect = 5e-076
Identities = 150/192 (78%), Positives = 163/192 (84%), Gaps = 2/192 (1%)
Frame = +1
Query: 97 MSSCLLPNFKCQPDSFSIHFRTSYPVSKHNKSSVYFQPQCAVSTSPPLLTSTLDVSKLRL 276
MSSCLLP FKC PDSFSIHFRTS+ KHNK SV+FQPQCAVSTSP LLTS LDV+KLRL
Sbjct: 1 MSSCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTSMLDVAKLRL 60
Query: 277 PSFDTDSDSRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAEALALARA 456
PSFDTDSDS ISDR W+YT G STEAKYLEALASETLLTSDEAVV AA AEA+ALARA
Sbjct: 61 PSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARA 120
Query: 457 ALKVAKDATLFKDTHNSKLSVSSTPDKRSKWDQFTEKERAGILGHLPVSDTGVVSDRVTA 636
A+KVAKDATLFK+++ + L SST DKRSKWDQFTEKERAGILGHL VSD G+VSD++TA
Sbjct: 121 AVKVAKDATLFKNSNYTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITA 180
Query: 637 PALKCNKESSDD 672
A NKES D
Sbjct: 181 SA--SNKESIGD 190
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 158 bits (397), Expect = 1e-036
Identities = 97/201 (48%), Positives = 125/201 (62%), Gaps = 17/201 (8%)
Frame = +1
Query: 103 SCLLPNFKCQPDSFSIHFRTSYPVSKHNKSSVYFQPQCAVS-TSPPLLTST---LDVSKL 270
SCLLP FKC PD+FS H + N+ ++YF+ QCA+S TSPPL TST LD+ KL
Sbjct: 2 SCLLPQFKCPPDTFSTH--PKLHILSKNREAIYFRVQCALSTTSPPLSTSTTAVLDIEKL 59
Query: 271 RLPSFDTDSDSRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAEALALA 450
RLPS ++ S+S + RPW+Y G G TEA + LA ETLLTS+EAV+AAA AEA+ALA
Sbjct: 60 RLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVALA 119
Query: 451 RAALKVAKDATLFKDTHNSKLS-------VSSTPDKRSKWDQFTEKERAGILGHLPVSDT 609
+AA+KVAKDA +NS S +S + + QFTE ER GILG ++T
Sbjct: 120 KAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSVGAET 179
Query: 610 GVVSDRVTAPALKCNKESSDD 672
G+V +L+ E SDD
Sbjct: 180 GMVDYN----SLQDVTEDSDD 196
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative
[Ricinus communis]
Length = 569
Score = 157 bits (396), Expect = 2e-036
Identities = 93/184 (50%), Positives = 117/184 (63%), Gaps = 22/184 (11%)
Frame = +1
Query: 97 MSSCLLPNFKCQPDSFSIHFRTSY------PVSKHNKSSVYFQPQCAVS-TSPPLLTSTL 255
M SCLLP FKCQPD+FSIHFR +Y S ++ +Y++ QC +S TSP T+ L
Sbjct: 1 MMSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVL 60
Query: 256 DVSKLRLPSFDTDSDSRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAE 435
D+ KLRLPSF+ SDS + PW+Y A + LA+ETL+TSDEAV+AAA AE
Sbjct: 61 DLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAAAAAE 111
Query: 436 ALALARAALKVAKDATLFKDTH-----NSKLSVSSTPDKRSKWDQFTEKERAGILGHLPV 600
A+ALARAA+KVAKDA L SKL+ ST D S+W QFTE ERA I+G
Sbjct: 112 AVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTID-ASRWPQFTETERARIIGDSVA 170
Query: 601 SDTG 612
++TG
Sbjct: 171 TETG 174
>gi|225436223|ref|XP_002273602.1| PREDICTED: similar to SIGB (SIGMA FACTOR B);
DNA binding / DNA-directed RNA polymerase/ transcription factor [Vitis
vinifera]
Length = 578
Score = 157 bits (395), Expect = 2e-036
Identities = 98/202 (48%), Positives = 126/202 (62%), Gaps = 16/202 (7%)
Frame = +1
Query: 103 SCLLPNFKCQPDSFSIHFRTSYPV-SKHNKSSVYFQPQCAVS-TSPPLLTST---LDVSK 267
SCLLP FKC PD+FS H + S N+ ++YF+ QCA+S TSPPL TST LD+ K
Sbjct: 2 SCLLPQFKCPPDTFSTHPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLDIEK 61
Query: 268 LRLPSFDTDSDSRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAEALAL 447
LRLPS ++ S+S + RPW+Y G G TEA + LA ETLLTS+EAV+AAA AEA+AL
Sbjct: 62 LRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVAL 121
Query: 448 ARAALKVAKDATLFKDTHNSKLS-------VSSTPDKRSKWDQFTEKERAGILGHLPVSD 606
A+AA+KVAKDA +NS S +S + + QFTE ER GILG ++
Sbjct: 122 AKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSVGAE 181
Query: 607 TGVVSDRVTAPALKCNKESSDD 672
TG+V +L+ E SDD
Sbjct: 182 TGMVDYN----SLQDVTEDSDD 199
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 147 bits (370), Expect = 2e-033
Identities = 83/175 (47%), Positives = 115/175 (65%), Gaps = 11/175 (6%)
Frame = +1
Query: 103 SCLLPNFKCQPDSFSIHFRTSYPVSKHNKSSVYFQPQCAVSTSPPLLTSTLDVSKLRLPS 282
SCLLP FKCQPD+FS+HFR +H+ ++ PQC +S++ P T+ LD+ KLRLPS
Sbjct: 2 SCLLPQFKCQPDTFSVHFRN----LQHHGTNHTQLPQCVLSSASP-STAVLDLEKLRLPS 56
Query: 283 FDTDSDSRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAEALALARAAL 462
+ SDS ++RPW+Y G G + + +LA+ETL+ +DEAV+AAA AEA+ALARAA+
Sbjct: 57 LEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAVALARAAV 116
Query: 463 KVAKDATLFKDTHNS-----KLSVSSTPDK-RSKWDQFTEKERAGILGHLPVSDT 609
KVAKDA ++S K+ ++ST D S W TEKERA I+G ++T
Sbjct: 117 KVAKDAAEMAKNYSSMKKETKIPIASTTDSFSSMWSLLTEKERADIIGDSVSAET 171
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 128 bits (321), Expect = 8e-028
Identities = 78/171 (45%), Positives = 106/171 (61%), Gaps = 16/171 (9%)
Frame = +1
Query: 124 KCQPDSFSIHFRTSYPVSKHNKSSVYFQPQCAVST-SPPLLTSTLDVSKLRLPSFDTDSD 300
KCQPDSFSIH N F+ QCA+S+ SP T+ L++ KLRLPS ++ SD
Sbjct: 9 KCQPDSFSIH---------SNGEPFCFRAQCALSSASPSTSTAVLNLEKLRLPSLESHSD 59
Query: 301 SRISDRPWSYTGTTGLSTEAKYLEALASETLLTSDEAVVAAAVAEALALARAALKVAKDA 480
S ++RPW+Y G G E + +LA+ETL+ +DEAV+AAA AEA+ALARAA+KVAKDA
Sbjct: 60 SIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAAAEAVALARAAVKVAKDA 119
Query: 481 TLFKDTH-----NSKLSVSSTPDK-RSKWDQFTEKERAGILGHLPVSDTGV 615
+ +K+ ++ST D S W T KERA I+G ++TG+
Sbjct: 120 AEMAKNYCSVNTETKIPIASTADSFSSMWSLLTGKERADIIGVSFSAETGL 170
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 92 bits (228), Expect = 5e-017
Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 7/160 (4%)
Frame = +1
Query: 184 NKSSVYFQPQCAVSTSPP----LLTSTLDVSKLRLPSFDTDSDSRISDRPWSYTGTTGLS 351
N+ V F+PQCAVST PP TS DV KLRLP +++S+S + ++ T G
Sbjct: 36 NRDLVCFRPQCAVSTPPPPTAAAETSIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSP 95
Query: 352 TEAKYLEALASETLLTSDEAVVAAAVAEALALARAALKVAKDATLFKDTHNSKLSVSSTP 531
E K+ AL ++ L+ ++EAV+AAA AEA+ALARAA K+AKDA L VS
Sbjct: 96 AEVKFDTALTAKLLIENEEAVIAAAAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLE 155
Query: 532 DKRSKWD--QFTEKERAGILGHLPVSDTGV-VSDRVTAPA 642
+ + Q E E+ G + + S+ + D V+ PA
Sbjct: 156 GQSLHFSGAQLLENEQVGSMRNFEGSENSLREGDTVSEPA 195
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,207,887,359,536
Number of Sequences: 15229318
Number of Extensions: 1207887359536
Number of Successful Extensions: 328079447
Number of sequences better than 0.0: 0
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