BLASTX 7.6.2
Query= UN83108 /QuerySize=836
(835 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapie... 126 3e-028
sp|Q80SY5|PR38B_MOUSE Pre-mRNA-splicing factor 38B OS=Mus muscul... 125 4e-028
sp|Q6AXY7|PR38B_RAT Pre-mRNA-splicing factor 38B OS=Rattus norve... 125 4e-028
sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio reri... 113 2e-024
>sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B
PE=1 SV=1
Length = 546
Score = 126 bits (314), Expect = 3e-028
Identities = 65/143 (45%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Frame = +1
Query: 394 STAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDD 573
STA+CLLYK FT+KLT KQ+ GL+ HTDSPYIRA+GF+Y+RY LW W+E ++ D+
Sbjct: 126 STAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDE 185
Query: 574 EEF-APGSNGRVTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGS 750
E+ G V T+G +R L L +F TLFPRIPVPV + I ++ K G
Sbjct: 186 EDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGK 245
Query: 751 TGDMSRGSEDTARRPPSVKASLS 819
G RR S + SLS
Sbjct: 246 EGAEEIDRHVERRRSRSPRRSLS 268
Score = 60 bits (143), Expect = 2e-008
Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = +1
Query: 247 LEKVLSMNIVSSDYFK-ELYGLKTYHEVVDEIYNQVSHVEPWMGGN 381
L ++ NI+SS YFK +LY LKTYHEVVDEIY +V+HVEPW G+
Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGS 103
>sp|Q80SY5|PR38B_MOUSE Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b
PE=1 SV=1
Length = 542
Score = 125 bits (313), Expect = 4e-028
Identities = 65/143 (45%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Frame = +1
Query: 394 STAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDD 573
STA+CLLYK FT+KLT KQ+ GL+ HTDSPYIRA+GF+Y+RY LW W+E ++ D+
Sbjct: 127 STAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDE 186
Query: 574 EEF-APGSNGRVTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGS 750
E+ G V T+G +R L L +F TLFPRIPVPV + I ++ K G
Sbjct: 187 EDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGK 246
Query: 751 TGDMSRGSEDTARRPPSVKASLS 819
G RR S + SLS
Sbjct: 247 EGIEEIDRHVERRRSRSPRRSLS 269
Score = 60 bits (143), Expect = 2e-008
Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = +1
Query: 247 LEKVLSMNIVSSDYFK-ELYGLKTYHEVVDEIYNQVSHVEPWMGGN 381
L ++ NI+SS YFK +LY LKTYHEVVDEIY +V+HVEPW G+
Sbjct: 59 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGS 104
>sp|Q6AXY7|PR38B_RAT Pre-mRNA-splicing factor 38B OS=Rattus norvegicus
GN=Prpf38b PE=2 SV=1
Length = 542
Score = 125 bits (313), Expect = 4e-028
Identities = 65/143 (45%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Frame = +1
Query: 394 STAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDD 573
STA+CLLYK FT+KLT KQ+ GL+ HTDSPYIRA+GF+Y+RY LW W+E ++ D+
Sbjct: 126 STAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDE 185
Query: 574 EEF-APGSNGRVTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGS 750
E+ G V T+G +R L L +F TLFPRIPVPV + I ++ K G
Sbjct: 186 EDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGK 245
Query: 751 TGDMSRGSEDTARRPPSVKASLS 819
G RR S + SLS
Sbjct: 246 EGVEEIDRHIERRRSRSPRRSLS 268
Score = 60 bits (143), Expect = 2e-008
Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = +1
Query: 247 LEKVLSMNIVSSDYFK-ELYGLKTYHEVVDEIYNQVSHVEPWMGGN 381
L ++ NI+SS YFK +LY LKTYHEVVDEIY +V+HVEPW G+
Sbjct: 58 LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGS 103
>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b
PE=2 SV=1
Length = 501
Score = 113 bits (281), Expect = 2e-024
Identities = 60/132 (45%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Frame = +1
Query: 394 STAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDD 573
STA+CLLYK FT+KLT KQ+ GL+ H+DSP IRA+GF+Y+RY L WY+ ++ D+
Sbjct: 104 STAFCLLYKLFTLKLTRKQVMGLITHSDSPDIRALGFMYIRYTQPPPDLVDWYDEFLDDE 163
Query: 574 EEF-APGSNGRVTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGS 750
EE G V T+G +R L L +F TLFPRIPVPV + I +++ + P KP
Sbjct: 164 EELDVKAGGGCVMTVGEMLRSFLTKLEWFSTLFPRIPVPVQKAIDQHMK--SRPRKPPQK 221
Query: 751 TGDMSRGSEDTA 786
E TA
Sbjct: 222 DEQEEEEEEATA 233
Score = 59 bits (142), Expect = 3e-008
Identities = 28/46 (60%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = +1
Query: 247 LEKVLSMNIVSSDYFK-ELYGLKTYHEVVDEIYNQVSHVEPWMGGN 381
L ++ N++SS YFK +LY LKTYHEVVDEIY +V+HVEPW G+
Sbjct: 36 LNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKVNHVEPWEKGS 81
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,776,655,547
Number of Sequences: 518415
Number of Extensions: 262776655547
Number of Successful Extensions: 1686502940
Number of sequences better than 0.0: 0
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