BLASTX 7.6.2
Query= UN83855 /QuerySize=808
(807 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G23620.1 | Symbols: | 50S ribosomal protein-r... 444 5e-125
TAIR9_protein||AT5G66860.1 | Symbols: | INVOLVED IN: translatio... 154 9e-038
>TAIR9_protein||AT4G23620.1 | Symbols: | 50S ribosomal protein-related |
chr4:12315016-12316659 REVERSE
Length = 265
Score = 444 bits (1140), Expect = 5e-125
Identities = 224/254 (88%), Positives = 240/254 (94%), Gaps = 4/254 (1%)
Frame = +3
Query: 51 MLLRRATAVLPKTLQNLRLYSPAATSAIPLEH---TQLDYLPGFPRPDPKHAETILAVPR 221
MLLRRA LPKTLQNLRL+SPAA +A+ L+H TQL YLPGFPRPDPKHAETILAVPR
Sbjct: 1 MLLRRA-KTLPKTLQNLRLFSPAANAALSLDHIQETQLTYLPGFPRPDPKHAETILAVPR 59
Query: 222 SDSGKNISAKERKAGRVPSIIFEQEDGQHGGNKRLVSVQTNQIRKLVTHMGYSFFLSRVF 401
S SGK+ISAKERKAGRVPSIIFEQEDGQHGGNKRL+SVQTNQIRKLV H+GYSFFLSR+F
Sbjct: 60 SVSGKSISAKERKAGRVPSIIFEQEDGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLF 119
Query: 402 DVEVRSEIGSDEVVEKVRALPRSIHLHSGSDAPLNVTFIRAPPGTLLKVDIPLVFIGDDV 581
DVEVR+EIGSDEV+EKVRALPR+IHLHSG+DAPLNVTFIRAPPG LLKVDIPLVFIGDDV
Sbjct: 120 DVEVRAEIGSDEVIEKVRALPRAIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDV 179
Query: 582 SPGLKKGASLNTIKRTVKFLCPAEIIPPYIEVDLSHLDVGQKLVTGDLKVHPALKLIKSK 761
SPGLKKGASLNTIKRTVKFLCPAEIIPPYIEVDLS LD+GQKLV GDLKVHPALKLIKSK
Sbjct: 180 SPGLKKGASLNTIKRTVKFLCPAEIIPPYIEVDLSQLDIGQKLVMGDLKVHPALKLIKSK 239
Query: 762 DEPVVKIAGGRVSD 803
DEP+VK+AGGRV+D
Sbjct: 240 DEPIVKVAGGRVTD 253
>TAIR9_protein||AT5G66860.1 | Symbols: | INVOLVED IN: translation; LOCATED IN:
mitochondrion; CONTAINS InterPro DOMAIN/s: Ribosomal protein
L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035); BEST
Arabidopsis thaliana protein match is: 50S ribosomal protein-related
(TAIR:AT4G23620.1); Has 2346 Blast hits to 2345 proteins in 433
species: Archae - 0; Bacteria - 930; Metazoa - 0; Fungi - 0; Plants -
41; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). |
chr5:26701233-26702531 REVERSE
Length = 250
Score = 154 bits (387), Expect = 9e-038
Identities = 83/202 (41%), Positives = 126/202 (62%), Gaps = 7/202 (3%)
Frame = +3
Query: 198 ETILAVPRSDSGKNISAKERKAGRVPSIIFEQE----DGQHGG--NKRLVSVQTNQIRKL 359
+TI A+PR +G+ +SA++R GR+P+++F Q D G K+L++ QI+ +
Sbjct: 34 QTIQAIPREATGRGVSARDRTIGRIPAVVFPQSLLDTDASKRGVSRKQLLTADKKQIKSI 93
Query: 360 VTHMGYSFFLSRVFDVEVRSEIGSDEVVEKVRALPRSIHLHSGSDAPLNVTFIRAPPGTL 539
+ +G FF S F +++R+ GS +VE R LP +H + LN+ F+ A G
Sbjct: 94 IDSVGLPFFCSTTFQLQIRAGQGSSTLVESGRVLPLKVHRDEETGKILNLVFVWADDGEK 153
Query: 540 LKVDIPLVFIGDDVSPGLKKGASLNTIKRTVKFLCPAEIIPPYIEVDLSHLDVGQKLVTG 719
LKVD+P+VF G D PGL+KG +L TI+ T+K L PAE IP IEVD+S+LD+ K++
Sbjct: 154 LKVDVPVVFKGLDHCPGLQKGGNLRTIRSTLKLLGPAEHIPSKIEVDVSNLDIEDKVLLQ 213
Query: 720 DLKVHPALKLI-KSKDEPVVKI 782
D+ HP+LKL+ K++ PV KI
Sbjct: 214 DVVFHPSLKLLSKNETMPVCKI 235
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,252,145,367
Number of Sequences: 33410
Number of Extensions: 33252145367
Number of Successful Extensions: 1129160757
Number of sequences better than 0.0: 0
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