Library    |     Search    |     Batch query    |     SNP    |     SSR  

GenBank blast output of UN83291


BLASTX 7.6.2

Query= UN83291 /QuerySize=833
        (832 letters)

Database: GenBank nr;
          15,229,318 sequences; 5,219,829,378 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase...     61   2e-007
gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helic...     61   2e-007
gi|3047077|gb|AAC13590.1| contains similarity to the conserved C...     61   2e-007
gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]          61   2e-007
gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]             61   2e-007
gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrat...     61   2e-007
gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA heli...     61   2e-007
gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium prat...     56   5e-006
gi|212274773|ref|NP_001130659.1| hypothetical protein LOC1001917...     55   9e-006
gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]         55   9e-006

>gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis
        thaliana]

          Length = 747

 Score =  61 bits (147), Expect = 2e-007
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I  R  +LGEVEYLVLDEADQMLAVGFEEAVESILE +
Sbjct: 243 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280

>gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3
        [Arabidopsis thaliana]

          Length = 748

 Score =  61 bits (147), Expect = 2e-007
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I  R  +LGEVEYLVLDEADQMLAVGFEEAVESILE +
Sbjct: 243 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280

>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal
        domain of helicases (Pfam: helicase_C.hmm, score: 90.11), similar to
        DEAD-box h [Arabidopsis thaliana]

          Length = 477

 Score =  61 bits (147), Expect = 2e-007
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I  R  +LGEVEYLVLDEADQMLAVGFEEAVESILE +
Sbjct: 245 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 282

>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]

          Length = 748

 Score =  61 bits (147), Expect = 2e-007
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I  R  +LGEVEYLVLDEADQMLAVGFEEAVESILE +
Sbjct: 243 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280

>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]

          Length = 748

 Score =  61 bits (147), Expect = 2e-007
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I  R  +LGEVEYLVLDEADQMLAVGFEEAVESILE +
Sbjct: 243 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280

>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp.
        lyrata]

          Length = 748

 Score =  61 bits (147), Expect = 2e-007
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I  R  +LGEVEYLVLDEADQMLAVGFEEAVESILE +
Sbjct: 243 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280

>gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA helicase 3
        [Arabidopsis thaliana]

          Length = 655

 Score =  61 bits (147), Expect = 2e-007
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I  R  +LGEVEYLVLDEADQMLAVGFEEAVESILE +
Sbjct: 150 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 187

>gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium pratense]

          Length = 402

 Score =  56 bits (134), Expect = 5e-006
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I+ R  +L E++YLVLDEADQMLAVGFEE VESILE +
Sbjct:  24 INGRSLQLSEIQYLVLDEADQMLAVGFEEDVESILETI 61

>gi|212274773|ref|NP_001130659.1| hypothetical protein LOC100191761 [Zea mays]

          Length = 598

 Score =  55 bits (132), Expect = 9e-006
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I+    +LGEV+YLVLDEADQMLAVGFEE VE+IL+Q+
Sbjct:  82 INGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 119

>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]

          Length = 744

 Score =  55 bits (132), Expect = 9e-006
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +3

Query: 489 ISSRQRELGEVEYLVLDEADQMLAVGFEEAVESILEQV 602
           I+    +LGEV+YLVLDEADQMLAVGFEE VE+IL+Q+
Sbjct: 227 INGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQL 264

  Database: GenBank nr
    Posted date:  Thu Sep 08 23:06:31 2011
  Number of letters in database: 5,219,829,378
  Number of sequences in database:  15,229,318

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,352,524,086,339
Number of Sequences: 15229318
Number of Extensions: 1352524086339
Number of Successful Extensions: 374284986
Number of sequences better than 0.0: 0