RadishBase

| | | |

Information for unigene UN00015

FASTA Sequence

Unigene ID: UN00015	Length: 1084	SSR
GGAGATTCATAAAGATCTCTTATCTTCTCCTCATTCACCACTGGTTGTTCCCCAACAACTTGTCAAATCATTTCTTTATTGCATCA TCTCTCCTATTCTTTGTTACTTCTTCTCCAAGATCCTTTCCACCTTCACCTACATTTTCTGCTAAGCAAACAAAGTCAGATTCATG TCTTCTTGATTTAAAACCAAGAATCTATAATCAAGAACTGTGATTTGGAAAATATGAAGATACAGTGTGATGTGTGTGAGAAAGCT CCGGCAACGTTGATATGTTGTTCCGACGAAGCAGCTTTGTGTCCTAGATGCGACGTGGAGATTCACGCTGCTAACAAACTCGCAAG CAAGCACCGACGCCTTCATCTCAATGCTCTTGCCACCAAGTTCCCTCGTTGCGATATTTGCCAAGAGAAGTCAGCTTTCATTTTCT GTGTTGAGGATAGAGCTCTGCTTTGCAGGGACTGTGATGAATCCATCCACGTAGCTAGCTCTAGATCTGCAAATCACCAGAGGTTC TTAGCCACTGGAATCAAAGTGGCTCTGAACTCAAGTAGTTGCAGCAAGAATCAATCTGAGCCTTCCGAGAAGCAACAGAAAGTTAA GGAGATTCCAGCTAAAACCCTAAACCAGCAACAACCTTCTTCTGCTACTCCTCTTCCGTGGGCGGTTGACGATTTCTTTCACTTCT CTGATCCTGAGTGTACCGAGAAGAAAGGACAGCTTGATCTTGGGGAGTTAGAATGGTTTTCAGACATGGGTTTCTTCGGTACTGAT CAGACTAATCAGGAGAGTCTTCCTGCAGCTGAAGTTCCGGAGCTTTCTGTTTCGCATTTAGGTCATGTTCATTCATACAGACCCAC CATGAAGTCGAATGCTTCATACAAGAAGCCGAGGTTGGAGTTTAGAGATGATGATGATGATGAAGAGCACTTCATTGTCCCTGATC TAGGCTAATAATGCTATATGTAAGCTATGTGTAGACATTCCTCTATGGAAAAATAAGGAAGATTATGCGTGGATGCAATGTCATAT CTTTAGTTTTGTTAAGTTGAGTAAAGCTATGTTGATAGCTTATTAGTTATTA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABV89657 salt tolerance protein [Brassica rapa]	1091	9e-117
NP_172094 Salt tolerance protein [Arabidopsis thaliana]	1063	2e-113
XP_002892316 hypothetical protein ARALYDRAFT_470616 [Arabidopsis lyrata subsp. lyrata]	1018	3e-108
BAJ34047 unnamed protein product [Thellungiella halophila]	865	1e-090
XP_002879325 hypothetical protein ARALYDRAFT_482070 [Arabidopsis lyrata subsp. lyrata]	834	5e-087

Swiss-Prot top hits (Blast detail)	Score	e value
Q96288 Salt tolerance protein	1063	7e-115
Q9SID1 Salt tolerance-like protein	835	2e-088
Q9SYM2 Probable salt tolerance-like protein At1g78600	387	2e-036
Q9LQZ7 Probable salt tolerance-like protein At1g75540	344	2e-031
Q9FHH8 Zinc finger protein CONSTANS-LIKE 5	142	4e-008

TrEMBL top hits (Blast detail)	Score	e value
A8IXV4 Salt tolerance protein	1091	6e-117
Q3EDI0 Putative uncharacterized protein At1g06040.2	733	2e-075
B3TLK3 Putative transcription factor	726	1e-074
B9MY52 Predicted protein	721	5e-074
C6T712 Putative uncharacterized protein	706	3e-072

Arabidopsis top hits (Blast detail)	Score	e value
AT1G06040.1 STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding	1064	5e-116
AT2G31380.1 STH; protein domain specific binding / transcription factor/ zinc ion binding	835	2e-089
AT1G06040.2 STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding	733	1e-077
AT1G78600.1 LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1); transcription factor/ zinc ion binding	387	1e-037
AT1G75540.1 STH2 (SALT TOLERANCE HOMOLOG2); transcription factor/ zinc ion binding	344	1e-032

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			67%


7	1			33%

Unigene Members	Member information